Examples with IdentifiableObjectCallable org.hisp.dhis.system.callable.IdentifiableObjectCallable used on opensource projects

Example 1 with IdentifiableObjectCallable

use of org.hisp.dhis.system.callable.IdentifiableObjectCallable in project dhis2-core by dhis2.

the class DefaultAdxDataService method saveDataValueSetInternal.

private ImportSummary saveDataValueSetInternal(InputStream in, ImportOptions importOptions, TaskId id) {
    notifier.clear(id).notify(id, "ADX parsing process started");
    ImportOptions adxImportOptions = ObjectUtils.firstNonNull(importOptions, ImportOptions.getDefaultImportOptions()).instance().setNotificationLevel(NotificationLevel.OFF);
    // Get import options
    IdScheme dataSetIdScheme = importOptions.getIdSchemes().getDataSetIdScheme();
    IdScheme dataElementIdScheme = importOptions.getIdSchemes().getDataElementIdScheme();
    // Create meta-data maps
    CachingMap<String, DataSet> dataSetMap = new CachingMap<>();
    CachingMap<String, DataElement> dataElementMap = new CachingMap<>();
    // Get meta-data maps
    IdentifiableObjectCallable<DataSet> dataSetCallable = new IdentifiableObjectCallable<>(identifiableObjectManager, DataSet.class, dataSetIdScheme, null);
    IdentifiableObjectCallable<DataElement> dataElementCallable = new IdentifiableObjectCallable<>(identifiableObjectManager, DataElement.class, dataElementIdScheme, null);
    // Heat cache
    if (importOptions.isPreheatCacheDefaultFalse()) {
        dataSetMap.load(identifiableObjectManager.getAll(DataSet.class), o -> o.getPropertyValue(dataSetIdScheme));
        dataElementMap.load(identifiableObjectManager.getAll(DataElement.class), o -> o.getPropertyValue(dataElementIdScheme));
    }
    XMLReader adxReader = XMLFactory.getXMLReader(in);
    ImportSummary importSummary;
    adxReader.moveToStartElement(AdxDataService.ROOT, AdxDataService.NAMESPACE);
    ExecutorService executor = Executors.newSingleThreadExecutor();
    // Give the DXF import a different notification task ID so it doesn't conflict with notifications from this level.
    TaskId dxfTaskId = new TaskId(TaskCategory.DATAVALUE_IMPORT_INTERNAL, id.getUser());
    int groupCount = 0;
    try (PipedOutputStream pipeOut = new PipedOutputStream()) {
        Future<ImportSummary> futureImportSummary = executor.submit(new AdxPipedImporter(dataValueSetService, adxImportOptions, dxfTaskId, pipeOut, sessionFactory));
        XMLOutputFactory factory = XMLOutputFactory.newInstance();
        XMLStreamWriter dxfWriter = factory.createXMLStreamWriter(pipeOut);
        List<ImportConflict> adxConflicts = new LinkedList<>();
        dxfWriter.writeStartDocument("1.0");
        dxfWriter.writeStartElement("dataValueSet");
        dxfWriter.writeDefaultNamespace("http://dhis2.org/schema/dxf/2.0");
        notifier.notify(id, "Starting to import ADX data groups.");
        while (adxReader.moveToStartElement(AdxDataService.GROUP, AdxDataService.NAMESPACE)) {
            notifier.update(id, "Importing ADX data group: " + groupCount);
            // note this returns conflicts which are detected at ADX level
            adxConflicts.addAll(parseAdxGroupToDxf(adxReader, dxfWriter, adxImportOptions, dataSetMap, dataSetCallable, dataElementMap, dataElementCallable));
            groupCount++;
        }
        // end dataValueSet
        dxfWriter.writeEndElement();
        dxfWriter.writeEndDocument();
        pipeOut.flush();
        importSummary = futureImportSummary.get(TOTAL_MINUTES_TO_WAIT, TimeUnit.MINUTES);
        importSummary.getConflicts().addAll(adxConflicts);
        importSummary.getImportCount().incrementIgnored(adxConflicts.size());
    } catch (AdxException ex) {
        importSummary = new ImportSummary();
        importSummary.setStatus(ImportStatus.ERROR);
        importSummary.setDescription("Data set import failed within group number: " + groupCount);
        importSummary.getConflicts().add(ex.getImportConflict());
        notifier.update(id, NotificationLevel.ERROR, "ADX data import done", true);
        log.warn("Import failed: " + DebugUtils.getStackTrace(ex));
    } catch (IOException | XMLStreamException | InterruptedException | ExecutionException | TimeoutException ex) {
        importSummary = new ImportSummary();
        importSummary.setStatus(ImportStatus.ERROR);
        importSummary.setDescription("Data set import failed within group number: " + groupCount);
        notifier.update(id, NotificationLevel.ERROR, "ADX data import done", true);
        log.warn("Import failed: " + DebugUtils.getStackTrace(ex));
    }
    executor.shutdown();
    notifier.update(id, INFO, "ADX data import done", true).addTaskSummary(id, importSummary);
    ImportCount c = importSummary.getImportCount();
    log.info("ADX data import done, imported: " + c.getImported() + ", updated: " + c.getUpdated() + ", deleted: " + c.getDeleted() + ", ignored: " + c.getIgnored());
    return importSummary;
}

Example 2 with IdentifiableObjectCallable

use of org.hisp.dhis.system.callable.IdentifiableObjectCallable in project dhis2-core by dhis2.

the class DefaultAdxDataService method saveDataValueSetInternal.

