Examples with UndirectedGraph org.gephi.graph.api.UndirectedGraph used on opensource projects

Example 81 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class ConnectedComponentsNGTest method testComputeOneNodeWeeklyConnectedComponents.

@Test
public void testComputeOneNodeWeeklyConnectedComponents() {
    GraphModel graphModel = GraphGenerator.generateNullUndirectedGraph(1);
    UndirectedGraph graph = graphModel.getUndirectedGraph();
    Node n = graph.getNode("0");
    ConnectedComponents c = new ConnectedComponents();
    HashMap<Node, Integer> indicies = new HashMap<>();
    indicies.put(n, 0);
    LinkedList<LinkedList<Node>> components = c.computeWeeklyConnectedComponents(graph, indicies);
    assertEquals(components.size(), 1);
}

Example 82 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class ConnectedComponentsNGTest method testSpecial2UndirectedGraphGiantComponent.

@Test
public void testSpecial2UndirectedGraphGiantComponent() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    Node node6 = graphModel.factory().newNode("5");
    Node node7 = graphModel.factory().newNode("6");
    Node node8 = graphModel.factory().newNode("7");
    Node node9 = graphModel.factory().newNode("8");
    undirectedGraph.addNode(node1);
    undirectedGraph.addNode(node2);
    undirectedGraph.addNode(node3);
    undirectedGraph.addNode(node4);
    undirectedGraph.addNode(node5);
    undirectedGraph.addNode(node6);
    undirectedGraph.addNode(node7);
    undirectedGraph.addNode(node8);
    undirectedGraph.addNode(node9);
    Edge edge12 = graphModel.factory().newEdge(node1, node2, false);
    Edge edge23 = graphModel.factory().newEdge(node2, node3, false);
    Edge edge45 = graphModel.factory().newEdge(node4, node5, false);
    Edge edge56 = graphModel.factory().newEdge(node5, node6, false);
    Edge edge64 = graphModel.factory().newEdge(node6, node4, false);
    Edge edge75 = graphModel.factory().newEdge(node7, node5, false);
    undirectedGraph.addEdge(edge12);
    undirectedGraph.addEdge(edge23);
    undirectedGraph.addEdge(edge45);
    undirectedGraph.addEdge(edge56);
    undirectedGraph.addEdge(edge64);
    undirectedGraph.addEdge(edge75);
    UndirectedGraph graph = graphModel.getUndirectedGraph();
    ConnectedComponents c = new ConnectedComponents();
    HashMap<Node, Integer> indicies = c.createIndiciesMap(graph);
    LinkedList<LinkedList<Node>> components = c.computeWeeklyConnectedComponents(graph, indicies);
    c.fillComponentSizeList(components);
    int giantComponent = c.getGiantComponent();
    int componentNumber5 = c.getComponentNumber(components, node5);
    assertEquals(giantComponent, componentNumber5);
}

Example 83 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class GraphDistanceNGTest method testOneNodeAvPathLength.

@Test
public void testOneNodeAvPathLength() {
    GraphModel graphModel = GraphGenerator.generateNullUndirectedGraph(1);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(undirectedGraph);
    d.calculateDistanceMetrics(graphModel.getGraph(), indicies, false, false);
    double averageDegree = d.getPathLength();
    assertEquals(averageDegree, Double.NaN);
}

Example 84 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class GraphDistanceNGTest method testSpecial1UndirectedGraphDiameter.

@Test
public void testSpecial1UndirectedGraphDiameter() {
    GraphModel graphModel = Lookup.getDefault().lookup(GraphController.class).getGraphModel();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    Node node1 = graphModel.factory().newNode("0");
    Node node2 = graphModel.factory().newNode("1");
    Node node3 = graphModel.factory().newNode("2");
    Node node4 = graphModel.factory().newNode("3");
    Node node5 = graphModel.factory().newNode("4");
    Node node6 = graphModel.factory().newNode("5");
    Node node7 = graphModel.factory().newNode("6");
    Node node8 = graphModel.factory().newNode("7");
    undirectedGraph.addNode(node1);
    undirectedGraph.addNode(node2);
    undirectedGraph.addNode(node3);
    undirectedGraph.addNode(node4);
    undirectedGraph.addNode(node5);
    undirectedGraph.addNode(node6);
    undirectedGraph.addNode(node7);
    undirectedGraph.addNode(node8);
    Edge edge12 = graphModel.factory().newEdge(node1, node2, false);
    Edge edge13 = graphModel.factory().newEdge(node1, node3, false);
    Edge edge34 = graphModel.factory().newEdge(node3, node4, false);
    Edge edge24 = graphModel.factory().newEdge(node2, node4, false);
    Edge edge56 = graphModel.factory().newEdge(node5, node6, false);
    Edge edge67 = graphModel.factory().newEdge(node6, node7, false);
    Edge edge78 = graphModel.factory().newEdge(node7, node8, false);
    Edge edge85 = graphModel.factory().newEdge(node8, node5, false);
    Edge edge45 = graphModel.factory().newEdge(node4, node5, false);
    undirectedGraph.addEdge(edge12);
    undirectedGraph.addEdge(edge13);
    undirectedGraph.addEdge(edge34);
    undirectedGraph.addEdge(edge24);
    undirectedGraph.addEdge(edge56);
    undirectedGraph.addEdge(edge67);
    undirectedGraph.addEdge(edge78);
    undirectedGraph.addEdge(edge85);
    undirectedGraph.addEdge(edge45);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph hierarchicalUndirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(hierarchicalUndirectedGraph);
    d.calculateDistanceMetrics(graphModel.getGraph(), indicies, false, false);
    double diameter = d.getDiameter();
    assertEquals(diameter, 5.0, TOLERANCE);
}

Example 85 with UndirectedGraph

use of org.gephi.graph.api.UndirectedGraph in project gephi by gephi.

the class GraphDistanceNGTest method testCompleteGraphAvPathLength.

@Test
public void testCompleteGraphAvPathLength() {
    GraphModel graphModel = GraphGenerator.generateCompleteUndirectedGraph(5);
    GraphDistance d = new GraphDistance();
    d.initializeStartValues();
    UndirectedGraph undirectedGraph = graphModel.getUndirectedGraph();
    HashMap<Node, Integer> indicies = d.createIndiciesMap(undirectedGraph);
    d.calculateDistanceMetrics(graphModel.getGraph(), indicies, false, false);
    double averageDegree = d.getPathLength();
    assertEquals(averageDegree, 1.0, TOLERANCE);
}