Examples with Reference org.hl7.fhir.dstu2.model.Reference used on opensource projects

Example 91 with Reference

use of org.hl7.fhir.dstu2.model.Reference in project cqf-ruler by DBCG.

the class CollectDataProviderIT method testCollectData.

@Test
public void testCollectData() {
    // Create test Measure
    String cql = CqlBuilder.newCqlLibrary("4.0.1").addExpression("Initial Population", "exists([Observation])").build();
    Library lib = Libraries.library(cql);
    Measure m = MeasureBuilder.newCohortMeasure(lib).build();
    this.update(lib);
    this.update(m);
    // Create test data
    Patient john = Patients.john_doe();
    this.create(john);
    Observation obs = newResource(Observation.class).setSubject(new Reference(john));
    this.create(obs);
    Encounter enc = newResource(Encounter.class).setSubject(new Reference(john));
    this.create(enc);
    // Submit it
    Parameters results = collectDataProvider.collectData(new SystemRequestDetails(), m.getIdElement(), "2019-01-01", "2019-12-31", Ids.simple(john), null, null);
    List<ParametersParameterComponent> resources = org.opencds.cqf.ruler.utility.r4.Parameters.getPartsByName(results, "resource");
    assertEquals(1, resources.size());
    assertEquals("Observation", resources.get(0).getResource().fhirType());
    List<ParametersParameterComponent> reports = org.opencds.cqf.ruler.utility.r4.Parameters.getPartsByName(results, "measureReport");
    assertEquals(1, reports.size());
    assertEquals("MeasureReport", reports.get(0).getResource().fhirType());
}

Example 92 with Reference

use of org.hl7.fhir.dstu2.model.Reference in project cqf-ruler by DBCG.

the class Session method applyPlanDefinition.

@Operation(name = "$apply", idempotent = true, type = PlanDefinition.class)
public CarePlan applyPlanDefinition(RequestDetails theRequest, @IdParam IdType theId, @OperationParam(name = "patient") String patientId, @OperationParam(name = "encounter") String encounterId, @OperationParam(name = "practitioner") String practitionerId, @OperationParam(name = "organization") String organizationId, @OperationParam(name = "userType") String userType, @OperationParam(name = "userLanguage") String userLanguage, @OperationParam(name = "userTaskContext") String userTaskContext, @OperationParam(name = "setting") String setting, @OperationParam(name = "settingContext") String settingContext) throws IOException, FHIRException {
    PlanDefinition planDefinition = this.planDefinitionDao.read(theId);
    if (planDefinition == null) {
        throw new IllegalArgumentException("Couldn't find PlanDefinition " + theId);
    }
    logger.info("Performing $apply operation on PlanDefinition/{}", theId);
    CarePlanBuilder builder = new CarePlanBuilder();
    builder.buildInstantiatesCanonical(planDefinition.getUrl()).buildSubject(new Reference(patientId)).buildStatus(CarePlan.CarePlanStatus.DRAFT);
    if (encounterId != null)
        builder.buildEncounter(new Reference(encounterId));
    if (practitionerId != null)
        builder.buildAuthor(new Reference(practitionerId));
    if (organizationId != null)
        builder.buildAuthor(new Reference(organizationId));
    if (userLanguage != null)
        builder.buildLanguage(userLanguage);
    // Each Group of actions shares a RequestGroup
    RequestGroupBuilder requestGroupBuilder = new RequestGroupBuilder().buildStatus().buildIntent();
    Session session = new Session(planDefinition, builder, patientId, encounterId, practitionerId, organizationId, userType, userLanguage, userTaskContext, setting, settingContext, requestGroupBuilder);
    return (CarePlan) ContainedHelper.liftContainedResourcesToParent(resolveActions(session, theRequest));
}

Example 93 with Reference

use of org.hl7.fhir.dstu2.model.Reference in project cqf-ruler by DBCG.

the class DataOperationsProvider method getLibraryFromMeasure.

public Library getLibraryFromMeasure(Measure measure, RequestDetails theRequestDetails) {
    Iterator<Reference> var6 = measure.getLibrary().iterator();
    String libraryIdOrCanonical = null;
    // use the first library
    while (var6.hasNext() && libraryIdOrCanonical == null) {
        Reference ref = var6.next();
        if (ref != null) {
            libraryIdOrCanonical = ref.getReference();
        }
    }
    Library library = read(new IdType(libraryIdOrCanonical), theRequestDetails);
    if (library == null) {
        library = search(Library.class, Searches.byCanonical(libraryIdOrCanonical), theRequestDetails).firstOrNull();
    }
    return library;
}

