use of org.hl7.fhir.dstu2.model.Period in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeDocumentReferenceDocumentReferenceContextComponent.
protected void composeDocumentReferenceDocumentReferenceContextComponent(Complex parent, String parentType, String name, DocumentReference.DocumentReferenceContextComponent element, int index) {
if (element == null)
return;
Complex t;
if (Utilities.noString(parentType))
t = parent;
else {
t = parent.predicate("fhir:" + parentType + '.' + name);
}
composeBackboneElement(t, "context", name, element, index);
if (element.hasEncounter())
composeReference(t, "DocumentReference", "encounter", element.getEncounter(), -1);
for (int i = 0; i < element.getEvent().size(); i++) composeCodeableConcept(t, "DocumentReference", "event", element.getEvent().get(i), i);
if (element.hasPeriod())
composePeriod(t, "DocumentReference", "period", element.getPeriod(), -1);
if (element.hasFacilityType())
composeCodeableConcept(t, "DocumentReference", "facilityType", element.getFacilityType(), -1);
if (element.hasPracticeSetting())
composeCodeableConcept(t, "DocumentReference", "practiceSetting", element.getPracticeSetting(), -1);
if (element.hasSourcePatientInfo())
composeReference(t, "DocumentReference", "sourcePatientInfo", element.getSourcePatientInfo(), -1);
for (int i = 0; i < element.getRelated().size(); i++) composeDocumentReferenceDocumentReferenceContextRelatedComponent(t, "DocumentReference", "related", element.getRelated().get(i), i);
}
use of org.hl7.fhir.dstu2.model.Period in project org.hl7.fhir.core by hapifhir.
the class Convert method makeTimingFromBoundedPIVL.
private Timing makeTimingFromBoundedPIVL(Element ivl, Element pivl) throws Exception {
Timing t = new Timing();
t.setRepeat(new TimingRepeatComponent());
Element p = cda.getChild(pivl, "period");
t.getRepeat().setBounds(makePeriodFromIVL(ivl));
t.getRepeat().setPeriod(new BigDecimal(p.getAttribute("value")));
t.getRepeat().setPeriodUnit(convertTimeUnit(p.getAttribute("unit")));
return t;
}
use of org.hl7.fhir.dstu2.model.Period in project org.hl7.fhir.core by hapifhir.
the class JsonParser method composeType.
protected void composeType(String prefix, Type type) throws IOException {
if (type == null)
;
else if (type instanceof Age)
composeAge(prefix + "Age", (Age) type);
else if (type instanceof Count)
composeCount(prefix + "Count", (Count) type);
else if (type instanceof Money)
composeMoney(prefix + "Money", (Money) type);
else if (type instanceof Distance)
composeDistance(prefix + "Distance", (Distance) type);
else if (type instanceof Duration)
composeDuration(prefix + "Duration", (Duration) type);
else if (type instanceof SimpleQuantity)
composeSimpleQuantity(prefix + "SimpleQuantity", (SimpleQuantity) type);
else if (type instanceof Period)
composePeriod(prefix + "Period", (Period) type);
else if (type instanceof Coding)
composeCoding(prefix + "Coding", (Coding) type);
else if (type instanceof Range)
composeRange(prefix + "Range", (Range) type);
else if (type instanceof Quantity)
composeQuantity(prefix + "Quantity", (Quantity) type);
else if (type instanceof Attachment)
composeAttachment(prefix + "Attachment", (Attachment) type);
else if (type instanceof Ratio)
composeRatio(prefix + "Ratio", (Ratio) type);
else if (type instanceof Annotation)
composeAnnotation(prefix + "Annotation", (Annotation) type);
else if (type instanceof SampledData)
composeSampledData(prefix + "SampledData", (SampledData) type);
else if (type instanceof Reference)
composeReference(prefix + "Reference", (Reference) type);
else if (type instanceof CodeableConcept)
composeCodeableConcept(prefix + "CodeableConcept", (CodeableConcept) type);
else if (type instanceof Identifier)
composeIdentifier(prefix + "Identifier", (Identifier) type);
else if (type instanceof Signature)
composeSignature(prefix + "Signature", (Signature) type);
else if (type instanceof TriggerDefinition)
composeTriggerDefinition(prefix + "TriggerDefinition", (TriggerDefinition) type);
else if (type instanceof ElementDefinition)
composeElementDefinition(prefix + "ElementDefinition", (ElementDefinition) type);