private ImportSummary saveDataValueSetInternal(InputStream in, ImportOptions importOptions, JobConfiguration id) {
    notifier.clear(id).notify(id, "ADX parsing process started");
    ImportOptions adxImportOptions = firstNonNull(importOptions, ImportOptions.getDefaultImportOptions()).instance().setNotificationLevel(NotificationLevel.OFF);
    // Get import options
    IdScheme dsScheme = importOptions.getIdSchemes().getDataSetIdScheme();
    IdScheme deScheme = importOptions.getIdSchemes().getDataElementIdScheme();
    // Create meta-data maps
    CachingMap<String, DataSet> dataSetMap = new CachingMap<>();
    CachingMap<String, DataElement> dataElementMap = new CachingMap<>();
    // Get meta-data maps
    IdentifiableObjectCallable<DataSet> dataSetCallable = new IdentifiableObjectCallable<>(identifiableObjectManager, DataSet.class, dsScheme, null);
    IdentifiableObjectCallable<DataElement> dataElementCallable = new IdentifiableObjectCallable<>(identifiableObjectManager, DataElement.class, deScheme, null);
    // Heat cache
    if (importOptions.isPreheatCacheDefaultFalse()) {
        dataSetMap.load(identifiableObjectManager.getAll(DataSet.class), o -> o.getPropertyValue(dsScheme));
        dataElementMap.load(identifiableObjectManager.getAll(DataElement.class), o -> o.getPropertyValue(deScheme));
    }
    XMLReader adxReader = XMLFactory.getXMLReader(in);
    ImportSummary importSummary;
    adxReader.moveToStartElement(AdxDataService.ROOT, AdxDataService.NAMESPACE);
    ExecutorService executor = Executors.newSingleThreadExecutor();
    // For Async runs, give the DXF import a different notification task ID
    // so it doesn't conflict with notifications from this level.
    JobConfiguration dxfJobId = (id == null) ? null : new JobConfiguration("dxfJob", JobType.DATAVALUE_IMPORT_INTERNAL, id.getUserUid(), true);
    int groupCount = 0;
    try (PipedOutputStream pipeOut = new PipedOutputStream()) {
        Future<ImportSummary> futureImportSummary = executor.submit(new AdxPipedImporter(dataValueSetService, adxImportOptions, dxfJobId, pipeOut, sessionFactory));
        XMLOutputFactory factory = XMLOutputFactory.newInstance();
        XMLStreamWriter dxfWriter = factory.createXMLStreamWriter(pipeOut);
        List<ImportConflict> adxConflicts = new LinkedList<>();
        dxfWriter.writeStartDocument("1.0");
        dxfWriter.writeStartElement("dataValueSet");
        dxfWriter.writeDefaultNamespace("http://dhis2.org/schema/dxf/2.0");
        notifier.notify(id, "Starting to import ADX data groups.");
        while (adxReader.moveToStartElement(AdxDataService.GROUP, AdxDataService.NAMESPACE)) {
            notifier.update(id, "Importing ADX data group: " + groupCount);
            // note this returns conflicts which are detected at ADX level
            adxConflicts.addAll(parseAdxGroupToDxf(adxReader, dxfWriter, adxImportOptions, dataSetMap, dataSetCallable, dataElementMap, dataElementCallable));
            groupCount++;
        }
        // end dataValueSet
        dxfWriter.writeEndElement();
        dxfWriter.writeEndDocument();
        pipeOut.flush();
        importSummary = futureImportSummary.get(TOTAL_MINUTES_TO_WAIT, TimeUnit.MINUTES);
        ImportSummary summary = importSummary;
        adxConflicts.forEach(conflict -> summary.addConflict(conflict.getObject(), conflict.getValue()));
        importSummary.getImportCount().incrementIgnored(adxConflicts.size());
    } catch (AdxException ex) {
        importSummary = new ImportSummary();
        importSummary.setStatus(ImportStatus.ERROR);
        importSummary.setDescription("Data set import failed within group number: " + groupCount);
        importSummary.addConflict(ex.getObject(), ex.getMessage());
        notifier.update(id, NotificationLevel.ERROR, "ADX data import done", true);
        log.warn("Import failed: " + DebugUtils.getStackTrace(ex));
    } catch (IOException | XMLStreamException | InterruptedException | ExecutionException | TimeoutException ex) {
        importSummary = new ImportSummary();
        importSummary.setStatus(ImportStatus.ERROR);
        importSummary.setDescription("Data set import failed within group number: " + groupCount);
        notifier.update(id, NotificationLevel.ERROR, "ADX data import done", true);
        log.warn("Import failed: " + DebugUtils.getStackTrace(ex));
    }
    executor.shutdown();
    notifier.update(id, INFO, "ADX data import done", true).addJobSummary(id, importSummary, ImportSummary.class);
    ImportCount c = importSummary.getImportCount();
    log.info("ADX data import done, imported: " + c.getImported() + ", updated: " + c.getUpdated() + ", deleted: " + c.getDeleted() + ", ignored: " + c.getIgnored());
    return importSummary;
}

Example 3 with IdentifiableObjectCallable

use of org.hisp.dhis.system.callable.IdentifiableObjectCallable in project dhis2-core by dhis2.

the class DefaultDataValueSetService method saveDataValueSet.

