Examples with ModelInfo org.hl7.elm_modelinfo.r1.ModelInfo used on opensource projects

Example 1 with ModelInfo

use of org.hl7.elm_modelinfo.r1.ModelInfo in project quality-measure-and-cohort-service by Alvearie.

the class CohortCLITest method testCQLTranslationCustomIGWithTargetUrl.

@Test
public void testCQLTranslationCustomIGWithTargetUrl() throws Exception {
    FhirServerConfig fhirConfig = getFhirServerConfig();
    mockFhirResourceRetrieval("/metadata?_format=json", getCapabilityStatement());
    Patient patient = getPatient("123", Enumerations.AdministrativeGender.FEMALE, "1978-05-06");
    patient.addExtension(new Extension("http://fakeIg.com/fake-extension", new StringType("fakeValue")));
    mockFhirResourceRetrieval(patient);
    Library root = getLibrary("test", DEFAULT_RESOURCE_VERSION, "cql/ig-test/Test-1.0.0.cql");
    Library helpers = getLibrary("FHIRHelpers", "4.0.0", "cql/fhir-helpers/FHIRHelpers.cql", "text/cql", "cql/fhir-helpers/FHIRHelpers.xml", "application/elm+json");
    RelatedArtifact related = new RelatedArtifact();
    related.setType(RelatedArtifactType.DEPENDSON);
    related.setResource("/Library/" + helpers.getId());
    root.addRelatedArtifact(related);
    mockFhirResourceRetrieval(root);
    mockFhirSingletonBundleRetrieval(helpers);
    File tmpFile = new File("target/fhir-stub.json");
    ObjectMapper om = new ObjectMapper();
    try (Writer w = new FileWriter(tmpFile)) {
        w.write(om.writeValueAsString(fhirConfig));
    }
    try {
        PrintStream originalOut = System.out;
        ByteArrayOutputStream baos = new ByteArrayOutputStream();
        try (PrintStream captureOut = new PrintStream(baos)) {
            System.setOut(captureOut);
            CohortCLI.main(new String[] { "-d", tmpFile.getAbsolutePath(), "-f", root.getId(), "-l", root.getName(), "-v", root.getVersion(), "-c", patient.getId(), "-s", "CQL", "-i", "src/test/resources/modelinfo/ig-with-target-modelinfo-0.0.1.xml" });
        } finally {
            System.setOut(originalOut);
        }
        String output = new String(baos.toByteArray());
        System.out.println(output);
        verify(1, getRequestedFor(urlEqualTo("/Patient/" + patient.getId() + "?_format=json")));
        verify(1, getRequestedFor(urlEqualTo("/Library/" + root.getId() + "?_format=json")));
        verify(1, getRequestedFor(urlEqualTo("/Library?url=%2FLibrary%2F" + helpers.getId() + "&_format=json")));
    } finally {
        tmpFile.delete();
    }
}

Example 2 with ModelInfo

use of org.hl7.elm_modelinfo.r1.ModelInfo in project quality-measure-and-cohort-service by Alvearie.

the class SparkCqlEvaluator method createDataTypeAliases.

private Map<String, String> createDataTypeAliases(List<ContextDefinition> filteredContexts, CqlToElmTranslator translator) {
    Set<String> dataTypes = filteredContexts.stream().map(ContextDefinition::getPrimaryDataType).collect(Collectors.toSet());
    Collection<ModelInfo> modelInfos = translator.getRegisteredModelInfos().values();
    Map<String, String> dataTypeAliases = new HashMap<>();
    for (ModelInfo modelInfo : modelInfos) {
        modelInfo.getTypeInfo().stream().filter(ClassInfo.class::isInstance).map(ClassInfo.class::cast).filter(classInfo -> dataTypes.contains(classInfo.getName())).forEach(info -> {
            String dataType = info.getName();
            QName baseType = ModelUtils.getBaseTypeName(modelInfo, info);
            if (baseType != null) {
                // for inheritance types
                dataTypeAliases.put(dataType, baseType.getLocalPart());
            }
            Collection<String> choiceTypes = ModelUtils.getChoiceTypeNames(info);
            // for choice types
            choiceTypes.forEach(choiceType -> dataTypeAliases.put(dataType, choiceType));
        });
    }
    return dataTypeAliases;
}

Example 3 with ModelInfo

use of org.hl7.elm_modelinfo.r1.ModelInfo in project quality-measure-and-cohort-service by Alvearie.

the class CustomModelInfoProvider method addModel.

protected void addModel(ModelInfo modelInfo) {
    VersionedIdentifier modelId = new VersionedIdentifier().withId(modelInfo.getName()).withVersion(modelInfo.getVersion());
    models.put(modelId, modelInfo);
}

Example 4 with ModelInfo

use of org.hl7.elm_modelinfo.r1.ModelInfo in project quality-measure-and-cohort-service by Alvearie.

the class ModelUtilsTest method testGetBaseTypeNameIncludedNamespacePrefixMissing.

@Test
public void testGetBaseTypeNameIncludedNamespacePrefixMissing() {
    ModelSpecifier otherModel = new ModelSpecifier().withName("Other").withVersion("1.2.3").withUrl("urn:oid:Other");
    ModelInfo modelInfo = new ModelInfo();
    modelInfo.setName("Dummy");
    modelInfo.setVersion("5.4.3");
    modelInfo.setUrl("urn:oid:Dummy");
    modelInfo.getRequiredModelInfo().add(otherModel);
    ClassInfo typeInfo = new ClassInfo();
    typeInfo.setName("MyType");
    typeInfo.setBaseType("Missing.BaseType");
    IllegalArgumentException iex = assertThrows(IllegalArgumentException.class, () -> ModelUtils.getBaseTypeName(modelInfo, typeInfo));
    assertTrue(iex.getMessage(), iex.getMessage().contains("Missing"));
    assertTrue(iex.getMessage(), iex.getMessage().contains(modelInfo.getName()));
    assertTrue(iex.getMessage(), iex.getMessage().contains(modelInfo.getVersion()));
}

Example 5 with ModelInfo

use of org.hl7.elm_modelinfo.r1.ModelInfo in project quality-measure-and-cohort-service by Alvearie.

the class ModelUtilsTest method testGetBaseTypeNameNoNamespacePrefix.

@Test
public void testGetBaseTypeNameNoNamespacePrefix() {
    ModelInfo modelInfo = new ModelInfo();
    modelInfo.setName("Dummy");
    modelInfo.setUrl("urn:oid:Dummy");
    ClassInfo typeInfo = new ClassInfo();
    typeInfo.setName("MyType");
    typeInfo.setBaseType("BaseType");
    QName qname = ModelUtils.getBaseTypeName(modelInfo, typeInfo);
    assertEquals(new QName(modelInfo.getUrl(), "BaseType"), qname);
}