use of org.hl7.fhir.dstu3.model.Parameters.ParametersParameterComponent in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method registerPatient.
@Operation(name = REGISTER_PATIENT_OPERATION_NAME)
public Bundle registerPatient(@ResourceParam Parameters params) {
Patient registeredPatient = null;
validateParameterNames(params, registerPatientParams);
Patient unregisteredPatient = params.getParameter().stream().filter(param -> "registerPatient".equalsIgnoreCase(param.getName())).map(ParametersParameterComponent::getResource).map(Patient.class::cast).findFirst().orElse(null);
String nnn = nhsNumber.fromPatientResource(unregisteredPatient);
// if its patient 14 spoof not on PDS and return the required error
if (nnn.equals(patientNotOnSpine)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) not present on PDS", nnn)), SystemCode.INVALID_PATIENT_DEMOGRAPHICS, IssueType.INVALID);
} else if (nnn.equals(patientSuperseded)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) is superseded", nnn)), SystemCode.INVALID_NHS_NUMBER, IssueType.INVALID);
}
if (unregisteredPatient != null) {
validatePatient(unregisteredPatient);
// check if the patient already exists
PatientDetails patientDetails = patientSearch.findPatient(nhsNumber.fromPatientResource(unregisteredPatient));
if (patientDetails == null || IsInactiveTemporaryPatient(patientDetails)) {
if (patientDetails == null) {
patientDetails = registerPatientResourceConverterToPatientDetail(unregisteredPatient);
patientStore.create(patientDetails);
} else {
// reactivate inactive non temporary patient
patientDetails.setRegistrationStatus(ACTIVE_REGISTRATION_STATUS);
updateAddressAndTelecom(unregisteredPatient, patientDetails);
patientStore.update(patientDetails);
}
try {
registeredPatient = patientDetailsToRegisterPatientResourceConverter(patientSearch.findPatient(unregisteredPatient.getIdentifierFirstRep().getValue()));
addPreferredBranchSurgeryExtension(registeredPatient);
} catch (FHIRException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
} else if (patientDetails.isDeceased() || patientDetails.isSensitive()) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new InvalidRequestException(String.format("Patient (NHS number - %s) has invalid demographics", nnn)), SystemCode.INVALID_PATIENT_DEMOGRAPHICS, IssueType.INVALID);
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnclassifiedServerFailureException(409, String.format("Patient (NHS number - %s) already exists", nnn)), SystemCode.DUPLICATE_REJECTED, IssueType.INVALID);
}
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Patient record not found"), SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
Bundle bundle = new Bundle().setType(BundleType.SEARCHSET);
bundle.getMeta().addProfile(SystemURL.SD_GPC_SRCHSET_BUNDLE);
bundle.addEntry().setResource(registeredPatient);
return bundle;
}
use of org.hl7.fhir.dstu3.model.Parameters.ParametersParameterComponent in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method StructuredRecordOperation.
@Operation(name = GET_STRUCTURED_RECORD_OPERATION_NAME)
public Bundle StructuredRecordOperation(@ResourceParam Parameters params) throws FHIRException {
Bundle structuredBundle = new Bundle();
Boolean getAllergies = false;
Boolean includeResolved = false;
Boolean getMedications = false;
Boolean includePrescriptionIssues = false;
Period medicationPeriod = null;
String NHS = getNhsNumber(params);
PatientDetails patientDetails = patientSearch.findPatient(NHS);
// see https://nhsconnect.github.io/gpconnect/accessrecord_structured_development_retrieve_patient_record.html#error-handling
if (patientDetails == null || patientDetails.isSensitive() || patientDetails.isDeceased() || !patientDetails.isActive()) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ResourceNotFoundException("No patient details found for patient ID: " + NHS), SystemCode.PATIENT_NOT_FOUND, IssueType.NOTFOUND);
}
if (NHS.equals(patientNoconsent)) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new ForbiddenOperationException("No patient consent to share for patient ID: " + NHS), SystemCode.NO_PATIENT_CONSENT, IssueType.FORBIDDEN);
}
operationOutcome = null;
for (ParametersParameterComponent param : params.getParameter()) {
if (validateParametersName(param.getName())) {
if (param.getName().equals(SystemConstants.INCLUDE_ALLERGIES)) {
getAllergies = true;
if (param.getPart().isEmpty()) {
// addWarningIssue(param, IssueType.REQUIRED, "Miss parameter part : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES);
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
boolean includeResolvedParameterPartPresent = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_RESOLVED_ALLERGIES)) {
if (paramPart.getValue() instanceof BooleanType) {
includeResolved = Boolean.valueOf(paramPart.getValue().primitiveValue());
includeResolvedParameterPartPresent = true;
} else {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!includeResolvedParameterPartPresent) {
throw OperationOutcomeFactory.buildOperationOutcomeException(new UnprocessableEntityException("Miss parameter : " + SystemConstants.INCLUDE_RESOLVED_ALLERGIES), SystemCode.INVALID_PARAMETER, IssueType.REQUIRED);
}
}
if (param.getName().equals(SystemConstants.INCLUDE_MEDICATION)) {
getMedications = true;
boolean isIncludedPrescriptionIssuesExist = false;
for (ParametersParameterComponent paramPart : param.getPart()) {