/**
     * There are specific id schemes for data elements and organisation units and
     * a generic id scheme for all objects. The specific id schemes will take
     * precedence over the generic id scheme. The generic id scheme also applies
     * to data set and category option combo.
     * <p>
     * The id schemes uses the following order of precedence:
     * <p>
     * <ul>
     * <li>Id scheme from the data value set</li>
     * <li>Id scheme from the import options</li>
     * <li>Default id scheme which is UID</li>
     * <ul>
     * <p>
     * If id scheme is specific in the data value set, any id schemes in the import
     * options will be ignored.
     *
     * @param importOptions
     * @param id
     * @param dataValueSet
     * @return
     */
private ImportSummary saveDataValueSet(ImportOptions importOptions, TaskId id, DataValueSet dataValueSet) {
    importOptions = ObjectUtils.firstNonNull(importOptions, ImportOptions.getDefaultImportOptions());
    Clock clock = new Clock(log).startClock().logTime("Starting data value import, options: " + importOptions);
    NotificationLevel notificationLevel = importOptions.getNotificationLevel(INFO);
    notifier.clear(id).notify(id, notificationLevel, "Process started");
    ImportSummary summary = new ImportSummary().setImportOptions(importOptions);
    boolean isIso8601 = calendarService.getSystemCalendar().isIso8601();
    boolean skipLockExceptionCheck = !lockExceptionStore.anyExists();
    log.info(String.format("Is ISO calendar: %b, skip lock exception check: %b", isIso8601, skipLockExceptionCheck));
    I18n i18n = i18nManager.getI18n();
    // ---------------------------------------------------------------------
    // Get import options
    // ---------------------------------------------------------------------
    log.info("Import options: " + importOptions);
    IdScheme dvSetIdScheme = IdScheme.from(dataValueSet.getIdSchemeProperty());
    IdScheme dvSetDataElementIdScheme = IdScheme.from(dataValueSet.getDataElementIdSchemeProperty());
    IdScheme dvSetOrgUnitIdScheme = IdScheme.from(dataValueSet.getOrgUnitIdSchemeProperty());
    IdScheme dvSetCategoryOptComboIdScheme = IdScheme.from(dataValueSet.getCategoryOptionComboIdSchemeProperty());
    IdScheme dvSetDataSetIdScheme = IdScheme.from(dataValueSet.getDataSetIdSchemeProperty());
    log.info("Data value set identifier scheme: " + dvSetIdScheme + ", data element: " + dvSetDataElementIdScheme + ", org unit: " + dvSetOrgUnitIdScheme + ", category option combo: " + dvSetCategoryOptComboIdScheme + ", data set: " + dvSetDataSetIdScheme);
    IdScheme idScheme = dvSetIdScheme.isNotNull() ? dvSetIdScheme : importOptions.getIdSchemes().getIdScheme();
    IdScheme dataElementIdScheme = dvSetDataElementIdScheme.isNotNull() ? dvSetDataElementIdScheme : importOptions.getIdSchemes().getDataElementIdScheme();
    IdScheme orgUnitIdScheme = dvSetOrgUnitIdScheme.isNotNull() ? dvSetOrgUnitIdScheme : importOptions.getIdSchemes().getOrgUnitIdScheme();
    IdScheme categoryOptComboIdScheme = dvSetCategoryOptComboIdScheme.isNotNull() ? dvSetCategoryOptComboIdScheme : importOptions.getIdSchemes().getCategoryOptionComboIdScheme();
    IdScheme dataSetIdScheme = dvSetDataSetIdScheme.isNotNull() ? dvSetDataSetIdScheme : importOptions.getIdSchemes().getDataSetIdScheme();
    log.info("Identifier scheme: " + idScheme + ", data element: " + dataElementIdScheme + ", org unit: " + orgUnitIdScheme + ", category option combo: " + categoryOptComboIdScheme + ", data set: " + dataSetIdScheme);
    ImportStrategy strategy = dataValueSet.getStrategy() != null ? ImportStrategy.valueOf(dataValueSet.getStrategy()) : importOptions.getImportStrategy();
    boolean dryRun = dataValueSet.getDryRun() != null ? dataValueSet.getDryRun() : importOptions.isDryRun();
    boolean skipExistingCheck = importOptions.isSkipExistingCheck();
    boolean strictPeriods = importOptions.isStrictPeriods() || (Boolean) systemSettingManager.getSystemSetting(SettingKey.DATA_IMPORT_STRICT_PERIODS);
    boolean strictCategoryOptionCombos = importOptions.isStrictCategoryOptionCombos() || (Boolean) systemSettingManager.getSystemSetting(SettingKey.DATA_IMPORT_STRICT_CATEGORY_OPTION_COMBOS);
    boolean strictAttrOptionCombos = importOptions.isStrictAttributeOptionCombos() || (Boolean) systemSettingManager.getSystemSetting(SettingKey.DATA_IMPORT_STRICT_ATTRIBUTE_OPTION_COMBOS);
    boolean strictOrgUnits = importOptions.isStrictOrganisationUnits() || (Boolean) systemSettingManager.getSystemSetting(SettingKey.DATA_IMPORT_STRICT_ORGANISATION_UNITS);
    boolean requireCategoryOptionCombo = importOptions.isRequireCategoryOptionCombo() || (Boolean) systemSettingManager.getSystemSetting(SettingKey.DATA_IMPORT_REQUIRE_CATEGORY_OPTION_COMBO);
    boolean requireAttrOptionCombo = importOptions.isRequireAttributeOptionCombo() || (Boolean) systemSettingManager.getSystemSetting(SettingKey.DATA_IMPORT_REQUIRE_ATTRIBUTE_OPTION_COMBO);
    // ---------------------------------------------------------------------
    // Create meta-data maps
    // ---------------------------------------------------------------------
    CachingMap<String, DataElement> dataElementMap = new CachingMap<>();
    CachingMap<String, OrganisationUnit> orgUnitMap = new CachingMap<>();
    CachingMap<String, DataElementCategoryOptionCombo> optionComboMap = new CachingMap<>();
    CachingMap<String, DataSet> dataElementDataSetMap = new CachingMap<>();
    CachingMap<String, Period> periodMap = new CachingMap<>();
