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Example 26 with JobDescription

use of org.gridlab.gat.resources.JobDescription in project compss by bsc-wdc.

the class ResourceBrokerAdaptorTest method submitJobStdout.

private AdaptorTestResultEntry submitJobStdout(GATContext gatContext, Preferences preferences, String host) {
    SoftwareDescription sd = new SoftwareDescription();
    sd.setExecutable("/bin/echo");
    // Arguments modified to test against expansion of shell meta characters --Ceriel
    sd.setArguments("test", "1", "2", "'*");
    try {
        sd.setStdout(GAT.createFile(gatContext, preferences, "stdout"));
    } catch (GATObjectCreationException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    JobDescription jd = new JobDescription(sd);
    ResourceBroker broker;
    try {
        broker = GAT.createResourceBroker(gatContext, preferences, new URI(host));
    } catch (GATObjectCreationException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    } catch (URISyntaxException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    long start = System.currentTimeMillis();
    Job job;
    try {
        job = broker.submitJob(jd, this, "job.status");
    } catch (GATInvocationException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    waitForJob();
    try {
        Map<String, Object> info = job.getInfo();
        Throwable ex = (Throwable) info.get("poststage.exception");
        if (ex != null) {
            return new AdaptorTestResultEntry(false, 0L, ex);
        }
    } catch (GATInvocationException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    long stop = System.currentTimeMillis();
    String result;
    try {
        BufferedReader reader = new BufferedReader(new InputStreamReader(new java.io.FileInputStream("stdout")));
        result = reader.readLine();
        reader.close();
    } catch (Exception e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    return new AdaptorTestResultEntry("test 1 2 '*".equals(result), (stop - start), null);
}
Also used : GATObjectCreationException(org.gridlab.gat.GATObjectCreationException) InputStreamReader(java.io.InputStreamReader) ResourceBroker(org.gridlab.gat.resources.ResourceBroker) URISyntaxException(java.net.URISyntaxException) URI(org.gridlab.gat.URI) SoftwareDescription(org.gridlab.gat.resources.SoftwareDescription) URISyntaxException(java.net.URISyntaxException) GATInvocationException(org.gridlab.gat.GATInvocationException) IOException(java.io.IOException) GATObjectCreationException(org.gridlab.gat.GATObjectCreationException) JobDescription(org.gridlab.gat.resources.JobDescription) GATInvocationException(org.gridlab.gat.GATInvocationException) BufferedReader(java.io.BufferedReader) Job(org.gridlab.gat.resources.Job)

Example 27 with JobDescription

use of org.gridlab.gat.resources.JobDescription in project compss by bsc-wdc.

the class ResourceBrokerAdaptorTest method submitJobPostStage.

private AdaptorTestResultEntry submitJobPostStage(GATContext gatContext, Preferences preferences, String host) {
    SoftwareDescription sd = new SoftwareDescription();
    sd.setExecutable("/bin/touch");
    sd.setArguments("flap.txt");
    try {
        sd.addPostStagedFile(GAT.createFile(gatContext, preferences, "flap.txt"));
    } catch (GATObjectCreationException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    JobDescription jd = new JobDescription(sd);
    ResourceBroker broker;
    try {
        broker = GAT.createResourceBroker(gatContext, preferences, new URI(host));
    } catch (GATObjectCreationException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    } catch (URISyntaxException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    long start = System.currentTimeMillis();
    Job job;
    try {
        job = broker.submitJob(jd, this, "job.status");
    } catch (GATInvocationException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    waitForJob();
    try {
        Map<String, Object> info = job.getInfo();
        Throwable ex = (Throwable) info.get("poststage.exception");
        if (ex != null) {
            return new AdaptorTestResultEntry(false, 0L, ex);
        }
    } catch (GATInvocationException e) {
        return new AdaptorTestResultEntry(false, 0L, e);
    }
    long stop = System.currentTimeMillis();
    return new AdaptorTestResultEntry(new java.io.File("flap.txt").exists(), (stop - start), null);
}
Also used : GATObjectCreationException(org.gridlab.gat.GATObjectCreationException) ResourceBroker(org.gridlab.gat.resources.ResourceBroker) URISyntaxException(java.net.URISyntaxException) URI(org.gridlab.gat.URI) SoftwareDescription(org.gridlab.gat.resources.SoftwareDescription) JobDescription(org.gridlab.gat.resources.JobDescription) GATInvocationException(org.gridlab.gat.GATInvocationException) Job(org.gridlab.gat.resources.Job)

Example 28 with JobDescription

use of org.gridlab.gat.resources.JobDescription in project compss by bsc-wdc.

the class SshLsfResourceBrokerAdaptor method submitJob.

