Examples with UndirectedGraph org.gephi.graph.api.UndirectedGraph used on opensource projects

Example 66 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class GraphDistanceNGTest method testSpecial3UndirectedGraphHarmonicCloseness.

@Test
public void testSpecial3UndirectedGraphHarmonicCloseness() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    Node node6 = graphModel.factory().newNode("5");
    Node node7 = graphModel.factory().newNode("6");
    undirectedGraph.addNode(node1);
    undirectedGraph.addNode(node2);
    undirectedGraph.addNode(node3);
    undirectedGraph.addNode(node4);
    undirectedGraph.addNode(node5);
    undirectedGraph.addNode(node6);
    undirectedGraph.addNode(node7);
    Edge edge12 = graphModel.factory().newEdge(node1, node2, false);
    Edge edge13 = graphModel.factory().newEdge(node1, node3, false);
    Edge edge14 = graphModel.factory().newEdge(node1, node4, false);
    Edge edge15 = graphModel.factory().newEdge(node1, node5, false);
    Edge edge16 = graphModel.factory().newEdge(node1, node6, false);
    Edge edge17 = graphModel.factory().newEdge(node1, node7, false);
    Edge edge23 = graphModel.factory().newEdge(node2, node3, false);
    Edge edge34 = graphModel.factory().newEdge(node3, node4, false);
    Edge edge45 = graphModel.factory().newEdge(node4, node5, false);
    Edge edge56 = graphModel.factory().newEdge(node5, node6, false);
    Edge edge67 = graphModel.factory().newEdge(node6, node7, false);
    Edge edge72 = graphModel.factory().newEdge(node7, node2, false);
    undirectedGraph.addEdge(edge12);
    undirectedGraph.addEdge(edge13);
    undirectedGraph.addEdge(edge14);
    undirectedGraph.addEdge(edge15);
    undirectedGraph.addEdge(edge16);
    undirectedGraph.addEdge(edge17);
    undirectedGraph.addEdge(edge23);
    undirectedGraph.addEdge(edge34);
    undirectedGraph.addEdge(edge45);
    undirectedGraph.addEdge(edge56);
    undirectedGraph.addEdge(edge67);
    undirectedGraph.addEdge(edge72);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph hierarchicalUndirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(hierarchicalUndirectedGraph);
    HashMap<String, double[]> metricsMap = (HashMap) d.calculateDistanceMetrics(graphModel.getGraph(), indicies, false, false);
    double[] harmomic = metricsMap.get(GraphDistance.HARMONIC_CLOSENESS);
    int index1 = indicies.get(node1);
    int index3 = indicies.get(node3);
    assertEquals(harmomic[index1], 6.0 / 6.0, TOLERANCE);
    assertEquals(harmomic[index3], (3.0 + 3.0 / 2.0) / 6.0, TOLERANCE);
}

Example 67 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class GraphDistanceNGTest method testNullGraphAvPathLength.

@Test
public void testNullGraphAvPathLength() {
    GraphModel graphModel = GraphGenerator.generateNullUndirectedGraph(5);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(undirectedGraph);
    d.calculateDistanceMetrics(graphModel.getGraph(), indicies, false, false);
    double averageDegree = d.getPathLength();
    assertEquals(averageDegree, Double.NaN);
}

Example 68 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class GraphDistanceNGTest method testTwoConnectrdNodesRadius.

@Test
public void testTwoConnectrdNodesRadius() {
    GraphModel graphModel = GraphGenerator.generatePathUndirectedGraph(2);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(undirectedGraph);
    d.calculateDistanceMetrics(graphModel.getGraph(), indicies, false, false);
    double radius = d.getRadius();
    assertEquals(radius, 1.0, TOLERANCE);
}

Example 69 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class GraphDistanceNGTest method testCompleteGraphHarmonicCloseness.

@Test
public void testCompleteGraphHarmonicCloseness() {
    GraphModel graphModel = GraphGenerator.generateCompleteUndirectedGraph(5);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(undirectedGraph);
    HashMap<String, double[]> metricsMap = (HashMap) d.calculateDistanceMetrics(graphModel.getGraph(), indicies, false, false);
    double[] harmonic = metricsMap.get(GraphDistance.HARMONIC_CLOSENESS);
    Node n1 = undirectedGraph.getNode("0");
    int index1 = indicies.get(n1);
    assertEquals(harmonic[index1], 1.0, TOLERANCE);
}

Example 70 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class GraphDistanceNGTest method testDirectedCyclicDiameter.

@Test
public void testDirectedCyclicDiameter() {
    GraphModel graphModel = GraphGenerator.generateCyclicDirectedGraph(5);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(undirectedGraph);
    d.calculateDistanceMetrics(graphModel.getGraph(), indicies, true, false);
    double diameter = d.getDiameter();
    assertEquals(diameter, 4.0, TOLERANCE);
}