    CachingMap<String, Set<PeriodType>> dataElementPeriodTypesMap = new CachingMap<>();
    CachingMap<String, Set<DataElementCategoryOptionCombo>> dataElementCategoryOptionComboMap = new CachingMap<>();
    CachingMap<String, Set<DataElementCategoryOptionCombo>> dataElementAttrOptionComboMap = new CachingMap<>();
    CachingMap<String, Boolean> dataElementOrgUnitMap = new CachingMap<>();
    CachingMap<String, Boolean> dataSetLockedMap = new CachingMap<>();
    CachingMap<String, Period> dataElementLatestFuturePeriodMap = new CachingMap<>();
    CachingMap<String, Boolean> orgUnitInHierarchyMap = new CachingMap<>();
    CachingMap<String, DateRange> attrOptionComboDateRangeMap = new CachingMap<>();
    CachingMap<String, Boolean> attrOptionComboOrgUnitMap = new CachingMap<>();
    CachingMap<String, Optional<Set<String>>> dataElementOptionsMap = new CachingMap<>();
    CachingMap<String, Boolean> approvalMap = new CachingMap<>();
    CachingMap<String, Boolean> lowestApprovalLevelMap = new CachingMap<>();
    CachingMap<String, Boolean> periodOpenForDataElement = new CachingMap<>();
    // ---------------------------------------------------------------------
    // Get meta-data maps
    // ---------------------------------------------------------------------
    IdentifiableObjectCallable<DataElement> dataElementCallable = new IdentifiableObjectCallable<>(identifiableObjectManager, DataElement.class, dataElementIdScheme, null);
    IdentifiableObjectCallable<OrganisationUnit> orgUnitCallable = new IdentifiableObjectCallable<>(identifiableObjectManager, OrganisationUnit.class, orgUnitIdScheme, trimToNull(dataValueSet.getOrgUnit()));
    IdentifiableObjectCallable<DataElementCategoryOptionCombo> categoryOptionComboCallable = new CategoryOptionComboAclCallable(categoryService, categoryOptComboIdScheme, null);
    IdentifiableObjectCallable<DataElementCategoryOptionCombo> attributeOptionComboCallable = new CategoryOptionComboAclCallable(categoryService, categoryOptComboIdScheme, null);
    IdentifiableObjectCallable<Period> periodCallable = new PeriodCallable(periodService, null, trimToNull(dataValueSet.getPeriod()));
    if (importOptions.isPreheatCacheDefaultFalse()) {
        dataElementMap.load(identifiableObjectManager.getAll(DataElement.class), o -> o.getPropertyValue(dataElementIdScheme));
        orgUnitMap.load(identifiableObjectManager.getAll(OrganisationUnit.class), o -> o.getPropertyValue(orgUnitIdScheme));
        optionComboMap.load(identifiableObjectManager.getAll(DataElementCategoryOptionCombo.class), o -> o.getPropertyValue(categoryOptComboIdScheme));
    }
    // ---------------------------------------------------------------------
    // Get outer meta-data
    // ---------------------------------------------------------------------
    DataSet dataSet = dataValueSet.getDataSet() != null ? identifiableObjectManager.getObject(DataSet.class, dataSetIdScheme, dataValueSet.getDataSet()) : null;
    Date completeDate = parseDate(dataValueSet.getCompleteDate());
    Period outerPeriod = periodMap.get(trimToNull(dataValueSet.getPeriod()), periodCallable);
    OrganisationUnit outerOrgUnit = orgUnitMap.get(trimToNull(dataValueSet.getOrgUnit()), orgUnitCallable);
    DataElementCategoryOptionCombo fallbackCategoryOptionCombo = categoryService.getDefaultDataElementCategoryOptionCombo();
    DataElementCategoryOptionCombo outerAttrOptionCombo = null;
    if (dataValueSet.getAttributeOptionCombo() != null) {
        outerAttrOptionCombo = optionComboMap.get(trimToNull(dataValueSet.getAttributeOptionCombo()), attributeOptionComboCallable.setId(trimToNull(dataValueSet.getAttributeOptionCombo())));
    } else if (dataValueSet.getAttributeCategoryOptions() != null) {
        outerAttrOptionCombo = inputUtils.getAttributeOptionCombo(dataSet.getCategoryCombo(), new HashSet<String>(dataValueSet.getAttributeCategoryOptions()), idScheme);
    }
    if (dataSet == null && trimToNull(dataValueSet.getDataSet()) != null) {
        summary.getConflicts().add(new ImportConflict(dataValueSet.getDataSet(), "Data set not found or not accessible"));
        summary.setStatus(ImportStatus.ERROR);
    }
    if (outerOrgUnit == null && trimToNull(dataValueSet.getOrgUnit()) != null) {
        summary.getConflicts().add(new ImportConflict(dataValueSet.getDataSet(), "Org unit not found or not accessible"));
        summary.setStatus(ImportStatus.ERROR);
    }
    if (outerAttrOptionCombo == null && trimToNull(dataValueSet.getAttributeOptionCombo()) != null) {
        summary.getConflicts().add(new ImportConflict(dataValueSet.getDataSet(), "Attribute option combo not found or not accessible"));
        summary.setStatus(ImportStatus.ERROR);
    }
    if (ImportStatus.ERROR.equals(summary.getStatus())) {
        summary.setDescription("Import process was aborted");
        notifier.notify(id, WARN, "Import process aborted", true).addTaskSummary(id, summary);
        dataValueSet.close();
        return summary;
    }
    if (dataSet != null && completeDate != null) {
        notifier.notify(id, notificationLevel, "Completing data set");
        //TODO
        handleComplete(dataSet, completeDate, outerPeriod, outerOrgUnit, fallbackCategoryOptionCombo, summary);
    } else {
        summary.setDataSetComplete(Boolean.FALSE.toString());
    }
    final String currentUser = currentUserService.getCurrentUsername();
    final Set<OrganisationUnit> currentOrgUnits = currentUserService.getCurrentUserOrganisationUnits();
    BatchHandler<DataValue> dataValueBatchHandler = batchHandlerFactory.createBatchHandler(DataValueBatchHandler.class).init();
