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Example 16 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.dstu2.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method getConceptForCodeFromExpansion.

private ConceptDefinitionComponent getConceptForCodeFromExpansion(List<ValueSetExpansionContainsComponent> list, String code) {
    for (ValueSetExpansionContainsComponent c : list) {
        if (code.equals(c.getCode())) {
            ConceptDefinitionComponent res = new ConceptDefinitionComponent();
            res.setCode(c.getCode());
            res.setDisplay(c.getDisplay());
            return res;
        }
        ConceptDefinitionComponent v = getConceptForCodeFromExpansion(c.getContains(), code);
        if (v != null)
            return v;
    }
    return null;
}
Also used : ValueSetExpansionContainsComponent(org.hl7.fhir.dstu3.model.ValueSet.ValueSetExpansionContainsComponent) ConceptDefinitionComponent(org.hl7.fhir.dstu3.model.CodeSystem.ConceptDefinitionComponent)

Example 17 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.dstu2.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method buildCoding.

private Coding buildCoding(String uri, String code) throws FHIRException {
    // if we can get this as a valueSet, we will
    String system = null;
    String display = null;
    ValueSet vs = Utilities.noString(uri) ? null : worker.fetchResourceWithException(ValueSet.class, uri);
    if (vs != null) {
        ValueSetExpansionOutcome vse = worker.expandVS(vs, true, false);
        if (vse.getError() != null)
            throw new FHIRException(vse.getError());
        CommaSeparatedStringBuilder b = new CommaSeparatedStringBuilder();
        for (ValueSetExpansionContainsComponent t : vse.getValueset().getExpansion().getContains()) {
            if (t.hasCode())
                b.append(t.getCode());
            if (code.equals(t.getCode()) && t.hasSystem()) {
                system = t.getSystem();
                display = t.getDisplay();
                break;
            }
            if (code.equalsIgnoreCase(t.getDisplay()) && t.hasSystem()) {
                system = t.getSystem();
                display = t.getDisplay();
                break;
            }
        }
        if (system == null)
            throw new FHIRException("The code '" + code + "' is not in the value set '" + uri + "' (valid codes: " + b.toString() + "; also checked displays)");
    } else
        system = uri;
    ValidationResult vr = worker.validateCode(system, code, null);
    if (vr != null && vr.getDisplay() != null)
        display = vr.getDisplay();
    return new Coding().setSystem(system).setCode(code).setDisplay(display);
}
Also used : ValueSetExpansionContainsComponent(org.hl7.fhir.dstu3.model.ValueSet.ValueSetExpansionContainsComponent) Coding(org.hl7.fhir.dstu3.model.Coding) ValueSetExpansionOutcome(org.hl7.fhir.dstu3.terminologies.ValueSetExpander.ValueSetExpansionOutcome) CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder) ValidationResult(org.hl7.fhir.dstu3.context.IWorkerContext.ValidationResult) ValueSet(org.hl7.fhir.dstu3.model.ValueSet) FHIRException(org.hl7.fhir.exceptions.FHIRException)

Example 18 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.dstu2.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method doServerIncludeCodes.

private void doServerIncludeCodes(ConceptSetComponent inc, boolean heirarchical, List<ValueSetExpansionParameterComponent> params, List<ValueSet> imports, Parameters expParams) throws FHIRException {
    ValueSetExpansionOutcome vso = context.expandVS(inc, heirarchical);
    if (vso.getError() != null)
        throw new TerminologyServiceException("Unable to expand imported value set: " + vso.getError());
    ValueSet vs = vso.getValueset();
    if (vs.hasVersion())
        if (!existsInParams(params, "version", new UriType(vs.getUrl() + "|" + vs.getVersion())))
            params.add(new ValueSetExpansionParameterComponent().setName("version").setValue(new UriType(vs.getUrl() + "|" + vs.getVersion())));
    for (ValueSetExpansionParameterComponent p : vso.getValueset().getExpansion().getParameter()) {
        if (!existsInParams(params, p.getName(), p.getValue()))
            params.add(p);
    }
    for (ValueSetExpansionContainsComponent cc : vs.getExpansion().getContains()) {
        addCodeAndDescendents(cc, null, expParams, imports);
    }
}
Also used : ValueSetExpansionContainsComponent(org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionContainsComponent) ValueSetExpansionParameterComponent(org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionParameterComponent) NoTerminologyServiceException(org.hl7.fhir.exceptions.NoTerminologyServiceException) TerminologyServiceException(org.hl7.fhir.exceptions.TerminologyServiceException) ValueSet(org.hl7.fhir.r4.model.ValueSet) UriType(org.hl7.fhir.r4.model.UriType)