public Job submitJob(AbstractJobDescription abstractDescription, MetricListener listener, String metricDefinitionName) throws GATInvocationException {
    if (!(abstractDescription instanceof JobDescription)) {
        throw new GATInvocationException("can only handle JobDescriptions: " + abstractDescription.getClass());
    }
    JobDescription description = (JobDescription) ((JobDescription) abstractDescription).clone();
    SoftwareDescription sd = description.getSoftwareDescription();
    int nproc = description.getProcessCount();
    if (sd.streamingStderrEnabled() || sd.streamingStdinEnabled() || sd.streamingStdoutEnabled()) {
        throw new GATInvocationException("Streaming I/O not supported by SshLSF adaptor");
    }
    String authority = getAuthority();
    if (authority == null) {
        authority = "localhost";
    }
    // Create filename for return value.
    String returnValueFile = ".rc." + Math.random();
    /*java.io.File jobScriptFile = createJobScript(description);
    	java.io.File jobStarterFile = null;
    	if (nproc > 1) {
    	    jobStarterFile = createJobStarter(description, nproc, jobScriptFile);
    	}*/
    java.io.File bsubFile = createBsubScript(description, returnValueFile, nproc);
    if (logger.isDebugEnabled()) {
        logger.debug("**** Adding pre and post staging:\n  " + sd);
    }
    try {
        // Careful, you may be running on windows, so add a scheme.
        sd.addPostStagedFile(GAT.createFile(gatContext, new URI(returnValueFile)));
    } catch (Throwable e) {
        throw new GATInvocationException("Error in file staging", e);
    }
    ResourceBroker subBroker;
    try {
        subBroker = subResourceBroker(getSubContext(gatContext), brokerURI);
    } catch (Throwable e) {
        throw new GATInvocationException("Could not create subbroker to submit LSF jobs through ssh", e);
    }
    Sandbox sandbox = new Sandbox(gatContext, description, authority, null, true, true, true, true);
    SshLSFJob sshLSFJob = new SshLSFJob(gatContext, brokerURI, description, sandbox, subBroker, returnValueFile);
    Job job = null;
    if (description instanceof WrapperJobDescription) {
        WrapperJobCpi tmp = new WrapperJobCpi(gatContext, sshLSFJob, listener, metricDefinitionName);
        listener = tmp;
        job = tmp;
    } else {
        job = sshLSFJob;
    }
    if (listener != null && metricDefinitionName != null) {
        Metric metric = sshLSFJob.getMetricDefinitionByName(metricDefinitionName).createMetric(null);
        sshLSFJob.addMetricListener(listener, metric);
    }
    if (logger.isDebugEnabled()) {
        logger.debug("*******We are going to perform the ssh submission: ");
    }
    String jobid = sshLsfSubmission(sshLSFJob, description, bsubFile, subBroker, sandbox);
    if (jobid != null) {
        sshLSFJob.setState(Job.JobState.SCHEDULED);
        sshLSFJob.setSoft(description.getSoftwareDescription());
        sshLSFJob.setJobID(jobid);
        sshLSFJob.startListener();
    } else {
        // sandbox.removeSandboxDir();
        throw new GATInvocationException("Could not submit sshLSF job");
    }
    bsubFile.delete();
    return job;
}
Also used : ResourceBroker(org.gridlab.gat.resources.ResourceBroker) URI(org.gridlab.gat.URI) SoftwareDescription(org.gridlab.gat.resources.SoftwareDescription) File(java.io.File) Sandbox(org.gridlab.gat.resources.cpi.Sandbox) JobDescription(org.gridlab.gat.resources.JobDescription) WrapperJobDescription(org.gridlab.gat.resources.WrapperJobDescription) AbstractJobDescription(org.gridlab.gat.resources.AbstractJobDescription) GATInvocationException(org.gridlab.gat.GATInvocationException) WrapperJobCpi(org.gridlab.gat.resources.cpi.WrapperJobCpi) Metric(org.gridlab.gat.monitoring.Metric) Job(org.gridlab.gat.resources.Job) WrapperJobDescription(org.gridlab.gat.resources.WrapperJobDescription)

Example 29 with JobDescription

use of org.gridlab.gat.resources.JobDescription in project compss by bsc-wdc.

the class FileAdaptorTest method run.