    BatchHandler<DataValueAudit> auditBatchHandler = batchHandlerFactory.createBatchHandler(DataValueAuditBatchHandler.class).init();
    int importCount = 0;
    int updateCount = 0;
    int deleteCount = 0;
    int totalCount = 0;
    // ---------------------------------------------------------------------
    // Data values
    // ---------------------------------------------------------------------
    Date now = new Date();
    clock.logTime("Validated outer meta-data");
    notifier.notify(id, notificationLevel, "Importing data values");
    while (dataValueSet.hasNextDataValue()) {
        org.hisp.dhis.dxf2.datavalue.DataValue dataValue = dataValueSet.getNextDataValue();
        totalCount++;
        final DataElement dataElement = dataElementMap.get(trimToNull(dataValue.getDataElement()), dataElementCallable.setId(trimToNull(dataValue.getDataElement())));
        final Period period = outerPeriod != null ? outerPeriod : periodMap.get(trimToNull(dataValue.getPeriod()), periodCallable.setId(trimToNull(dataValue.getPeriod())));
        final OrganisationUnit orgUnit = outerOrgUnit != null ? outerOrgUnit : orgUnitMap.get(trimToNull(dataValue.getOrgUnit()), orgUnitCallable.setId(trimToNull(dataValue.getOrgUnit())));
        DataElementCategoryOptionCombo categoryOptionCombo = optionComboMap.get(trimToNull(dataValue.getCategoryOptionCombo()), categoryOptionComboCallable.setId(trimToNull(dataValue.getCategoryOptionCombo())));
        DataElementCategoryOptionCombo attrOptionCombo = outerAttrOptionCombo != null ? outerAttrOptionCombo : optionComboMap.get(trimToNull(dataValue.getAttributeOptionCombo()), attributeOptionComboCallable.setId(trimToNull(dataValue.getAttributeOptionCombo())));
        if (!dataElementMap.isCacheLoaded() && dataElementMap.getCacheMissCount() > CACHE_MISS_THRESHOLD) {
            dataElementMap.load(identifiableObjectManager.getAll(DataElement.class), o -> o.getPropertyValue(dataElementIdScheme));
            log.info("Data element cache heated after cache miss threshold reached");
        }
        if (!orgUnitMap.isCacheLoaded() && orgUnitMap.getCacheMissCount() > CACHE_MISS_THRESHOLD) {
            orgUnitMap.load(identifiableObjectManager.getAll(OrganisationUnit.class), o -> o.getPropertyValue(orgUnitIdScheme));
            log.info("Org unit cache heated after cache miss threshold reached");
        }
        if (dataElement == null) {
            summary.getConflicts().add(new ImportConflict(dataValue.getDataElement(), "Data element not found or not accessible"));
            continue;
        }
        if (period == null) {
            summary.getConflicts().add(new ImportConflict(dataValue.getPeriod(), "Period not valid"));
            continue;
        }
        if (orgUnit == null) {
            summary.getConflicts().add(new ImportConflict(dataValue.getOrgUnit(), "Organisation unit not found or not accessible"));
            continue;
        }
        if (categoryOptionCombo == null && trimToNull(dataValue.getCategoryOptionCombo()) != null) {
            summary.getConflicts().add(new ImportConflict(dataValue.getCategoryOptionCombo(), "Category option combo not found or not accessible"));
            continue;
        }
        if (attrOptionCombo == null && trimToNull(dataValue.getAttributeOptionCombo()) != null) {
            summary.getConflicts().add(new ImportConflict(dataValue.getAttributeOptionCombo(), "Attribute option combo not found or not accessible"));
            continue;
        }
        boolean inUserHierarchy = orgUnitInHierarchyMap.get(orgUnit.getUid(), () -> orgUnit.isDescendant(currentOrgUnits));
        if (!inUserHierarchy) {
            summary.getConflicts().add(new ImportConflict(orgUnit.getUid(), "Organisation unit not in hierarchy of current user: " + currentUser));
            continue;
        }
        if (dataValue.isNullValue() && !dataValue.isDeletedValue()) {
            summary.getConflicts().add(new ImportConflict("Value", "Data value or comment not specified for data element: " + dataElement.getUid()));
            continue;
        }
        dataValue.setValueForced(ValidationUtils.normalizeBoolean(dataValue.getValue(), dataElement.getValueType()));
        String valueValid = ValidationUtils.dataValueIsValid(dataValue.getValue(), dataElement);
        if (valueValid != null) {
            summary.getConflicts().add(new ImportConflict(dataValue.getValue(), i18n.getString(valueValid) + ", must match data element type: " + dataElement.getUid()));
            continue;
        }
        String commentValid = ValidationUtils.commentIsValid(dataValue.getComment());
        if (commentValid != null) {
            summary.getConflicts().add(new ImportConflict("Comment", i18n.getString(commentValid)));
            continue;
        }
        Optional<Set<String>> optionCodes = dataElementOptionsMap.get(dataElement.getUid(), () -> dataElement.hasOptionSet() ? Optional.of(dataElement.getOptionSet().getOptionCodesAsSet()) : Optional.empty());
        if (optionCodes.isPresent() && !optionCodes.get().contains(dataValue.getValue())) {
            summary.getConflicts().add(new ImportConflict(dataValue.getValue(), "Data value is not a valid option of the data element option set: " + dataElement.getUid()));
            continue;
        }
        if (categoryOptionCombo == null) {
            if (requireCategoryOptionCombo) {
                summary.getConflicts().add(new ImportConflict(dataValue.getValue(), "Category option combo is required but is not specified"));