if (paramPart.getName().equals(SystemConstants.INCLUDE_PRESCRIPTION_ISSUES)) {
if (paramPart.getValue() instanceof BooleanType) {
includePrescriptionIssues = Boolean.valueOf(paramPart.getValue().primitiveValue());
isIncludedPrescriptionIssuesExist = true;
}
} else if (paramPart.getName().equals(SystemConstants.MEDICATION_SEARCH_FROM_DATE) && paramPart.getValue() instanceof DateType) {
DateType startDateDt = (DateType) paramPart.getValue();
medicationPeriod = new Period();
medicationPeriod.setStart(startDateDt.getValue());
medicationPeriod.setEnd(null);
String startDate = startDateDt.asStringValue();
if (!validateStartDateParamAndEndDateParam(startDate, null)) {
// addWarningIssue(param, paramPart, IssueType.INVALID, "Invalid date used");
}
} else {
addWarningIssue(param, paramPart, IssueType.NOTSUPPORTED);
// throw OperationOutcomeFactory.buildOperationOutcomeException(
// new UnprocessableEntityException("Incorrect parameter passed : " + paramPart.getName()),
// SystemCode.INVALID_PARAMETER, IssueType.INVALID);
}
}
if (!isIncludedPrescriptionIssuesExist) {
// # 1.2.6 now defaults to true if not provided
includePrescriptionIssues = true;
}
}
} else {
// invalid parameter
addWarningIssue(param, IssueType.NOTSUPPORTED);
}
}
// for parameter
// Add Patient
Patient patient = patientDetailsToPatientResourceConverter(patientDetails);
if (patient.getIdentifierFirstRep().getValue().equals(NHS)) {
structuredBundle.addEntry().setResource(patient);
}
// Organization from patient
Set<String> orgIds = new HashSet<>();
orgIds.add(patientDetails.getManagingOrganization());
// Practitioner from patient
Set<String> practitionerIds = new HashSet<>();
List<Reference> practitionerReferenceList = patient.getGeneralPractitioner();
practitionerReferenceList.forEach(practitionerReference -> {
String[] pracRef = practitionerReference.getReference().split("/");
if (pracRef.length > 1) {
practitionerIds.add(pracRef[1]);
}
});
if (getAllergies) {
structuredBundle = structuredAllergyIntoleranceBuilder.buildStructuredAllergyIntolerence(NHS, practitionerIds, structuredBundle, includeResolved);
}
if (getMedications) {
structuredBundle = populateMedicationBundle.addMedicationBundleEntries(structuredBundle, patientDetails, includePrescriptionIssues, medicationPeriod, practitionerIds, orgIds);
}
// Add all practitioners and practitioner roles
for (String practitionerId : practitionerIds) {
Practitioner pracResource = practitionerResourceProvider.getPractitionerById(new IdType(practitionerId));
structuredBundle.addEntry().setResource(pracResource);
List<PractitionerRole> practitionerRoleList = practitionerRoleResourceProvider.getPractitionerRoleByPracticionerId(new IdType(practitionerId));
for (PractitionerRole role : practitionerRoleList) {
String[] split = role.getOrganization().getReference().split("/");
orgIds.add(split[1]);
structuredBundle.addEntry().setResource(role);
}
}
// Add all organizations
for (String orgId : orgIds) {
OrganizationDetails organizationDetails = organizationSearch.findOrganizationDetails(new Long(orgId));
Organization organization = organizationResourceProvider.convertOrganizationDetailsToOrganization(organizationDetails);
structuredBundle.addEntry().setResource(organization);
}
structuredBundle.setType(BundleType.COLLECTION);
structuredBundle.getMeta().addProfile(SystemURL.SD_GPC_STRUCTURED_BUNDLE);
if (operationOutcome != null) {
structuredBundle.addEntry().setResource(operationOutcome);
} else {
removeDuplicateResources(structuredBundle);
}
return structuredBundle;
}
use of org.hl7.fhir.dstu3.model.Parameters.ParametersParameterComponent in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method addWarningIssue.
/**
* see
* https://gpconnect-1-2-4.netlify.com/accessrecord_structured_development_version_compatibility.html
* add an issue to the OperationOutcome to be returned in a successful
* response bundle this is for forward compatibility as specified in 1.2.4
*
* @param param
* @param paramPart
* @param issueType
* @param details lower level details to be added to the text element
*/
private void addWarningIssue(ParametersParameterComponent param, ParametersParameterComponent paramPart, IssueType issueType, String details) {
if (operationOutcome == null) {
createOperationOutcome();
}
OperationOutcomeIssueComponent issue = new OperationOutcomeIssueComponent();
issue.setSeverity(OperationOutcome.IssueSeverity.WARNING);
CodeableConcept codeableConcept = new CodeableConcept();
Coding coding = new Coding();
coding.setSystem(VS_GPC_ERROR_WARNING_CODE);
switch(issueType) {
case NOTSUPPORTED:
issue.setCode(issueType);
coding.setCode(SystemCode.NOT_IMPLEMENTED);
coding.setDisplay("Not implemented");
break;
case REQUIRED:
issue.setCode(issueType);
coding.setCode(SystemCode.PARAMETER_NOT_FOUND);
coding.setDisplay("Parameter not found");
break;
case INVALID:
issue.setCode(issueType);
coding.setCode(SystemCode.INVALID_PARAMETER);
coding.setDisplay("Invalid Parameter");
break;
}
codeableConcept.addCoding(coding);
issue.setDetails(codeableConcept);
String locus = paramPart != null ? "." + paramPart.getName() : "";
issue.setDiagnostics(param.getName() + locus);
if (details == null) {
// mod to remove more informative text which was off spec
codeableConcept.setText(param.getName() + locus + " is an unrecognised parameter");
} else {
codeableConcept.setText(details);
}
operationOutcome.addIssue(issue);
}
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