Examples with FHIRException org.hl7.fhir.exceptions.FHIRException used on opensource projects

Example 1 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method patientDetailsToRegisterPatientResourceConverter.

// a cut-down Patient
private Patient patientDetailsToRegisterPatientResourceConverter(PatientDetails patientDetails) throws FHIRException {
    Patient patient = patientDetailsToMinimalPatient(patientDetails);
    HumanName name = getPatientNameFromPatientDetails(patientDetails);
    patient.addName(name);
    patient = setStaticPatientData(patient);
    return patient;
}

Example 2 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project bunsen by cerner.

the class FhirEncodersTest method annotation.

@Test
public void annotation() throws FHIRException {
    Annotation original = medRequest.getNoteFirstRep();
    Annotation decoded = decodedMedRequest.getNoteFirstRep();
    Assert.assertEquals(original.getText(), medDataset.select(functions.expr("note[0].text")).head().get(0));
    Assert.assertEquals(original.getText(), decoded.getText());
    Assert.assertEquals(original.getAuthorReference().getReference(), decoded.getAuthorReference().getReference());
}

Example 3 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project bunsen by cerner.

the class ConceptMapsTest method testAppendMappings.

@Test
public void testAppendMappings() throws FHIRException {
    ConceptMaps original = ConceptMaps.getEmpty(spark).withConceptMaps(conceptMap("urn:cerner:map:testmap", "1"), conceptMap("urn:cerner:map:othermap", "1"));
    ConceptMaps maps = original.withConceptMaps(conceptMap("urn:cerner:map:newmap", "1"));
    // The original should be unchanged.
    Assert.assertEquals(2, original.getMappings().count());
    Assert.assertEquals(3, maps.getMappings().count());
    ConceptMap firstMap = maps.getConceptMap("urn:cerner:map:testmap", "1");
    checkMap(firstMap, "urn:cerner:map:testmap", "1");
    ConceptMap secondMap = maps.getConceptMap("urn:cerner:map:othermap", "1");
    checkMap(secondMap, "urn:cerner:map:othermap", "1");
    ConceptMap newMap = maps.getConceptMap("urn:cerner:map:newmap", "1");
    checkMap(newMap, "urn:cerner:map:newmap", "1");
}

Example 4 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project bunsen by cerner.

the class ConceptMapsTest method testCreateSimpleMappings.

@Test
public void testCreateSimpleMappings() throws FHIRException {
    ConceptMaps maps = ConceptMaps.getEmpty(spark).withConceptMaps(conceptMap("urn:cerner:map:testmap", "1"), conceptMap("urn:cerner:map:othermap", "1"));
    Dataset<Mapping> mappings = maps.getMappings();
    Assert.assertEquals(2, mappings.count());
    ConceptMap firstMap = maps.getConceptMap("urn:cerner:map:testmap", "1");
    checkMap(firstMap, "urn:cerner:map:testmap", "1");
    ConceptMap secondMap = maps.getConceptMap("urn:cerner:map:othermap", "1");
    checkMap(secondMap, "urn:cerner:map:othermap", "1");
}

Example 5 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project bunsen by cerner.

the class ConceptMaps method expandMappingsIterator.

private static Iterator<Mapping> expandMappingsIterator(ConceptMap map) {
    List<Mapping> mappings = new ArrayList<>();
    for (ConceptMapGroupComponent group : map.getGroup()) {
        for (SourceElementComponent element : group.getElement()) {
            for (TargetElementComponent target : element.getTarget()) {
                Mapping mapping = new Mapping();
                mapping.setConceptMapUri(map.getUrl());
                mapping.setConceptMapVersion(map.getVersion());
                try {
                    String sourceValue = map.getSource() instanceof UriType ? map.getSourceUriType().getValue() : map.getSourceReference().getReference();
                    mapping.setSourceValueSet(sourceValue);
                    String targetValue = map.getTarget() instanceof UriType ? map.getTargetUriType().getValue() : map.getTargetReference().getReference();
                    mapping.setTargetValueSet(targetValue);
                } catch (FHIRException fhirException) {
                    // an exception.
                    throw new RuntimeException(fhirException);
                }
                mapping.setSourceSystem(group.getSource());
                mapping.setSourceValue(element.getCode());
                mapping.setTargetSystem(group.getTarget());
                mapping.setTargetValue(target.getCode());
                if (target.getEquivalence() != null) {
                    mapping.setEquivalence(target.getEquivalence().toCode());
                }
                mappings.add(mapping);
            }
        }
    }
    return mappings.iterator();
}