Examples with RuleEngine org.geneontology.rules.engine.RuleEngine used on opensource projects

Example 1 with RuleEngine

use of org.geneontology.rules.engine.RuleEngine in project minerva by geneontology.

the class GPADSPARQLTest method setupRules.

@BeforeClass
public static void setupRules() throws OWLOntologyCreationException {
    OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
    OWLOntology ont = manager.loadOntologyFromOntologyDocument(GPADSPARQLTest.class.getResourceAsStream("/ro-merged-2017-10-02.ofn"));
    Set<Rule> rules = new HashSet<>();
    rules.addAll(JavaConverters.setAsJavaSetConverter(OWLtoRules.translate(ont, Imports.INCLUDED, true, true, true, true)).asJava());
    rules.addAll(JavaConverters.setAsJavaSetConverter(OWLtoRules.indirectRules(ont)).asJava());
    arachne = new RuleEngine(Bridge.rulesFromJena(JavaConverters.asScalaSetConverter(rules).asScala()), true);
}