use of org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSet10_50 method convertCodeSystemConcept.
public static ValueSet.ConceptDefinitionComponent convertCodeSystemConcept(CodeSystem cs, ConceptDefinitionComponent src) throws FHIRException {
if (src == null || src.isEmpty())
return null;
ValueSet.ConceptDefinitionComponent tgt = new ValueSet.ConceptDefinitionComponent();
ConversionContext10_50.INSTANCE.getVersionConvertor_10_50().copyElement(src, tgt);
tgt.setAbstract(CodeSystemUtilities.isNotSelectable(cs, src));
if (src.hasCode())
tgt.setCode(src.getCode());
if (src.hasDefinition())
tgt.setDefinition(src.getDefinition());
if (src.hasDisplay())
tgt.setDisplay(src.getDisplay());
for (ConceptDefinitionComponent cc : src.getConcept()) tgt.addConcept(convertCodeSystemConcept(cs, cc));
for (CodeSystem.ConceptDefinitionDesignationComponent cc : src.getDesignation()) tgt.addDesignation(convertCodeSystemDesignation(cc));
return tgt;
}
use of org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSet10_50 method processConcept.
public static void processConcept(List<ValueSet.ConceptDefinitionComponent> concepts, ConceptDefinitionComponent cs, CodeSystem srcCS) throws FHIRException {
org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent ct = new org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent();
concepts.add(ct);
ct.setCode(cs.getCode());
ct.setDisplay(cs.getDisplay());
ct.setDefinition(cs.getDefinition());
if (CodeSystemUtilities.isNotSelectable(srcCS, cs))
ct.setAbstract(true);
for (org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionDesignationComponent csd : cs.getDesignation()) {
org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionDesignationComponent cst = new org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionDesignationComponent();
cst.setLanguage(csd.getLanguage());
cst.setUse(Coding10_50.convertCoding(csd.getUse()));
cst.setValue(csd.getValue());
}
for (ConceptDefinitionComponent csc : cs.getConcept()) processConcept(ct.getConcept(), csc, srcCS);
}
use of org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class DicomPackageBuilder method buildCodeSystem.
private CodeSystem buildCodeSystem() throws ParserConfigurationException, FileNotFoundException, SAXException, IOException {
DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
factory.setNamespaceAware(true);
DocumentBuilder builder = factory.newDocumentBuilder();
Document doc = builder.parse(new FileInputStream(Utilities.path(source, "Resources", "Ontology", "DCM", "dcm.owl")));
Element rdf = doc.getDocumentElement();
Element d = XMLUtil.getFirstChild(rdf);
version = processVersion(XMLUtil.getNamedChildText(d, "versionInfo"));
CodeSystem cs = new CodeSystem();
cs.setId("DCM");
cs.setUrl("http://dicom.nema.org/resources/ontology/DCM");
cs.setVersion(version);
cs.setName("DICOMTerminologyDefinitions");
cs.setTitle("DICOM Controlled Terminology Definitions");
cs.getIdentifier().add(new Identifier().setSystem("urn:ietf:rfc:3986").setValue("urn:oid:1.2.840.10008.2.16.4"));
cs.setStatus(PublicationStatus.ACTIVE);
cs.setExperimental(false);
cs.setPublisher("FHIR Project on behalf of DICOM");
cs.setDate(new Date());
cs.setDescription("DICOM Code Definitions (Coding Scheme Designator \"DCM\" Coding Scheme Version " + version);
cs.setPurpose("This code system is published as part of FHIR in order to make the codes available to FHIR terminology services and so implementers can easily leverage the codes");
cs.setCopyright("These codes are excerpted from Digital Imaging and Communications in Medicine (DICOM) Standard, Part 16: Content Mapping Resource, Copyright © 2011 by the National Electrical Manufacturers Association.");
cs.setCaseSensitive(true);
cs.setValueSet("http://dicom.nema.org/resources/ValueSet/all");
cs.setContent(CodeSystemContentMode.COMPLETE);
d = XMLUtil.getNextSibling(d);
while (d != null) {
String code = XMLUtil.getNamedChildText(d, "notation");
String display = XMLUtil.getNamedChildText(d, "prefLabel");
String definition = XMLUtil.getNamedChildText(d, "definition");
ConceptDefinitionComponent cc = new ConceptDefinitionComponent();
cs.getConcept().add(cc);
cc.setCode(code);
cc.setDisplay(display);
cc.setDefinition(definition);
d = XMLUtil.getNextSibling(d);
}
return cs;
}
use of org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class ICPC2Importer method processClass.