Example 19 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.dstu2.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method addCodeAndDescendents.

private void addCodeAndDescendents(CodeSystem cs, String system, ConceptDefinitionComponent def, ValueSetExpansionContainsComponent parent, Parameters expParams, List<ValueSet> filters, ConceptDefinitionComponent exclusion) throws FHIRException {
    def.checkNoModifiers("Code in Code System", "expanding");
    if (exclusion != null) {
        if (exclusion.getCode().equals(def.getCode()))
            // excluded.
            return;
    }
    if (!CodeSystemUtilities.isDeprecated(cs, def)) {
        ValueSetExpansionContainsComponent np = null;
        boolean abs = CodeSystemUtilities.isNotSelectable(cs, def);
        boolean inc = CodeSystemUtilities.isInactive(cs, def);
        if (canBeHeirarchy || !abs)
            np = addCode(system, def.getCode(), def.getDisplay(), parent, def.getDesignation(), expParams, abs, inc, filters);
        for (ConceptDefinitionComponent c : def.getConcept()) addCodeAndDescendents(cs, system, c, np, expParams, filters, exclusion);
    } else {
        for (ConceptDefinitionComponent c : def.getConcept()) addCodeAndDescendents(cs, system, c, null, expParams, filters, exclusion);
    }
}
Also used : ValueSetExpansionContainsComponent(org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionContainsComponent) ConceptDefinitionComponent(org.hl7.fhir.r4.model.CodeSystem.ConceptDefinitionComponent)

Example 20 with ValueSetExpansionContainsComponent

use of org.hl7.fhir.dstu2.model.ValueSet.ValueSetExpansionContainsComponent in project org.hl7.fhir.core by hapifhir.

the class ValueSetExpanderSimple method addCodeAndDescendents.

private void addCodeAndDescendents(ValueSetExpansionContainsComponent focus, ValueSetExpansionContainsComponent parent, Parameters expParams, List<ValueSet> filters) throws FHIRException {
    focus.checkNoModifiers("Expansion.contains", "expanding");
    ValueSetExpansionContainsComponent np = addCode(focus.getSystem(), focus.getCode(), focus.getDisplay(), parent, convert(focus.getDesignation()), expParams, focus.getAbstract(), focus.getInactive(), filters);
    for (ValueSetExpansionContainsComponent c : focus.getContains()) addCodeAndDescendents(focus, np, expParams, filters);
}
Also used : ValueSetExpansionContainsComponent(org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionContainsComponent)

Aggregations

ValueSetExpansionContainsComponent (org.hl7.fhir.r5.model.ValueSet.ValueSetExpansionContainsComponent)32 ValueSetExpansionContainsComponent (org.hl7.fhir.r4b.model.ValueSet.ValueSetExpansionContainsComponent)22 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)20 ValueSetExpansionContainsComponent (org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionContainsComponent)17 ValueSet (org.hl7.fhir.r4.model.ValueSet)9 HashMap (java.util.HashMap)8 ValueSet (org.hl7.fhir.r5.model.ValueSet)8 ArrayList (java.util.ArrayList)7 ValueSetExpansionContainsComponent (org.hl7.fhir.dstu2.model.ValueSet.ValueSetExpansionContainsComponent)7 ValueSetExpansionContainsComponent (org.hl7.fhir.dstu2016may.model.ValueSet.ValueSetExpansionContainsComponent)7 IOException (java.io.IOException)6 ValueSetExpansionContainsComponent (org.hl7.fhir.dstu3.model.ValueSet.ValueSetExpansionContainsComponent)6 ValueSetExpansionComponent (org.hl7.fhir.r4.model.ValueSet.ValueSetExpansionComponent)6 ConceptDefinitionComponent (org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent)6 ValueSet (org.hl7.fhir.dstu2.model.ValueSet)5 TerminologyServiceException (org.hl7.fhir.exceptions.TerminologyServiceException)5 CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)5 ValueSet (org.hl7.fhir.dstu2016may.model.ValueSet)4 ValueSet (org.hl7.fhir.r4b.model.ValueSet)4 FHIRException (org.hl7.fhir.exceptions.FHIRException)3