else if (type instanceof Timing)
composeTiming(prefix + "Timing", (Timing) type);
else if (type instanceof ModuleMetadata)
composeModuleMetadata(prefix + "ModuleMetadata", (ModuleMetadata) type);
else if (type instanceof ActionDefinition)
composeActionDefinition(prefix + "ActionDefinition", (ActionDefinition) type);
else if (type instanceof Address)
composeAddress(prefix + "Address", (Address) type);
else if (type instanceof HumanName)
composeHumanName(prefix + "HumanName", (HumanName) type);
else if (type instanceof DataRequirement)
composeDataRequirement(prefix + "DataRequirement", (DataRequirement) type);
else if (type instanceof Meta)
composeMeta(prefix + "Meta", (Meta) type);
else if (type instanceof ParameterDefinition)
composeParameterDefinition(prefix + "ParameterDefinition", (ParameterDefinition) type);
else if (type instanceof ContactPoint)
composeContactPoint(prefix + "ContactPoint", (ContactPoint) type);
else if (type instanceof MarkdownType) {
composeMarkdownCore(prefix + "Markdown", (MarkdownType) type, false);
composeMarkdownExtras(prefix + "Markdown", (MarkdownType) type, false);
} else if (type instanceof UnsignedIntType) {
composeUnsignedIntCore(prefix + "UnsignedInt", (UnsignedIntType) type, false);
composeUnsignedIntExtras(prefix + "UnsignedInt", (UnsignedIntType) type, false);
} else if (type instanceof CodeType) {
composeCodeCore(prefix + "Code", (CodeType) type, false);
composeCodeExtras(prefix + "Code", (CodeType) type, false);
} else if (type instanceof IdType) {
composeIdCore(prefix + "Id", (IdType) type, false);
composeIdExtras(prefix + "Id", (IdType) type, false);
} else if (type instanceof OidType) {
composeOidCore(prefix + "Oid", (OidType) type, false);
composeOidExtras(prefix + "Oid", (OidType) type, false);
} else if (type instanceof PositiveIntType) {
composePositiveIntCore(prefix + "PositiveInt", (PositiveIntType) type, false);
composePositiveIntExtras(prefix + "PositiveInt", (PositiveIntType) type, false);
} else if (type instanceof UuidType) {
composeUuidCore(prefix + "Uuid", (UuidType) type, false);
composeUuidExtras(prefix + "Uuid", (UuidType) type, false);
} else if (type instanceof IntegerType) {
composeIntegerCore(prefix + "Integer", (IntegerType) type, false);
composeIntegerExtras(prefix + "Integer", (IntegerType) type, false);
} else if (type instanceof DateTimeType) {
composeDateTimeCore(prefix + "DateTime", (DateTimeType) type, false);
composeDateTimeExtras(prefix + "DateTime", (DateTimeType) type, false);
} else if (type instanceof DateType) {
composeDateCore(prefix + "Date", (DateType) type, false);
composeDateExtras(prefix + "Date", (DateType) type, false);
} else if (type instanceof DecimalType) {
composeDecimalCore(prefix + "Decimal", (DecimalType) type, false);
composeDecimalExtras(prefix + "Decimal", (DecimalType) type, false);
} else if (type instanceof UriType) {
composeUriCore(prefix + "Uri", (UriType) type, false);
composeUriExtras(prefix + "Uri", (UriType) type, false);
} else if (type instanceof Base64BinaryType) {
composeBase64BinaryCore(prefix + "Base64Binary", (Base64BinaryType) type, false);
composeBase64BinaryExtras(prefix + "Base64Binary", (Base64BinaryType) type, false);
} else if (type instanceof TimeType) {
composeTimeCore(prefix + "Time", (TimeType) type, false);
composeTimeExtras(prefix + "Time", (TimeType) type, false);
} else if (type instanceof StringType) {
composeStringCore(prefix + "String", (StringType) type, false);
composeStringExtras(prefix + "String", (StringType) type, false);
} else if (type instanceof BooleanType) {
composeBooleanCore(prefix + "Boolean", (BooleanType) type, false);
composeBooleanExtras(prefix + "Boolean", (BooleanType) type, false);
} else if (type instanceof InstantType) {
composeInstantCore(prefix + "Instant", (InstantType) type, false);
composeInstantExtras(prefix + "Instant", (InstantType) type, false);
} else
throw new Error("Unhandled type");
}
use of org.hl7.fhir.dstu2.model.Period in project org.hl7.fhir.core by hapifhir.
the class ProfileUtilitiesTests method testSlicingExtensionComplex.
