Examples with URI org.gridlab.gat.URI used on opensource projects

Example 6 with URI

use of org.gridlab.gat.URI in project compss by bsc-wdc.

the class LoadLevelerFileAdaptor method getFile.

private File getFile(URI location) {
    File file;
    URI correctedURI = newcorrectURI(location);
    logger.debug("corrected uri '" + location + "' to '" + correctedURI + "'");
    if ((correctedURI.getPath() == null) || (correctedURI.getPath().equals(""))) {
        file = new File(".");
    } else {
        String path = correctedURI.getPath();
        if (java.io.File.separatorChar == '\\') {
            // This means we're on a Windows machine!
            if (path.startsWith("/")) {
                path = path.substring(1);
            }
            path = path.replace("/", "\\");
        }
        file = new File(path);
    }
    return file;
}

Example 7 with URI

use of org.gridlab.gat.URI in project compss by bsc-wdc.

the class LoadLevelerFileAdaptor method renameTo.

/*
     * (non-Javadoc)
     * 
     * @see org.gridlab.gat.io.File#renameTo(java.io.File)
     */
public boolean renameTo(org.gridlab.gat.io.File arg0) throws GATInvocationException {
    URI arg = arg0.toGATURI();
    File tmp = getFile(arg);
    return f.renameTo(tmp);
}

Example 8 with URI

use of org.gridlab.gat.URI in project compss by bsc-wdc.

the class LsfFileAdaptor method getFile.

private File getFile(URI location) {
    File file;
    URI correctedURI = newcorrectURI(location);
    logger.debug("corrected uri '" + location + "' to '" + correctedURI + "'");
    if ((correctedURI.getPath() == null) || (correctedURI.getPath().equals(""))) {
        file = new File(".");
    } else {
        String path = correctedURI.getPath();
        if (java.io.File.separatorChar == '\\') {
            // This means we're on a Windows machine!
            if (path.startsWith("/")) {
                path = path.substring(1);
            }
            path = path.replace("/", "\\");
        }
        file = new File(path);
    }
    return file;
}

Example 9 with URI

use of org.gridlab.gat.URI in project compss by bsc-wdc.

the class LsfFileAdaptor method renameTo.

/*
     * (non-Javadoc)
     * 
     * @see org.gridlab.gat.io.File#renameTo(java.io.File)
     */
public boolean renameTo(org.gridlab.gat.io.File arg0) throws GATInvocationException {
    URI arg = arg0.toGATURI();
    File tmp = getFile(arg);
    return f.renameTo(tmp);
}

Example 10 with URI

use of org.gridlab.gat.URI in project compss by bsc-wdc.

the class SshLSFJob method getJobState.

protected void getJobState(String jobID) throws GATInvocationException {
    synchronized (this) {
        while (jobStateBusy) {
            try {
                wait();
            } catch (InterruptedException e) {
            // ignored
            }
        }
        jobStateBusy = true;
    }
    JobState resultState;
    try {
        if (state == JobState.POST_STAGING || state == JobState.STOPPED || state == JobState.SUBMISSION_ERROR) {
            return;
        }
        logger.debug("Getting task status in setState()");
        // getting the status via ssh ... squeue
        java.io.File squeueResultFile = null;
        try {
            // Create qstat job
            SoftwareDescription sd = new SoftwareDescription();
            // Use /bin/sh, so that $USER gets expanded.
            sd.setExecutable("/bin/sh");
            sd.setArguments("-c", "bjobs -noheader " + jobID + " | awk {' print $3 '}");
            sd.addAttribute(SoftwareDescription.SANDBOX_USEROOT, "true");
            squeueResultFile = java.io.File.createTempFile("GAT", "tmp");
            try {
                sd.setStdout(GAT.createFile(subContext, new URI("file:///" + squeueResultFile.getAbsolutePath().replace(File.separatorChar, '/'))));
            } catch (Throwable e1) {
                throw new GATInvocationException("Could not create GAT object for temporary " + squeueResultFile.getAbsolutePath(), e1);
            }
            JobDescription jd = new JobDescription(sd);
            Job job = jobHelper.submitJob(jd, this, "job.status");
            synchronized (job) {
                while (job.getState() != Job.JobState.STOPPED && job.getState() != Job.JobState.SUBMISSION_ERROR) {
                    try {
                        job.wait();
                    } catch (InterruptedException e) {
                    // ignore
                    }
                }
            }
            if (job.getState() != Job.JobState.STOPPED || job.getExitStatus() != 0) {
                throw new GATInvocationException("Could not submit squeue job " + sd.toString());
            }
            // submit success.
            BufferedReader in = new BufferedReader(new FileReader(squeueResultFile.getAbsolutePath()));
            String status = in.readLine();
            // or finished. Set to "" in this case. --Ceriel
            if (status == null) {
                status = "";
            }
            if (logger.isDebugEnabled()) {
                logger.debug("squeue line: " + status);
            }
            resultState = mapLSFStatetoGAT(status);
        } catch (IOException e) {
            logger.debug("retrieving job status sshslurmjob failed", e);
            throw new GATInvocationException("Unable to retrieve the Job Status", e);
        } finally {
            squeueResultFile.delete();
        }
    } finally {
        synchronized (this) {
            jobStateBusy = false;
            notifyAll();
        }
    }
    if (resultState != JobState.STOPPED) {
        setState(resultState);
    } else {
        setState(JobState.POST_STAGING);
    }
}