Examples with GATInvocationException org.gridlab.gat.GATInvocationException used on opensource projects

Example 1 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class GATJob method processMetricEvent.

// MetricListener interface implementation
@Override
public void processMetricEvent(MetricEvent value) {
    Job job = (Job) value.getSource();
    JobState newJobState = (JobState) value.getValue();
    JobDescription jd = (JobDescription) job.getJobDescription();
    SoftwareDescription sd = jd.getSoftwareDescription();
    Integer jobId = (Integer) sd.getAttributes().get("jobId");
    logger.debug("Processing job ID = " + jobId);
    /*
         * Check if either the job has finished or there has been a submission error. We don't care about other state
         * transitions
         */
    if (newJobState == JobState.STOPPED) {
        if (Tracer.isActivated()) {
            Integer slot = (Integer) sd.getAttributes().get("slot");
            String host = getResourceNode().getHost();
            Tracer.freeSlot(host, slot);
        }
        /*
             * We must check whether the chosen adaptor is globus In that case, since globus doesn't provide the exit
             * status of a job, we must examine the standard error file
             */
        try {
            if (usingGlobus) {
                File errFile = sd.getStderr();
                // Error file should always be in the same host as the IT
                File localFile = GAT.createFile(context, errFile.toGATURI());
                if (localFile.length() > 0) {
                    GATjob = null;
                    RUNNING_JOBS.remove(this);
                    ErrorManager.warn("Error when creating file.");
                    listener.jobFailed(this, JobEndStatus.EXECUTION_FAILED);
                } else {
                    if (!debug) {
                        localFile.delete();
                    }
                    RUNNING_JOBS.remove(this);
                    listener.jobCompleted(this);
                }
            } else {
                if (job.getExitStatus() == 0) {
                    RUNNING_JOBS.remove(this);
                    listener.jobCompleted(this);
                } else {
                    GATjob = null;
                    RUNNING_JOBS.remove(this);
                    listener.jobFailed(this, JobEndStatus.EXECUTION_FAILED);
                }
            }
        } catch (Exception e) {
            ErrorManager.fatal(CALLBACK_PROCESSING_ERR + ": " + this, e);
        }
    } else if (newJobState == JobState.SUBMISSION_ERROR) {
        if (Tracer.isActivated()) {
            Integer slot = (Integer) sd.getAttributes().get("slot");
            String host = getResourceNode().getHost();
            Tracer.freeSlot(host, slot);
        }
        try {
            if (usingGlobus && job.getInfo().get("resManError").equals("NO_ERROR")) {
                RUNNING_JOBS.remove(this);
                listener.jobCompleted(this);
            } else {
                GATjob = null;
                RUNNING_JOBS.remove(this);
                listener.jobFailed(this, JobEndStatus.SUBMISSION_FAILED);
            }
        } catch (GATInvocationException e) {
            ErrorManager.fatal(CALLBACK_PROCESSING_ERR + ": " + this, e);
        }
    }
}

Example 2 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class GATCopy method specificCopy.

@Override
public void specificCopy() throws CopyException {
    LOGGER.debug(DBG_PREFIX + "Performing GAT Specific Copy for " + getName());
    // Fetch valid destination URIs
    List<MultiURI> targetURIs = tgtLoc.getURIs();
    List<URI> selectedTargetURIs = new LinkedList<>();
    for (MultiURI uri : targetURIs) {
        try {
            URI internalURI = (URI) uri.getInternalURI(GATAdaptor.ID);
            if (internalURI != null) {
                selectedTargetURIs.add(internalURI);
            }
        } catch (UnstartedNodeException une) {
            throw new GATCopyException(une);
        }
    }
    if (selectedTargetURIs.isEmpty()) {
        LOGGER.error(DBG_PREFIX + ERR_NO_TGT_URI);
        throw new GATCopyException(ERR_NO_TGT_URI);
    }
    LOGGER.debug(DBG_PREFIX + "Selected target URIs");
    // Fetch valid source URIs
    List<MultiURI> sourceURIs;
    List<URI> selectedSourceURIs = new LinkedList<>();
    synchronized (srcData) {
        if (srcLoc != null) {
            sourceURIs = srcLoc.getURIs();
            for (MultiURI uri : sourceURIs) {
                try {
                    URI internalURI = (URI) uri.getInternalURI(GATAdaptor.ID);
                    if (internalURI != null) {
                        selectedSourceURIs.add(internalURI);
                    }
                } catch (UnstartedNodeException une) {
                    LOGGER.error(DBG_PREFIX + "Exception selecting source URI");
                    throw new GATCopyException(une);
                }
            }
        }
        sourceURIs = srcData.getURIs();
        for (MultiURI uri : sourceURIs) {
            try {
                URI internalURI = (URI) uri.getInternalURI(GATAdaptor.ID);
                if (internalURI != null) {
                    selectedSourceURIs.add(internalURI);
                }
            } catch (UnstartedNodeException une) {
                LOGGER.error(DBG_PREFIX + "Exception selecting source URI for " + getName());
                throw new GATCopyException(une);
            }
        }
        if (selectedSourceURIs.isEmpty()) {
            if (srcData.isInMemory()) {
                LOGGER.debug("Data for " + getName() + " is in memory");
                try {
                    srcData.writeToStorage();
                    sourceURIs = srcData.getURIs();
                    for (MultiURI uri : sourceURIs) {
                        URI internalURI = (URI) uri.getInternalURI(GATAdaptor.ID);
                        if (internalURI != null) {
                            selectedSourceURIs.add(internalURI);
                        }
                    }
                } catch (Exception e) {
                    LOGGER.fatal("Exception writing object to file.", e);
                    throw new GATCopyException(ERR_NO_SRC_URI);
                }
            } else {
                LOGGER.error(DBG_PREFIX + ERR_NO_SRC_URI);
                throw new GATCopyException(ERR_NO_SRC_URI);
            }
        }
    }
    GATInvocationException exception = new GATInvocationException("default logical file");
    for (URI src : selectedSourceURIs) {
        for (URI tgt : selectedTargetURIs) {
            try {
                if (LOGGER.isDebugEnabled()) {
                    LOGGER.debug("GATCopy From: " + src + " to " + tgt);
                }
                // Source and target URIs contain Runtime information (schema)
                // Convert it to GAT format
                URI gatSrc = new URI(DataLocation.Protocol.ANY_URI.getSchema() + src.getHost() + "/" + src.getPath());
                URI gatTgt = new URI(DataLocation.Protocol.ANY_URI.getSchema() + tgt.getHost() + "/" + tgt.getPath());
                if (LOGGER.isDebugEnabled()) {
                    LOGGER.debug("GATCopy From: " + gatSrc + " to " + gatTgt);
                }
                doCopy(gatSrc, gatTgt);
            // Try to copy from each location until successful
            } catch (Exception e) {
                exception.add("default logical file", e);
                LOGGER.warn("Error copying file", e);
                continue;
            }
            return;
        }
    }
    if (!(this.reason instanceof WorkersDebugInfoCopyTransferable)) {
        ErrorManager.error("File '" + srcData.getName() + "' could not be copied because it does not exist.", exception);
    }
    throw new GATCopyException(exception);
}