private void processClass(Element cls, Map<String, ConceptDefinitionComponent> concepts, CodeSystem define) throws FHIRFormatError {
ConceptDefinitionComponent concept = new ConceptDefinitionComponent();
concept.setCode(cls.getAttribute("code"));
concept.setDefinition(getRubric(cls, "preferred"));
String s = getRubric(cls, "shortTitle");
if (s != null && !s.equals(concept.getDefinition()))
concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("shortTitle")).setValue(s);
s = getRubric(cls, "inclusion");
if (s != null)
concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("inclusion")).setValue(s);
s = getRubric(cls, "exclusion");
if (s != null)
concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("exclusion")).setValue(s);
s = getRubric(cls, "criteria");
if (s != null)
concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("criteria")).setValue(s);
s = getRubric(cls, "consider");
if (s != null)
concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("consider")).setValue(s);
s = getRubric(cls, "note");
if (s != null)
concept.addDesignation().setUse(new Coding().setSystem("http://hl7.org/fhir/sid/icpc2/rubrics").setCode("note")).setValue(s);
concepts.put(concept.getCode(), concept);
List<Element> children = new ArrayList<Element>();
XMLUtil.getNamedChildren(cls, "SubClass", children);
if (children.size() > 0)
CodeSystemUtilities.setNotSelectable(define, concept);
Element parent = XMLUtil.getNamedChild(cls, "SuperClass");
if (parent == null) {
define.addConcept(concept);
} else {
ConceptDefinitionComponent p = concepts.get(parent.getAttribute("code"));
p.getConcept().add(concept);
}
}
use of org.hl7.fhir.dstu2.model.ValueSet.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class CodeSystem method setProperty.
@Override
public void setProperty(String name, Base value) throws FHIRException {
if (name.equals("url"))
// UriType
this.url = castToUri(value);
else if (name.equals("identifier"))
// Identifier
this.identifier = castToIdentifier(value);
else if (name.equals("version"))
// StringType
this.version = castToString(value);
else if (name.equals("name"))
// StringType
this.name = castToString(value);
else if (name.equals("status"))
// Enumeration<ConformanceResourceStatus>
this.status = new ConformanceResourceStatusEnumFactory().fromType(value);
else if (name.equals("experimental"))
// BooleanType
this.experimental = castToBoolean(value);
else if (name.equals("publisher"))
// StringType
this.publisher = castToString(value);
else if (name.equals("contact"))
this.getContact().add((CodeSystemContactComponent) value);
else if (name.equals("date"))
// DateTimeType
this.date = castToDateTime(value);
else if (name.equals("description"))
// StringType
this.description = castToString(value);
else if (name.equals("useContext"))
this.getUseContext().add(castToCodeableConcept(value));
else if (name.equals("requirements"))
// StringType
this.requirements = castToString(value);
else if (name.equals("copyright"))
// StringType
this.copyright = castToString(value);
else if (name.equals("caseSensitive"))
// BooleanType
this.caseSensitive = castToBoolean(value);
else if (name.equals("valueSet"))
// UriType
this.valueSet = castToUri(value);
else if (name.equals("compositional"))
// BooleanType
this.compositional = castToBoolean(value);
else if (name.equals("versionNeeded"))
// BooleanType
this.versionNeeded = castToBoolean(value);
else if (name.equals("content"))
// Enumeration<CodeSystemContentMode>
this.content = new CodeSystemContentModeEnumFactory().fromType(value);
else if (name.equals("count"))
// UnsignedIntType
this.count = castToUnsignedInt(value);
else if (name.equals("filter"))
this.getFilter().add((CodeSystemFilterComponent) value);
else if (name.equals("property"))
this.getProperty().add((CodeSystemPropertyComponent) value);
else if (name.equals("concept"))
this.getConcept().add((ConceptDefinitionComponent) value);
else
super.setProperty(name, value);
}
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