Examples with FHIRException org.hl7.fhir.exceptions.FHIRException used on opensource projects

Example 6 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project gpconnect-demonstrator by nhsconnect.

the class AppointmentResourceProvider method appointmentDetailToAppointmentResourceConverter.

/**
 * AppointmentDetail to fhir resource Appointment
 *
 * @param appointmentDetail
 * @return Appointment Resource
 */
private Appointment appointmentDetailToAppointmentResourceConverter(AppointmentDetail appointmentDetail) {
    Appointment appointment = new Appointment();
    String appointmentId = String.valueOf(appointmentDetail.getId());
    String versionId = String.valueOf(appointmentDetail.getLastUpdated().getTime());
    String resourceType = appointment.getResourceType().toString();
    IdType id = new IdType(resourceType, appointmentId, versionId);
    appointment.setId(id);
    appointment.getMeta().setVersionId(versionId);
    appointment.getMeta().setLastUpdated(appointmentDetail.getLastUpdated());
    appointment.getMeta().addProfile(SystemURL.SD_GPC_APPOINTMENT);
    Extension extension = new Extension(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON, new StringType(appointmentDetail.getCancellationReason()));
    appointment.addExtension(extension);
    // #157 derive delivery channel from slot
    List<Long> sids = appointmentDetail.getSlotIds();
    ScheduleDetail scheduleDetail = null;
    if (sids.size() > 0) {
        // get the first slot but it should not matter because for multi slot appts the deliveryChannel is always the same
        SlotDetail slotDetail = slotSearch.findSlotByID(sids.get(0));
        String deliveryChannel = slotDetail.getDeliveryChannelCode();
        if (deliveryChannel != null && !deliveryChannel.trim().isEmpty()) {
            Extension deliveryChannelExtension = new Extension(SystemURL.SD_EXTENSION_GPC_DELIVERY_CHANNEL, new CodeType(deliveryChannel));
            appointment.addExtension(deliveryChannelExtension);
        }
        scheduleDetail = scheduleSearch.findScheduleByID(slotDetail.getScheduleReference());
    }
    // practitioner role extension here
    // lookup the practitioner
    Long practitionerID = appointmentDetail.getPractitionerId();
    if (practitionerID != null) {
        // #195 we need to get this detail from the schedule not the practitioner table
        if (scheduleDetail != null) {
            Coding roleCoding = new Coding(SystemURL.VS_GPC_PRACTITIONER_ROLE, scheduleDetail.getPractitionerRoleCode(), scheduleDetail.getPractitionerRoleDisplay());
            Extension practitionerRoleExtension = new Extension(SystemURL.SD_EXTENSION_GPC_PRACTITIONER_ROLE, new CodeableConcept().addCoding(roleCoding));
            appointment.addExtension(practitionerRoleExtension);
        }
    }
    switch(appointmentDetail.getStatus().toLowerCase(Locale.UK)) {
        case "pending":
            appointment.setStatus(AppointmentStatus.PENDING);
            break;
        case "booked":
            appointment.setStatus(AppointmentStatus.BOOKED);
            break;
        case "arrived":
            appointment.setStatus(AppointmentStatus.ARRIVED);
            break;
        case "fulfilled":
            appointment.setStatus(AppointmentStatus.FULFILLED);
            break;
        case "cancelled":
            appointment.setStatus(AppointmentStatus.CANCELLED);
            break;
        case "noshow":
            appointment.setStatus(AppointmentStatus.NOSHOW);
            break;
        default:
            appointment.setStatus(AppointmentStatus.PENDING);
            break;
    }
    appointment.setStart(appointmentDetail.getStartDateTime());
    appointment.setEnd(appointmentDetail.getEndDateTime());
    // #218 Date time formats
    appointment.getStartElement().setPrecision(TemporalPrecisionEnum.SECOND);
    appointment.getEndElement().setPrecision(TemporalPrecisionEnum.SECOND);
    List<Reference> slotResources = new ArrayList<>();
    for (Long slotId : appointmentDetail.getSlotIds()) {
        slotResources.add(new Reference("Slot/" + slotId));
    }
    appointment.setSlot(slotResources);
    if (appointmentDetail.getPriority() != null) {
        appointment.setPriority(appointmentDetail.getPriority());
    }
    appointment.setComment(appointmentDetail.getComment());
    appointment.setDescription(appointmentDetail.getDescription());
    appointment.addParticipant().setActor(new Reference("Patient/" + appointmentDetail.getPatientId())).setStatus(ParticipationStatus.ACCEPTED);
    appointment.addParticipant().setActor(new Reference("Location/" + appointmentDetail.getLocationId())).setStatus(ParticipationStatus.ACCEPTED);
    if (null != appointmentDetail.getPractitionerId()) {
        appointment.addParticipant().setActor(new Reference("Practitioner/" + appointmentDetail.getPractitionerId())).setStatus(ParticipationStatus.ACCEPTED);
    }
    if (null != appointmentDetail.getCreated()) {
        appointment.setCreated(appointmentDetail.getCreated());
    }
    if (null != appointmentDetail.getBookingOrganization()) {
        // add extension with reference to contained item
        String reference = "#1";
        Reference orgRef = new Reference(reference);
        Extension bookingOrgExt = new Extension(SystemURL.SD_CC_APPOINTMENT_BOOKINGORG, orgRef);
        appointment.addExtension(bookingOrgExt);
        BookingOrgDetail bookingOrgDetail = appointmentDetail.getBookingOrganization();
        Organization bookingOrg = new Organization();
        bookingOrg.setId(reference);
        bookingOrg.getNameElement().setValue(bookingOrgDetail.getName());
        // #198 org phone now persists usetype and system
        ContactPoint orgTelecom = bookingOrg.getTelecomFirstRep();
        orgTelecom.setValue(bookingOrgDetail.getTelephone());
        try {
            orgTelecom.setSystem(ContactPointSystem.fromCode(bookingOrgDetail.getSystem().toLowerCase()));
            if (bookingOrgDetail.getUsetype() != null && !bookingOrgDetail.getUsetype().trim().isEmpty()) {
                orgTelecom.setUse(ContactPointUse.fromCode(bookingOrgDetail.getUsetype().toLowerCase()));
            }
        } catch (FHIRException ex) {
        // Logger.getLogger(AppointmentResourceProvider.class.getName()).log(Level.SEVERE, null, ex);
        }
        bookingOrg.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
        if (null != bookingOrgDetail.getOrgCode()) {
            bookingOrg.getIdentifierFirstRep().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(bookingOrgDetail.getOrgCode());
        }
        // add contained booking organization resource
        appointment.getContained().add(bookingOrg);
    }
    // if bookingOrganization
    appointment.setMinutesDuration(appointmentDetail.getMinutesDuration());
    // 1.2.7 set service category from schedule type description
    appointment.setServiceCategory(new CodeableConcept().setText(scheduleDetail.getTypeDescription()));
    // 1.2.7 set service type from slot type description
    appointment.addServiceType(new CodeableConcept().setText(slotSearch.findSlotByID(sids.get(0)).getTypeDisply()));
    return appointment;
}