Example 3 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class GATCopy method doCopy.

private void doCopy(org.gridlab.gat.URI src, org.gridlab.gat.URI dest) throws GATCopyException {
    // Try to copy from each location until successful
    FileInterface f = null;
    LOGGER.debug("RawPath: " + src.getRawPath());
    LOGGER.debug("isLocal: " + src.isLocal());
    if (src.isLocal() && !(new File(src.getRawPath())).exists()) {
        String errorMessage = null;
        if (this.reason instanceof WorkersDebugInfoCopyTransferable) {
            // Only warn, hide error to ErrorManager
            errorMessage = "Workers Debug Information not supported in GAT Adaptor";
            LOGGER.warn(errorMessage);
        } else {
            // Notify error to ErrorManager
            errorMessage = "File '" + src.toString() + "' could not be copied to '" + dest.toString() + "' because it does not exist.";
            ErrorManager.warn(errorMessage);
            LOGGER.warn(errorMessage);
        }
        throw new GATCopyException(errorMessage);
    }
    try {
        f = org.gridlab.gat.GAT.createFile(GATAdaptor.getTransferContext(), src).getFileInterface();
        f.copy(dest);
    } catch (GATObjectCreationException | GATInvocationException e) {
        throw new GATCopyException(e);
    }
}

Example 4 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class LoadLevelerFileAdaptor method listFiles.

/*
     * (non-Javadoc)
     * 
     * @see org.gridlab.gat.io.File#listFiles(java.io.FileFilter)
     */
public org.gridlab.gat.io.File[] listFiles(FileFilter arg0) throws GATInvocationException {
    File[] r = f.listFiles(arg0);
    ArrayList<File> l = new ArrayList<File>();
    for (int i = 0; i < r.length; i++) {
        if (!(ignoreHiddenFiles && r[i].isHidden())) {
            l.add(r[i]);
        }
    }
    org.gridlab.gat.io.File[] res = new org.gridlab.gat.io.File[r.length];
    for (int i = 0; i < res.length; i++) {
        try {
            res[i] = GAT.createFile(gatContext, localToURI(l.get(i).getPath()));
        } catch (Exception e) {
            throw new GATInvocationException("LoadLevelerFile", e);
        }
    }
    return res;
}

Example 5 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class LoadLevelerFileAdaptor method copy.

private static void copy(File in, File out) throws GATInvocationException {
    FileInputStream inBuf = null;
    FileOutputStream outBuf = null;
    try {
        out.createNewFile();
        // Copy source to destination
        inBuf = new FileInputStream(in);
        outBuf = new FileOutputStream(out);
    } catch (IOException e) {
        throw new GATInvocationException("LoadLevelerFile", e);
    }
    try {
        byte[] buf = new byte[8192];
        for (; ; ) {
            int len = inBuf.read(buf);
            if (len < 0) {
                break;
            }
            outBuf.write(buf, 0, len);
        }
    } catch (IOException e) {
        throw new GATInvocationException("LoadLevelerFile", e);
    } finally {
        if (outBuf != null) {
            try {
                outBuf.close();
            } catch (IOException e) {
                throw new GATInvocationException("LoadLevelerFile", e);
            }
        }
        if (inBuf != null) {
            try {
                inBuf.close();
            } catch (IOException e) {
                throw new GATInvocationException("LoadLevelerFile", e);
            }
        }
    }
}