Examples with GATInvocationException org.gridlab.gat.GATInvocationException used on opensource projects

Example 56 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class SshLsfResourceBrokerAdaptor method submitJob.

public Job submitJob(AbstractJobDescription abstractDescription, MetricListener listener, String metricDefinitionName) throws GATInvocationException {
    if (!(abstractDescription instanceof JobDescription)) {
        throw new GATInvocationException("can only handle JobDescriptions: " + abstractDescription.getClass());
    }
    JobDescription description = (JobDescription) ((JobDescription) abstractDescription).clone();
    SoftwareDescription sd = description.getSoftwareDescription();
    int nproc = description.getProcessCount();
    if (sd.streamingStderrEnabled() || sd.streamingStdinEnabled() || sd.streamingStdoutEnabled()) {
        throw new GATInvocationException("Streaming I/O not supported by SshLSF adaptor");
    }
    String authority = getAuthority();
    if (authority == null) {
        authority = "localhost";
    }
    // Create filename for return value.
    String returnValueFile = ".rc." + Math.random();
    /*java.io.File jobScriptFile = createJobScript(description);
    	java.io.File jobStarterFile = null;
    	if (nproc > 1) {
    	    jobStarterFile = createJobStarter(description, nproc, jobScriptFile);
    	}*/
    java.io.File bsubFile = createBsubScript(description, returnValueFile, nproc);
    if (logger.isDebugEnabled()) {
        logger.debug("**** Adding pre and post staging:\n  " + sd);
    }
    try {
        // Careful, you may be running on windows, so add a scheme.
        sd.addPostStagedFile(GAT.createFile(gatContext, new URI(returnValueFile)));
    } catch (Throwable e) {
        throw new GATInvocationException("Error in file staging", e);
    }
    ResourceBroker subBroker;
    try {
        subBroker = subResourceBroker(getSubContext(gatContext), brokerURI);
    } catch (Throwable e) {
        throw new GATInvocationException("Could not create subbroker to submit LSF jobs through ssh", e);
    }
    Sandbox sandbox = new Sandbox(gatContext, description, authority, null, true, true, true, true);
    SshLSFJob sshLSFJob = new SshLSFJob(gatContext, brokerURI, description, sandbox, subBroker, returnValueFile);
    Job job = null;
    if (description instanceof WrapperJobDescription) {
        WrapperJobCpi tmp = new WrapperJobCpi(gatContext, sshLSFJob, listener, metricDefinitionName);
        listener = tmp;
        job = tmp;
    } else {
        job = sshLSFJob;
    }
    if (listener != null && metricDefinitionName != null) {
        Metric metric = sshLSFJob.getMetricDefinitionByName(metricDefinitionName).createMetric(null);
        sshLSFJob.addMetricListener(listener, metric);
    }
    if (logger.isDebugEnabled()) {
        logger.debug("*******We are going to perform the ssh submission: ");
    }
    String jobid = sshLsfSubmission(sshLSFJob, description, bsubFile, subBroker, sandbox);
    if (jobid != null) {
        sshLSFJob.setState(Job.JobState.SCHEDULED);
        sshLSFJob.setSoft(description.getSoftwareDescription());
        sshLSFJob.setJobID(jobid);
        sshLSFJob.startListener();
    } else {
        // sandbox.removeSandboxDir();
        throw new GATInvocationException("Could not submit sshLSF job");
    }
    bsubFile.delete();
    return job;
}

Example 57 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class FileAdaptorTest method lengthTest.

private AdaptorTestResultEntry lengthTest(GATContext gatContext, Preferences preferences, String host, String filename, int tabs, long correctValue) {
    FileInterface file = null;
    try {
        file = GAT.createFile(gatContext, preferences, "any://" + host + "/" + filename).getFileInterface();
    } catch (GATObjectCreationException e) {
        return new AdaptorTestResultEntry(false, 0, e);
    }
    long start = System.currentTimeMillis();
    long length;
    try {
        length = file.length();
    } catch (GATInvocationException e) {
        return new AdaptorTestResultEntry(false, 0, e);
    }
    long stop = System.currentTimeMillis();
    return new AdaptorTestResultEntry(length == correctValue, (stop - start), null);
}

Example 58 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class FileAdaptorTest method canReadTest.

private AdaptorTestResultEntry canReadTest(GATContext gatContext, Preferences preferences, String host, String filename, int tabs, boolean correctValue) {
    FileInterface file = null;
    try {
        file = GAT.createFile(gatContext, preferences, "any://" + host + "/" + filename).getFileInterface();
    } catch (GATObjectCreationException e) {
        return new AdaptorTestResultEntry(false, 0, e);
    }
    long start = System.currentTimeMillis();
    boolean readable;
    try {
        readable = file.canRead();
    } catch (GATInvocationException e) {
        return new AdaptorTestResultEntry(false, 0, e);
    }
    long stop = System.currentTimeMillis();
    return new AdaptorTestResultEntry(readable == correctValue, (stop - start), null);
}

Example 59 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class FileAdaptorTest method run.

private void run(String host, String script) {
    Preferences preferences = new Preferences();
    preferences.put("resourcebroker.adaptor.name", "commandlinessh,sshtrilead,local");
    preferences.put("file.adaptor.name", "commandlinessh,sshtrilead,local");
    SoftwareDescription sd = new SoftwareDescription();
    sd.setExecutable("/bin/bash");
    sd.setArguments(script);
    try {
        sd.addPreStagedFile(GAT.createFile(preferences, "tests" + java.io.File.separator + "src" + java.io.File.separator + "benchmarks" + java.io.File.separator + script));
    } catch (GATObjectCreationException e) {
        e.printStackTrace();
        System.exit(1);
    }
    ResourceBroker broker = null;
    try {
        broker = GAT.createResourceBroker(preferences, new URI("any://" + host));
    } catch (GATObjectCreationException e) {
        e.printStackTrace();
        System.exit(1);
    } catch (URISyntaxException e) {
        e.printStackTrace();
        System.exit(1);
    }
    Job job = null;
    try {
        job = broker.submitJob(new JobDescription(sd));
    } catch (GATInvocationException e) {
        e.printStackTrace();
        System.exit(1);
    }
    while (job.getState() != Job.JobState.STOPPED && job.getState() != Job.JobState.SUBMISSION_ERROR) {
        try {
            Thread.sleep(500);
        } catch (InterruptedException e) {
        // ignored
        }
    }
}

Example 60 with GATInvocationException

use of org.gridlab.gat.GATInvocationException in project compss by bsc-wdc.

the class FileAdaptorTest method listTest.

private AdaptorTestResultEntry listTest(GATContext gatContext, Preferences preferences, String host, String filename, int tabs, String... correctValue) {
    FileInterface file = null;
    try {
        file = GAT.createFile(gatContext, preferences, "any://" + host + "/" + filename).getFileInterface();
    } catch (GATObjectCreationException e) {
        return new AdaptorTestResultEntry(false, 0, e);
    }
    long start = System.currentTimeMillis();
    String[] list;
    try {
        list = file.list();
    } catch (GATInvocationException e) {
        return new AdaptorTestResultEntry(false, 0, e);
    }
    long stop = System.currentTimeMillis();
    return new AdaptorTestResultEntry(isCorrect(list, correctValue), (stop - start), null);
}