                continue;
            } else {
                categoryOptionCombo = fallbackCategoryOptionCombo;
            }
        }
        if (attrOptionCombo == null) {
            if (requireAttrOptionCombo) {
                summary.getConflicts().add(new ImportConflict(dataValue.getValue(), "Attribute option combo is required but is not specified"));
                continue;
            } else {
                attrOptionCombo = fallbackCategoryOptionCombo;
            }
        }
        if (strictPeriods && !dataElementPeriodTypesMap.get(dataElement.getUid(), () -> dataElement.getPeriodTypes()).contains(period.getPeriodType())) {
            summary.getConflicts().add(new ImportConflict(dataValue.getPeriod(), "Period type of period: " + period.getIsoDate() + " not valid for data element: " + dataElement.getUid()));
            continue;
        }
        if (strictCategoryOptionCombos && !dataElementCategoryOptionComboMap.get(dataElement.getUid(), () -> dataElement.getCategoryOptionCombos()).contains(categoryOptionCombo)) {
            summary.getConflicts().add(new ImportConflict(categoryOptionCombo.getUid(), "Category option combo: " + categoryOptionCombo.getUid() + " must be part of category combo of data element: " + dataElement.getUid()));
            continue;
        }
        if (strictAttrOptionCombos && !dataElementAttrOptionComboMap.get(dataElement.getUid(), () -> dataElement.getDataSetCategoryOptionCombos()).contains(attrOptionCombo)) {
            summary.getConflicts().add(new ImportConflict(attrOptionCombo.getUid(), "Attribute option combo: " + attrOptionCombo.getUid() + " must be part of category combo of data sets of data element: " + dataElement.getUid()));
            continue;
        }
        if (strictOrgUnits && BooleanUtils.isFalse(dataElementOrgUnitMap.get(dataElement.getUid() + orgUnit.getUid(), () -> orgUnit.hasDataElement(dataElement)))) {
            summary.getConflicts().add(new ImportConflict(orgUnit.getUid(), "Data element: " + dataElement.getUid() + " must be assigned through data sets to organisation unit: " + orgUnit.getUid()));
            continue;
        }
        boolean zeroInsignificant = ValidationUtils.dataValueIsZeroAndInsignificant(dataValue.getValue(), dataElement);
        if (zeroInsignificant) {
            summary.getConflicts().add(new ImportConflict(dataValue.getValue(), "Value is zero and not significant, must match data element: " + dataElement.getUid()));
            continue;
        }
        String storedByValid = ValidationUtils.storedByIsValid(dataValue.getStoredBy());
        if (storedByValid != null) {
            summary.getConflicts().add(new ImportConflict(dataValue.getStoredBy(), i18n.getString(storedByValid)));
            continue;
        }
        String storedBy = dataValue.getStoredBy() == null || dataValue.getStoredBy().trim().isEmpty() ? currentUser : dataValue.getStoredBy();
        final DataElementCategoryOptionCombo aoc = attrOptionCombo;
        DateRange aocDateRange = attrOptionComboDateRangeMap.get(attrOptionCombo.getUid(), () -> aoc.getDateRange());
        if ((aocDateRange.getStartDate() != null && aocDateRange.getStartDate().compareTo(period.getStartDate()) > 0) || (aocDateRange.getEndDate() != null && aocDateRange.getEndDate().compareTo(period.getEndDate()) < 0)) {
            summary.getConflicts().add(new ImportConflict(orgUnit.getUid(), "Period: " + period.getIsoDate() + " is not within date range of attribute option combo: " + attrOptionCombo.getUid()));
            continue;
        }
        if (!attrOptionComboOrgUnitMap.get(attrOptionCombo.getUid() + orgUnit.getUid(), () -> {
            Set<OrganisationUnit> aocOrgUnits = aoc.getOrganisationUnits();
            return aocOrgUnits == null || orgUnit.isDescendant(aocOrgUnits);
        })) {
            summary.getConflicts().add(new ImportConflict(orgUnit.getUid(), "Organisation unit: " + orgUnit.getUid() + " is not valid for attribute option combo: " + attrOptionCombo.getUid()));
            continue;
        }
        final DataSet approvalDataSet = dataSet != null ? dataSet : dataElementDataSetMap.get(dataElement.getUid(), () -> dataElement.getApprovalDataSet());
        if (// Data element is assigned to at least one data set
        approvalDataSet != null) {
            if (dataSetLockedMap.get(approvalDataSet.getUid() + period.getUid() + orgUnit.getUid(), () -> isLocked(approvalDataSet, period, orgUnit, skipLockExceptionCheck))) {
                summary.getConflicts().add(new ImportConflict(period.getIsoDate(), "Current date is past expiry days for period " + period.getIsoDate() + " and data set: " + approvalDataSet.getUid()));
                continue;
            }
            Period latestFuturePeriod = dataElementLatestFuturePeriodMap.get(dataElement.getUid(), () -> dataElement.getLatestOpenFuturePeriod());
            if (period.isAfter(latestFuturePeriod) && isIso8601) {
                summary.getConflicts().add(new ImportConflict(period.getIsoDate(), "Period: " + period.getIsoDate() + " is after latest open future period: " + latestFuturePeriod.getIsoDate() + " for data element: " + dataElement.getUid()));
                continue;
            }
            DataApprovalWorkflow workflow = approvalDataSet.getWorkflow();
            if (workflow != null) {
                final String workflowPeriodAoc = workflow.getUid() + period.getUid() + attrOptionCombo.getUid();
                if (approvalMap.get(orgUnit.getUid() + workflowPeriodAoc, () -> {