Example 7 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method registerPatient.

@Operation(name = REGISTER_PATIENT_OPERATION_NAME)
public Bundle registerPatient(@ResourceParam Parameters params) {
    Patient registeredPatient = null;
    validateParameterNames(params, registerPatientParams);
    Patient unregisteredPatient = params.getParameter().stream().filter(param -> "registerPatient".equalsIgnoreCase(param.getName())).map(ParametersParameterComponent::getResource).map(Patient.class::cast).findFirst().orElse(null);
    String nnn = nhsNumber.fromPatientResource(unregisteredPatient);
    // if its patient 14 spoof not on PDS and return the required error
    if (nnn.equals(patientNotOnSpine)) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) not present on PDS", nnn)), SystemCode.INVALID_PATIENT_DEMOGRAPHICS, IssueType.INVALID);
    } else if (nnn.equals(patientSuperseded)) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) is superseded", nnn)), SystemCode.INVALID_NHS_NUMBER, IssueType.INVALID);
    }
    if (unregisteredPatient != null) {
        validatePatient(unregisteredPatient);
        // check if the patient already exists
        PatientDetails patientDetails = patientSearch.findPatient(nhsNumber.fromPatientResource(unregisteredPatient));
        if (patientDetails == null || IsInactiveTemporaryPatient(patientDetails)) {
            if (patientDetails == null) {
                patientDetails = registerPatientResourceConverterToPatientDetail(unregisteredPatient);
                patientStore.create(patientDetails);
            } else {
                // reactivate inactive non temporary patient
                patientDetails.setRegistrationStatus(ACTIVE_REGISTRATION_STATUS);
                updateAddressAndTelecom(unregisteredPatient, patientDetails);
                patientStore.update(patientDetails);
            }
            try {
                registeredPatient = patientDetailsToRegisterPatientResourceConverter(patientSearch.findPatient(unregisteredPatient.getIdentifierFirstRep().getValue()));
                addPreferredBranchSurgeryExtension(registeredPatient);
            } catch (FHIRException e) {
                // TODO Auto-generated catch block
                e.printStackTrace();
            }
        } else if (patientDetails.isDeceased() || patientDetails.isSensitive()) {
            throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) has invalid demographics", nnn)), SystemCode.INVALID_PATIENT_DEMOGRAPHICS, IssueType.INVALID);
        } else {
            throw OperationOutcomeFactory.buildOperationOutcomeException(new UnclassifiedServerFailureException(409, String.format("Patient (NHS number - %s) already exists", nnn)), SystemCode.DUPLICATE_REJECTED, IssueType.INVALID);
        }
    } else {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Patient record not found"), SystemCode.INVALID_PARAMETER, IssueType.INVALID);
    }
    Bundle bundle = new Bundle().setType(BundleType.SEARCHSET);
    bundle.getMeta().addProfile(SystemURL.SD_GPC_SRCHSET_BUNDLE);
    bundle.addEntry().setResource(registeredPatient);
    return bundle;
}

Example 8 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method StructuredRecordOperation.

