Examples with DatasetRegistryGitHubRemote org.globalbioticinteractions.dataset.DatasetRegistryGitHubRemote used on opensource projects

Example 6 with DatasetRegistryGitHubRemote

use of org.globalbioticinteractions.dataset.DatasetRegistryGitHubRemote in project eol-globi-data by jhpoelen.

the class DatasetImporterFactoryImplIT method createArthopodEasyCapture.

@Test
public void createArthopodEasyCapture() throws StudyImporterException, DatasetRegistryException {
    final DatasetRegistryGitHubRemote datasetFinderGitHubRemote = new DatasetRegistryGitHubRemote(inStream -> inStream);
    DatasetImporter importer = importerFor(datasetFinderGitHubRemote, "globalbioticinteractions/arthropodEasyCaptureAMNH");
    assertThat(importer, is(notNullValue()));
    assertThat(importer, is(instanceOf(DatasetImporterForRSS.class)));
    assertThat(((DatasetImporterForRSS) importer).getRssFeedUrlString(), is(notNullValue()));
}

Example 7 with DatasetRegistryGitHubRemote

use of org.globalbioticinteractions.dataset.DatasetRegistryGitHubRemote in project eol-globi-data by jhpoelen.

the class DatasetImporterFactoryImplIT method defaultTSVImporterNotCached.

@Test
public void defaultTSVImporterNotCached() throws StudyImporterException, DatasetRegistryException, IOException {
    final DatasetRegistry datasetRegistry = new DatasetRegistryGitHubRemote(inStream -> inStream);
    DatasetImporter importer = getTemplateImporter(datasetRegistry, "globalbioticinteractions/template-dataset");
    assertThat(((DatasetImporterForTSV) importer).getBaseUrl(), startsWith("https://raw.githubusercontent.com/globalbioticinteractions/template-dataset/"));
    InputStream actual = ((DatasetImporterForTSV) importer).getDataset().retrieve(URI.create("globi.json"));
    assertThat(actual, is(notNullValue()));
}

Example 8 with DatasetRegistryGitHubRemote

use of org.globalbioticinteractions.dataset.DatasetRegistryGitHubRemote in project eol-globi-data by jhpoelen.

the class DatasetImporterFactoryImplIT method createSIAD.

@Test
public void createSIAD() throws StudyImporterException, DatasetRegistryException {
    final DatasetRegistryGitHubRemote datasetFinderGitHubRemote = new DatasetRegistryGitHubRemote(inStream -> inStream);
    DatasetImporter importer = importerFor(datasetFinderGitHubRemote, "globalbioticinteractions/siad");
    assertThat(importer, is(notNullValue()));
    Dataset dataset = ((BaseDatasetImporter) importer).getDataset();
    final JsonNode config = dataset.getConfig();
    assertThat(config, is(notNullValue()));
    assertThat(dataset.getOrDefault(DatasetConstant.SHOULD_RESOLVE_REFERENCES, "donald"), is("false"));
}

Example 9 with DatasetRegistryGitHubRemote

use of org.globalbioticinteractions.dataset.DatasetRegistryGitHubRemote in project eol-globi-data by jhpoelen.

the class DatasetImporterFactoryImplIT method createSzoboszlai.

@Test
public void createSzoboszlai() throws StudyImporterException, DatasetRegistryException {
    final DatasetRegistryGitHubRemote datasetFinderGitHubRemote = new DatasetRegistryGitHubRemote(inStream -> inStream);
    DatasetImporter importer = importerFor(datasetFinderGitHubRemote, "globalbioticinteractions/szoboszlai2015");
    assertThat(importer, is(notNullValue()));
    assertThat(importer, is(instanceOf(DatasetImporterForSzoboszlai.class)));
    DatasetImporterForSzoboszlai importerz = (DatasetImporterForSzoboszlai) importer;
    assertThat(importerz.getSourceCitation(), containsString("Szoboszlai"));
}

Example 10 with DatasetRegistryGitHubRemote

use of org.globalbioticinteractions.dataset.DatasetRegistryGitHubRemote in project eol-globi-data by jhpoelen.

the class DatasetImporterFactoryImplIT method createWood.

@Test
public void createWood() throws StudyImporterException, DatasetRegistryException, IOException {
    final DatasetRegistryGitHubRemote datasetFinderGitHubRemote = new DatasetRegistryGitHubRemote(inStream -> inStream);
    DatasetImporter importer = importerFor(datasetFinderGitHubRemote, "globalbioticinteractions/wood2015");
    assertThat(importer, is(notNullValue()));
    assertThat(importer, is(instanceOf(DatasetImporterForWood.class)));
    DatasetImporterForWood importerz = (DatasetImporterForWood) importer;
    assertThat(importerz.getSourceCitation(), containsString("Wood"));
    assertThat(importerz.getDataset().retrieve(URI.create("links")).toString(), is(notNullValue()));
}