                    DataApproval lowestApproval = DataApproval.getLowestApproval(new DataApproval(null, workflow, period, orgUnit, aoc));
                    return lowestApprovalLevelMap.get(lowestApproval.getDataApprovalLevel().getUid() + lowestApproval.getOrganisationUnit().getUid() + workflowPeriodAoc, () -> approvalService.getDataApproval(lowestApproval) != null);
                })) {
                    summary.getConflicts().add(new ImportConflict(orgUnit.getUid(), "Data is already approved for data set: " + approvalDataSet.getUid() + " period: " + period.getIsoDate() + " organisation unit: " + orgUnit.getUid() + " attribute option combo: " + attrOptionCombo.getUid()));
                    continue;
                }
            }
        }
        if (approvalDataSet != null && !approvalDataSet.isDataInputPeriodAndDateAllowed(period, new Date())) {
            summary.getConflicts().add(new ImportConflict(orgUnit.getUid(), "Period: " + period.getIsoDate() + " is not open for this data set at this time: " + approvalDataSet.getUid()));
            continue;
        }
        if (!periodOpenForDataElement.get(dataElement.getUid() + period.getIsoDate(), () -> dataElement.isDataInputAllowedForPeriodAndDate(period, new Date()))) {
            summary.getConflicts().add(new ImportConflict(orgUnit.getUid(), "Period " + period.getName() + " does not conform to the open periods of associated data sets"));
            continue;
        }
        // -----------------------------------------------------------------
        // Create data value
        // -----------------------------------------------------------------
        DataValue internalValue = new DataValue();
        internalValue.setDataElement(dataElement);
        internalValue.setPeriod(period);
        internalValue.setSource(orgUnit);
        internalValue.setCategoryOptionCombo(categoryOptionCombo);
        internalValue.setAttributeOptionCombo(attrOptionCombo);
        internalValue.setValue(trimToNull(dataValue.getValue()));
        internalValue.setStoredBy(storedBy);
        internalValue.setCreated(dataValue.hasCreated() ? parseDate(dataValue.getCreated()) : now);
        internalValue.setLastUpdated(dataValue.hasLastUpdated() ? parseDate(dataValue.getLastUpdated()) : now);
        internalValue.setComment(trimToNull(dataValue.getComment()));
        internalValue.setFollowup(dataValue.getFollowup());
        internalValue.setDeleted(BooleanUtils.isTrue(dataValue.getDeleted()));
        // -----------------------------------------------------------------
        // Save, update or delete data value
        // -----------------------------------------------------------------
        DataValue existingValue = !skipExistingCheck ? dataValueBatchHandler.findObject(internalValue) : null;
        if (!skipExistingCheck && existingValue != null && !existingValue.isDeleted()) {
            if (strategy.isCreateAndUpdate() || strategy.isUpdate()) {
                DataValueAudit auditValue = new DataValueAudit(internalValue, existingValue.getValue(), storedBy, AuditType.UPDATE);
                if (internalValue.isNullValue() || internalValue.isDeleted()) {
                    internalValue.setDeleted(true);
                    auditValue.setAuditType(AuditType.DELETE);
                    deleteCount++;
                } else {
                    updateCount++;
                }
                if (!dryRun) {
                    dataValueBatchHandler.updateObject(internalValue);
                    auditBatchHandler.addObject(auditValue);
                }
            } else if (strategy.isDelete()) {
                DataValueAudit auditValue = new DataValueAudit(internalValue, existingValue.getValue(), storedBy, AuditType.DELETE);
                internalValue.setDeleted(true);
                deleteCount++;
                if (!dryRun) {
                    dataValueBatchHandler.updateObject(internalValue);
                    auditBatchHandler.addObject(auditValue);
                }
            }
        } else {
            if (strategy.isCreateAndUpdate() || strategy.isCreate()) {
                if (// Ignore null values
                !internalValue.isNullValue()) {
                    if (existingValue != null && existingValue.isDeleted()) {
                        importCount++;
                        if (!dryRun) {
                            dataValueBatchHandler.updateObject(internalValue);
                        }
                    } else {
                        boolean added = false;
                        if (!dryRun) {
                            added = dataValueBatchHandler.addObject(internalValue);
                        }
                        if (dryRun || added) {
                            importCount++;
                        }
                    }
                }
            }
        }
    }
    dataValueBatchHandler.flush();
    auditBatchHandler.flush();
    int ignores = totalCount - importCount - updateCount - deleteCount;
    summary.setImportCount(new ImportCount(importCount, updateCount, ignores, deleteCount));
    summary.setStatus(summary.getConflicts().isEmpty() ? ImportStatus.SUCCESS : ImportStatus.WARNING);
    summary.setDescription("Import process completed successfully");
    clock.logTime("Data value import done, total: " + totalCount + ", import: " + importCount + ", update: " + updateCount + ", delete: " + deleteCount);
    notifier.notify(id, notificationLevel, "Import done", true).addTaskSummary(id, notificationLevel, summary);
    dataValueSet.close();
    return summary;
}