private void run(String host, String script) {
    Preferences preferences = new Preferences();
    preferences.put("resourcebroker.adaptor.name", "commandlinessh,sshtrilead,local");
    preferences.put("file.adaptor.name", "commandlinessh,sshtrilead,local");
    SoftwareDescription sd = new SoftwareDescription();
    sd.setExecutable("/bin/bash");
    sd.setArguments(script);
    try {
        sd.addPreStagedFile(GAT.createFile(preferences, "tests" + java.io.File.separator + "src" + java.io.File.separator + "benchmarks" + java.io.File.separator + script));
    } catch (GATObjectCreationException e) {
        e.printStackTrace();
        System.exit(1);
    }
    ResourceBroker broker = null;
    try {
        broker = GAT.createResourceBroker(preferences, new URI("any://" + host));
    } catch (GATObjectCreationException e) {
        e.printStackTrace();
        System.exit(1);
    } catch (URISyntaxException e) {
        e.printStackTrace();
        System.exit(1);
    }
    Job job = null;
    try {
        job = broker.submitJob(new JobDescription(sd));
    } catch (GATInvocationException e) {
        e.printStackTrace();
        System.exit(1);
    }
    while (job.getState() != Job.JobState.STOPPED && job.getState() != Job.JobState.SUBMISSION_ERROR) {
        try {
            Thread.sleep(500);
        } catch (InterruptedException e) {
        // ignored
        }
    }
}
Also used : JobDescription(org.gridlab.gat.resources.JobDescription) GATObjectCreationException(org.gridlab.gat.GATObjectCreationException) GATInvocationException(org.gridlab.gat.GATInvocationException) ResourceBroker(org.gridlab.gat.resources.ResourceBroker) URISyntaxException(java.net.URISyntaxException) Preferences(org.gridlab.gat.Preferences) Job(org.gridlab.gat.resources.Job) URI(org.gridlab.gat.URI) SoftwareDescription(org.gridlab.gat.resources.SoftwareDescription)

Example 30 with JobDescription

use of org.gridlab.gat.resources.JobDescription in project compss by bsc-wdc.

the class FileOutputStreamAdaptorTest method run.

private void run(String host, String script) {
    Preferences preferences = new Preferences();
    preferences.put("resourcebroker.adaptor.name", "commandlinessh,sshtrilead,local");
    preferences.put("file.adaptor.name", "commandlinessh,sshtrilead,local");
    SoftwareDescription sd = new SoftwareDescription();
    sd.setExecutable("/bin/bash");
    sd.setArguments(script);
    try {
        sd.addPreStagedFile(GAT.createFile(preferences, "tests" + java.io.File.separator + "src" + java.io.File.separator + "benchmarks" + java.io.File.separator + script));
    } catch (GATObjectCreationException e) {
        e.printStackTrace();
        System.exit(1);
    }
    ResourceBroker broker = null;
    try {
        broker = GAT.createResourceBroker(preferences, new URI("any://" + host));
    } catch (GATObjectCreationException e) {
        e.printStackTrace();
        System.exit(1);
    } catch (URISyntaxException e) {
        e.printStackTrace();
        System.exit(1);
    }
    Job job = null;
    try {
        job = broker.submitJob(new JobDescription(sd));
    } catch (GATInvocationException e) {
        e.printStackTrace();
        System.exit(1);
    }
    while (job.getState() != Job.JobState.STOPPED && job.getState() != Job.JobState.SUBMISSION_ERROR) {
        try {
            Thread.sleep(500);
        } catch (InterruptedException e) {
        // ignored
        }
    }
}
Also used : JobDescription(org.gridlab.gat.resources.JobDescription) GATObjectCreationException(org.gridlab.gat.GATObjectCreationException) GATInvocationException(org.gridlab.gat.GATInvocationException) ResourceBroker(org.gridlab.gat.resources.ResourceBroker) URISyntaxException(java.net.URISyntaxException) Preferences(org.gridlab.gat.Preferences) Job(org.gridlab.gat.resources.Job) URI(org.gridlab.gat.URI) SoftwareDescription(org.gridlab.gat.resources.SoftwareDescription)

Aggregations

JobDescription (org.gridlab.gat.resources.JobDescription)33 SoftwareDescription (org.gridlab.gat.resources.SoftwareDescription)31 URI (org.gridlab.gat.URI)28 ResourceBroker (org.gridlab.gat.resources.ResourceBroker)26 Job (org.gridlab.gat.resources.Job)25 GATInvocationException (org.gridlab.gat.GATInvocationException)24 GATObjectCreationException (org.gridlab.gat.GATObjectCreationException)18 URISyntaxException (java.net.URISyntaxException)17 IOException (java.io.IOException)10 Preferences (org.gridlab.gat.Preferences)8 File (org.gridlab.gat.io.File)8 BufferedReader (java.io.BufferedReader)6 WrapperJobDescription (org.gridlab.gat.resources.WrapperJobDescription)5 InputStreamReader (java.io.InputStreamReader)4 AbstractJobDescription (org.gridlab.gat.resources.AbstractJobDescription)4 File (java.io.File)3 InputStream (java.io.InputStream)3 HashMap (java.util.HashMap)3 GATContext (org.gridlab.gat.GATContext)3 Metric (org.gridlab.gat.monitoring.Metric)3