@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
    Bundle structuredBundle = new Bundle();
    Boolean getAllergies = false;
    Boolean includeResolved = false;
    Boolean getMedications = false;
    Boolean includePrescriptionIssues = false;
    Period medicationPeriod = null;
    String NHS = getNhsNumber(params);
    PatientDetails patientDetails = patientSearch.findPatient(NHS);
    // see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
    if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
    }
    if (NHS.equals(patientNoconsent)) {
        throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
    }
    operationOutcome = null;
    for (ParametersParameterComponent param : params.getParameter()) {
        if (validateParametersName(param.getName())) {
            if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
                getAllergies = true;
                if (param.getPart().isEmpty()) {
                    // addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
                    throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                }
                boolean includeResolvedParameterPartPresent = false;
                for (ParametersParameterComponent paramPart : param.getPart()) {
                    if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
                        if (paramPart.getValue() instanceof BooleanType) {
                            includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
                            includeResolvedParameterPartPresent = true;
                        } else {
                            throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                        }
                    } else {
                        addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
                    // throw OperationOutcomeFactory.buildOperationOutcomeException(
                    // new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
                    // SystemCode.INVALID_PARAMETER, IssueType.INVALID);
                    }
                }
                if (!includeResolvedParameterPartPresent) {
                    throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
                }
            }
            if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
                getMedications = true;
                boolean isIncludedPrescriptionIssuesExist = false;
                for (ParametersParameterComponent paramPart : param.getPart()) {
                    if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
                        if (paramPart.getValue() instanceof BooleanType) {
                            includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
                            isIncludedPrescriptionIssuesExist = true;
                        }
                    } else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
                        DateType startDateDt = (DateType) paramPart.getValue();
                        medicationPeriod = new Period();
                        medicationPeriod.setStart(startDateDt.getValue());
                        medicationPeriod.setEnd(null);
                        String startDate = startDateDt.asStringValue();
                        if (!validateStartDateParamAndEndDateParam(startDate, null)) {
                        // addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
                        }
                    } else {
                        addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
                    // throw OperationOutcomeFactory.buildOperationOutcomeException(
                    // new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
                    // SystemCode.INVALID_PARAMETER, IssueType.INVALID);
                    }
                }
                if (!isIncludedPrescriptionIssuesExist) {
                    // # 1.2.6 now defaults to true if not provided
                    includePrescriptionIssues = true;
                }
            }
        } else {
            // invalid parameter
            addWarningIssue(param, IssueType.NOTSUPPORTED);
        }
    }
    // for parameter
    // Add Patient
    Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
    if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
        structuredBundle.addEntry().setResource(patient);
    }
    // Organization from patient
    Set<String> orgIds = new HashSet<>();
    orgIds.add(patientDetails.getManagingOrganization());
    // Practitioner from patient
    Set<String> practitionerIds = new HashSet<>();
    List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
    practitionerReferenceList.forEach(practitionerReference -> {
        String[] pracRef = practitionerReference.getReference().split("/");
        if (pracRef.length > 1) {
            practitionerIds.add(pracRef[1]);
        }
    });
    if (getAllergies) {
        structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
    }
    if (getMedications) {
        structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
    }
    // Add all practitioners and practitioner roles
    for (String practitionerId : practitionerIds) {
        Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
        structuredBundle.addEntry().setResource(pracResource);
        List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
        for (PractitionerRole role : practitionerRoleList) {
            String[] split = role.getOrganization().getReference().split("/");
            orgIds.add(split[1]);
            structuredBundle.addEntry().setResource(role);
        }
    }
    // Add all organizations
    for (String orgId : orgIds) {
        OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
        Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
        structuredBundle.addEntry().setResource(organization);
    }
    structuredBundle.setType(BundleType.COLLECTION);
    structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
    if (operationOutcome != null) {
        structuredBundle.addEntry().setResource(operationOutcome);
    } else {
        removeDuplicateResources(structuredBundle);
    }
    return structuredBundle;
}

Example 9 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project gpconnect-demonstrator by nhsconnect.