Example 4 with IdentifiableObjectCallable

use of org.hisp.dhis.system.callable.IdentifiableObjectCallable in project dhis2-core by dhis2.

the class DefaultDataValueSetService method createDataValueSetImportContext.

private ImportContext createDataValueSetImportContext(ImportOptions options, DataValueSet data) {
    options = ObjectUtils.firstNonNull(options, ImportOptions.getDefaultImportOptions());
    final User currentUser = currentUserService.getCurrentUser();
    boolean auditEnabled = config.isEnabled(CHANGELOG_AGGREGATE);
    boolean hasSkipAuditAuth = currentUser != null && currentUser.isAuthorized(Authorities.F_SKIP_DATA_IMPORT_AUDIT);
    boolean skipAudit = (options.isSkipAudit() && hasSkipAuditAuth) || !auditEnabled;
    SystemSettingManager settings = systemSettingManager;
    IdScheme dataElementIdScheme = createIdScheme(data.getDataElementIdSchemeProperty(), options, IdSchemes::getDataElementIdScheme);
    IdScheme orgUnitIdScheme = createIdScheme(data.getOrgUnitIdSchemeProperty(), options, IdSchemes::getOrgUnitIdScheme);
    IdScheme categoryOptComboIdScheme = createIdScheme(data.getCategoryOptionComboIdSchemeProperty(), options, IdSchemes::getCategoryOptionComboIdScheme);
    IdScheme dataSetIdScheme = createIdScheme(data.getDataSetIdSchemeProperty(), options, IdSchemes::getDataSetIdScheme);
    return ImportContext.builder().importOptions(options).summary(new ImportSummary().setImportOptions(options)).isIso8601(calendarService.getSystemCalendar().isIso8601()).skipLockExceptionCheck(!lockExceptionStore.anyExists()).i18n(i18nManager.getI18n()).currentUser(currentUser).currentOrgUnits(currentUserService.getCurrentUserOrganisationUnits()).hasSkipAuditAuth(hasSkipAuditAuth).skipAudit(skipAudit).idScheme(createIdScheme(data.getIdSchemeProperty(), options, IdSchemes::getIdScheme)).dataElementIdScheme(dataElementIdScheme).orgUnitIdScheme(orgUnitIdScheme).categoryOptComboIdScheme(categoryOptComboIdScheme).dataSetIdScheme(dataSetIdScheme).strategy(data.getStrategy() != null ? ImportStrategy.valueOf(data.getStrategy()) : options.getImportStrategy()).dryRun(data.getDryRun() != null ? data.getDryRun() : options.isDryRun()).skipExistingCheck(options.isSkipExistingCheck()).strictPeriods(options.isStrictPeriods() || settings.getBoolSetting(SettingKey.DATA_IMPORT_STRICT_PERIODS)).strictDataElements(options.isStrictDataElements() || settings.getBoolSetting(SettingKey.DATA_IMPORT_STRICT_DATA_ELEMENTS)).strictCategoryOptionCombos(options.isStrictCategoryOptionCombos() || settings.getBoolSetting(SettingKey.DATA_IMPORT_STRICT_CATEGORY_OPTION_COMBOS)).strictAttrOptionCombos(options.isStrictAttributeOptionCombos() || settings.getBoolSetting(SettingKey.DATA_IMPORT_STRICT_ATTRIBUTE_OPTION_COMBOS)).strictOrgUnits(options.isStrictOrganisationUnits() || settings.getBoolSetting(SettingKey.DATA_IMPORT_STRICT_ORGANISATION_UNITS)).requireCategoryOptionCombo(options.isRequireCategoryOptionCombo() || settings.getBoolSetting(SettingKey.DATA_IMPORT_REQUIRE_CATEGORY_OPTION_COMBO)).requireAttrOptionCombo(options.isRequireAttributeOptionCombo() || settings.getBoolSetting(SettingKey.DATA_IMPORT_REQUIRE_ATTRIBUTE_OPTION_COMBO)).forceDataInput(inputUtils.canForceDataInput(currentUser, options.isForce())).dataElementCallable(new IdentifiableObjectCallable<>(identifiableObjectManager, DataElement.class, dataElementIdScheme, null)).orgUnitCallable(new IdentifiableObjectCallable<>(identifiableObjectManager, OrganisationUnit.class, orgUnitIdScheme, trimToNull(data.getOrgUnit()))).categoryOptionComboCallable(new CategoryOptionComboAclCallable(categoryService, categoryOptComboIdScheme, null)).attributeOptionComboCallable(new CategoryOptionComboAclCallable(categoryService, categoryOptComboIdScheme, null)).periodCallable(new PeriodCallable(periodService, null, trimToNull(data.getPeriod()))).dataValueBatchHandler(batchHandlerFactory.createBatchHandler(DataValueBatchHandler.class).init()).auditBatchHandler(skipAudit ? null : batchHandlerFactory.createBatchHandler(DataValueAuditBatchHandler.class).init()).singularNameForType(klass -> schemaService.getDynamicSchema(klass).getSingular()).build();
}