/**
* we're going to slice Patient.extension and refer to extension by profile. one of the extensions is complex, and we're going to walk into
* it and make it must support
*
* implicit: whether to rely on implicit extension slicing
*/
private void testSlicingExtensionComplex(boolean implicit) throws EOperationOutcome, Exception {
StructureDefinition focus = new StructureDefinition();
StructureDefinition base = context.fetchResource(StructureDefinition.class, "http://hl7.org/fhir/StructureDefinition/Patient").copy();
focus.setUrl(Utilities.makeUuidUrn());
focus.setBase(base.getUrl());
// set the slice up
ElementDefinition id;
if (!implicit) {
id = focus.getDifferential().addElement();
id.setPath("Patient.extension");
id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator("url");
}
// first slice - a simple one to get us going:
id = focus.getDifferential().addElement();
id.setPath("Patient.extension");
id.setName("simple");
id.addType().setCode("Extension").addProfile("http://hl7.org/fhir/StructureDefinition/patient-birthTime");
// second slice - the complex one
// we walk into this and fix properties on the inner extensions
id = focus.getDifferential().addElement();
id.setPath("Patient.extension");
id.setName("complex");
id.addType().setCode("Extension").addProfile("http://hl7.org/fhir/StructureDefinition/patient-nationality");
if (!implicit) {
id = focus.getDifferential().addElement();
id.setPath("Patient.extension.extension");
id.getSlicing().setOrdered(false).setRules(SlicingRules.OPEN).addDiscriminator("url");
}
id = focus.getDifferential().addElement();
id.setPath("Patient.extension.extension");
id.setName("code");
id.setMustSupport(true);
id.addType().setCode("Extension").addProfile("http://hl7.org/fhir/StructureDefinition/patient-nationality#code");
id = focus.getDifferential().addElement();
id.setPath("Patient.extension.extension");
id.setName("period");
id.addType().setCode("Extension").addProfile("http://hl7.org/fhir/StructureDefinition/patient-nationality#period");
// prohibit this one....
id.setMax("0");
List<ValidationMessage> messages = new ArrayList<ValidationMessage>();
new ProfileUtilities(context, messages, null).generateSnapshot(base, focus, focus.getUrl(), "Simple Test");
// ok, there's going to 1 (simple) + complex: 1 + id + extnesion.slice + extension.code + (4 inside from that) + extension.period + (4 inside from that) + value + url = 16
boolean ok = base.getSnapshot().getElement().size() == focus.getSnapshot().getElement().size() - 16;
// custom checks
ok = ok && rule(focus.getSnapshot().getElement().get(7).getPath().equals("Patient.extension"), "element 7 (base) path");
ok = ok && rule(focus.getSnapshot().getElement().get(7).hasSlicing(), "element 7 slicing");
ok = ok && rule(focus.getSnapshot().getElement().get(8).getPath().equals("Patient.extension"), "element 8 (1st slice) path");
ok = ok && rule(focus.getSnapshot().getElement().get(8).getName().equals("simple"), "element 8 (1st slice) name");
ok = ok && rule(focus.getSnapshot().getElement().get(8).getType().get(0).getProfile().get(0).getValue().equals("http://hl7.org/fhir/StructureDefinition/patient-birthTime"), "element 9 (2nd slice) profile name");
ok = ok && rule(focus.getSnapshot().getElement().get(9).getPath().equals("Patient.extension"), "element 9 (2nd slice) path");
ok = ok && rule(focus.getSnapshot().getElement().get(9).getName().equals("complex"), "element 8 (1st slice) name");
ok = ok && rule(focus.getSnapshot().getElement().get(9).getType().get(0).getProfile().get(0).getValue().equals("http://hl7.org/fhir/StructureDefinition/patient-nationality"), "element 9 (2nd slice) profile name");
ok = ok && rule(focus.getSnapshot().getElement().get(10).getPath().equals("Patient.extension.id"), "element 10 (2nd slice).id path");
ok = ok && rule(focus.getSnapshot().getElement().get(11).getPath().equals("Patient.extension.extension"), "element 11 (2nd slice).extension path");
ok = ok && rule(focus.getSnapshot().getElement().get(12).getPath().equals("Patient.extension.extension"), "element 12 (2nd slice).extension path");
ok = ok && rule(focus.getSnapshot().getElement().get(12).getMustSupport(), "element 12 (2nd slice).extension must support");