the class MedicationRequestResourceProvider method getMedicationRequestFromDetail.

private MedicationRequest getMedicationRequestFromDetail(MedicationRequestDetail requestDetail) {
    MedicationRequest medicationRequest = new MedicationRequest();
    medicationRequest.setId(requestDetail.getId().toString());
    List<Identifier> identifiers = new ArrayList<>();
    Identifier identifier = new Identifier().setSystem("https://fhir.nhs.uk/Id/cross-care-setting-identifier").setValue(requestDetail.getGuid());
    identifiers.add(identifier);
    medicationRequest.setIdentifier(identifiers);
    medicationRequest.setMeta(new Meta().addProfile(SystemURL.SD_GPC_MEDICATION_REQUEST));
    setBasedOnReferences(medicationRequest, requestDetail);
    if (requestDetail.getPrescriptionTypeCode().contains("repeat")) {
        medicationRequest.setGroupIdentifier(new Identifier().setValue(requestDetail.getGroupIdentifier()));
    }
    try {
        medicationRequest.setStatus(MedicationRequestStatus.fromCode(requestDetail.getStatusCode()));
    } catch (FHIRException e) {
        throw new UnprocessableEntityException(e.getMessage());
    }
    try {
        medicationRequest.setIntent(MedicationRequestIntent.fromCode(requestDetail.getIntentCode()));
    } catch (FHIRException e) {
        throw new UnprocessableEntityException(e.getMessage());
    }
    if (requestDetail.getMedicationId() != null) {
        medicationRequest.setMedication(new Reference(new IdType("Medication", requestDetail.getMedicationId())));
    }
    if (requestDetail.getPatientId() != null) {
        medicationRequest.setSubject(new Reference(new IdType("Patient", requestDetail.getPatientId())));
    }
    if (requestDetail.getAuthorisingPractitionerId() != null) {
        medicationRequest.setRecorder(new Reference(new IdType("Practitioner", requestDetail.getAuthorisingPractitionerId())));
    }
    if (requestDetail.getPriorMedicationRequestId() != null) {
        medicationRequest.setPriorPrescription(new Reference(new IdType("MedicationRequest", requestDetail.getPriorMedicationRequestId())));
    }
    medicationRequest.setAuthoredOn(requestDetail.getAuthoredOn());
    medicationRequest.setDispenseRequest(getDispenseRequestComponent(requestDetail));
    // medicationRequest.setRequester(getRequesterComponent(requestDetail)); //TODO - spec needs to clarify whether this should be populated or not
    setReasonCodes(medicationRequest, requestDetail);
    setNotes(medicationRequest, requestDetail);
    if (medicationRequest.getIntent() != MedicationRequestIntent.ORDER) {
        setRepeatInformation(medicationRequest, requestDetail);
    }
    setPrescriptionType(medicationRequest, requestDetail);
    setStatusReason(medicationRequest, requestDetail);
    String dosageInstructionText = requestDetail.getDosageText();
    medicationRequest.addDosageInstruction(new Dosage().setText(dosageInstructionText == null || dosageInstructionText.trim().isEmpty() ? NO_INFORMATION_AVAILABLE : dosageInstructionText).setPatientInstruction(requestDetail.getDosageInstructions()));
    return medicationRequest;
}

Example 10 with FHIRException

use of org.hl7.fhir.exceptions.FHIRException in project gpconnect-demonstrator by nhsconnect.

the class PopulateMedicationBundle method getPractitionerIds.

private Set<String> getPractitionerIds(MedicationStatement medStatement, List<MedicationRequest> allMedReqs) {
    Set<String> practitionerIds = new HashSet<>();
    medStatement.getNote().forEach(note -> {
        try {
            if (note.getAuthorReference() != null && note.getAuthorReference().getReference() != null && note.getAuthorReference().getReference().startsWith("Practitioner")) {
                String[] split = note.getAuthorReference().getReference().split("/");
                practitionerIds.add(split[1]);
            }
        } catch (FHIRException e) {
            throw new UnprocessableEntityException(e.getMessage());
        }
    });
    allMedReqs.forEach(medReq -> {
        medReq.getNote().forEach(note -> {
            try {
                if (note.getAuthorReference() != null && note.getAuthorReference().getReference() != null && note.getAuthorReference().getReference().startsWith("Practitioner")) {
                    String[] split = note.getAuthorReference().getReference().split("/");
                    practitionerIds.add(split[1]);
                }
            } catch (FHIRException e) {
                throw new UnprocessableEntityException(e.getMessage());
            }
        });
        if (medReq.getRecorder() != null && medReq.getRecorder().getReference().startsWith("Practitioner")) {
            String[] split = medReq.getRecorder().getReference().split("/");
            practitionerIds.add(split[1]);
        }
    });
    return practitionerIds;
}