Example 94 with Reference

use of org.hl7.fhir.dstu2.model.Reference in project cqf-ruler by DBCG.

the class Session method resolveActions.

private CarePlan resolveActions(RequestDetails theRequest, Session session) {
    for (PlanDefinition.PlanDefinitionActionComponent action : session.getPlanDefinition().getAction()) {
        // TODO - Apply input/output dataRequirements?
        if (meetsConditions(theRequest, session, action)) {
            Resource result = resolveDefinition(theRequest, session, action);
            RequestGroupActionComponent currentActionTarget = null;
            if (result != null) {
                currentActionTarget = new RequestGroupActionBuilder().buildResource(new Reference("#" + result.getId())).build();
                session.getRequestGroupBuilder().buildContained(result).addAction(currentActionTarget);
            }
            resolveDynamicActions(theRequest, session, currentActionTarget, action);
        }
    }
    RequestGroup result = session.getRequestGroupBuilder().build();
    if (result.getId() == null) {
        result.setId(UUID.randomUUID().toString());
    }
    session.getCarePlanBuilder().buildContained(result).buildActivity(new CarePlanActivityBuilder().buildReference(new Reference("#" + result.getId())).build());
    return session.getCarePlan();
}

Example 95 with Reference

use of org.hl7.fhir.dstu2.model.Reference in project cqf-ruler by DBCG.

the class Session method resolveDefinition.

private Resource resolveDefinition(RequestDetails theRequest, Session session, PlanDefinition.PlanDefinitionActionComponent action) {
    Resource result = null;
    if (action.hasDefinition()) {
        logger.debug("Resolving definition: {}", action.getDefinition().getReference());
        Reference definition = action.getDefinition();
        if (definition.getId().contains(session.getPlanDefinition().fhirType())) {
            IdType id = new IdType(definition.getId());
            CarePlan plan;
            try {
                plan = applyPlanDefinition(theRequest, id, session.getPatientId(), session.getEncounterId(), session.getPractitionerId(), session.getOrganizationId(), session.getUserType(), session.getUserLanguage(), session.getUserTaskContext(), session.getSetting(), session.getSettingContext());
                if (plan.getId() == null) {
                    plan.setId(UUID.randomUUID().toString());
                }
                // Add an action to the request group which points to this CarePlan
                session.getRequestGroupBuilder().buildContained(plan).addAction(new RequestGroupActionBuilder().buildResource(new Reference("#" + plan.getId())).build());
                for (Reference r : plan.getDefinition()) {
                    session.getCarePlanBuilder().buildDefinition(r);
                }
                result = plan;
            } catch (IOException e) {
                e.printStackTrace();
                logger.error("nested plan failed");
            }
        } else {
            try {
                if (action.getDefinition().getReferenceElement().getIdPart().startsWith("#")) {
                    result = this.activityDefinitionApplyProvider.resolveActivityDefinition((ActivityDefinition) resolveContained(session.getPlanDefinition(), action.getDefinition().getReferenceElement().getIdPart()), session.getPatientId(), session.getPractitionerId(), session.getOrganizationId(), theRequest);
                } else {
                    result = this.activityDefinitionApplyProvider.apply(theRequest, new IdType(action.getDefinition().getReferenceElement().getIdPart()), session.getPatientId(), session.getEncounterId(), session.getPractitionerId(), session.getOrganizationId(), null, session.getUserLanguage(), session.getUserTaskContext(), session.getSetting(), session.getSettingContext());
                }
                if (result.getId() == null) {
                    logger.warn("ActivityDefinition {} returned resource with no id, setting one", action.getDefinition().getReferenceElement().getIdPart());
                    result.setId(UUID.randomUUID().toString());
                }
                session.getRequestGroupBuilder().buildContained(result).addAction(new RequestGroupActionBuilder().buildResource(new Reference("#" + result.getId())).build());
            } catch (Exception e) {
                logger.error("ERROR: ActivityDefinition {} could not be applied and threw exception {}", action.getDefinition(), e.toString());
            }
        }
    }
    return result;
}