ok = ok && rule(focus.getSnapshot().getElement().get(13).getPath().equals("Patient.extension.extension.id"), "element 13 (2nd slice).extension.id path");
ok = ok && rule(focus.getSnapshot().getElement().get(14).getPath().equals("Patient.extension.extension.extension"), "element 14 (2nd slice).extension.extension path");
ok = ok && rule(focus.getSnapshot().getElement().get(15).getPath().equals("Patient.extension.extension.url"), "element 15 (2nd slice).extension.url path");
ok = ok && rule(focus.getSnapshot().getElement().get(16).getPath().equals("Patient.extension.extension.valueCodeableConcept"), "element 16 (2nd slice).extension.valueCodeableConcept path");
ok = ok && rule(focus.getSnapshot().getElement().get(17).getPath().equals("Patient.extension.extension"), "element 17 (2nd slice).extension path");
ok = ok && rule(focus.getSnapshot().getElement().get(17).getMax().equals("0"), "element 17 (2nd slice).extension cardinality");
ok = ok && rule(focus.getSnapshot().getElement().get(18).getPath().equals("Patient.extension.extension.id"), "element 18 (2nd slice).extension.id path");
ok = ok && rule(focus.getSnapshot().getElement().get(19).getPath().equals("Patient.extension.extension.extension"), "element 19 (2nd slice).extension.extension path");
ok = ok && rule(focus.getSnapshot().getElement().get(20).getPath().equals("Patient.extension.extension.url"), "element 20 (2nd slice).extension.url path");
ok = ok && rule(focus.getSnapshot().getElement().get(21).getPath().equals("Patient.extension.extension.valuePeriod"), "element 21 (2nd slice).extension.valuePeriod path");
ok = ok && rule(focus.getSnapshot().getElement().get(22).getPath().equals("Patient.extension.url"), "element 22 (2nd slice).url path");
ok = ok && rule(focus.getSnapshot().getElement().get(23).getPath().equals("Patient.extension.value[x]"), "element 23 (2nd slice).url path");
for (int i = 0; i < base.getSnapshot().getElement().size(); i++) {
if (ok) {
ElementDefinition b = base.getSnapshot().getElement().get(i);
ElementDefinition f = focus.getSnapshot().getElement().get(i <= 7 ? i : i + 16);
if (!f.hasBase() || !b.getPath().equals(f.getBase().getPath()))
ok = false;
else {
f.setBase(null);
if (f.getPath().equals("Patient.extension")) {
ok = f.hasSlicing();
if (ok)
f.setSlicing(null);
}
if (// no compare that because the definitions get overwritten
!f.getPath().equals("Patient.extension"))
ok = Base.compareDeep(b, f, true);
}
}
}
if (!ok) {
compareXml(base, focus);
throw new FHIRException("Snap shot generation slicing extensions complex (" + (implicit ? "implicit" : "not implicit") + ") failed");
} else
System.out.println("Snap shot generation slicing extensions complex (" + (implicit ? "implicit" : "not implicit") + ") passed");
}
use of org.hl7.fhir.dstu2.model.Period in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeResearchSubject.
protected void composeResearchSubject(Complex parent, String parentType, String name, ResearchSubject element, int index) {
if (element == null)
return;
Complex t;
if (Utilities.noString(parentType))
t = parent;
else {
t = parent.predicate("fhir:" + parentType + '.' + name);
}
composeDomainResource(t, "ResearchSubject", name, element, index);
if (element.hasIdentifier())
composeIdentifier(t, "ResearchSubject", "identifier", element.getIdentifier(), -1);
if (element.hasStatusElement())
composeEnum(t, "ResearchSubject", "status", element.getStatusElement(), -1);
if (element.hasPeriod())
composePeriod(t, "ResearchSubject", "period", element.getPeriod(), -1);
if (element.hasStudy())
composeReference(t, "ResearchSubject", "study", element.getStudy(), -1);
if (element.hasIndividual())
composeReference(t, "ResearchSubject", "individual", element.getIndividual(), -1);
if (element.hasAssignedArmElement())
composeString(t, "ResearchSubject", "assignedArm", element.getAssignedArmElement(), -1);
if (element.hasActualArmElement())
composeString(t, "ResearchSubject", "actualArm", element.getActualArmElement(), -1);
if (element.hasConsent())
composeReference(t, "ResearchSubject", "consent", element.getConsent(), -1);
}
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