Examples with HTTPVerb org.hl7.fhir.dstu3.model.Bundle.HTTPVerb used on opensource projects

Example 1 with HTTPVerb

use of org.hl7.fhir.dstu3.model.Bundle.HTTPVerb in project cqf-ruler by DBCG.

the class ProcessMessageProvider method processMessageBundle.

@Operation(name = "$process-message-bundle", idempotent = false)
public Bundle processMessageBundle(HttpServletRequest theServletRequest, RequestDetails theRequestDetails, @OperationParam(name = "content", min = 1, max = 1) @Description(formalDefinition = "The message to process (or, if using asynchronous messaging, it may be a response message to accept)") Bundle theMessageToProcess) {
    logger.info("Validating the Bundle");
    Bundle bundle = theMessageToProcess;
    Boolean errorExists = false;
    OperationOutcome outcome = validateBundle(errorExists, bundle);
    if (!errorExists) {
        IVersionSpecificBundleFactory bundleFactory = this.getFhirContext().newBundleFactory();
        bundle.setId(getUUID());
        bundleFactory.initializeWithBundleResource(bundle);
        Bundle dafBundle = (Bundle) bundleFactory.getResourceBundle();
        dafBundle.setTimestamp(new Date());
        this.getDaoRegistry().getResourceDao(Bundle.class).create(dafBundle);
        MessageHeader messageHeader = null;
        String patientId = null;
        String commId = null;
        List<MessageHeader> headers = BundleUtil.toListOfResourcesOfType(this.getFhirContext(), bundle, MessageHeader.class);
        for (MessageHeader mh : headers) {
            messageHeader = mh;
            messageHeader.setId(getUUID());
            Meta meta = messageHeader.getMeta();
            meta.setLastUpdated(new Date());
            messageHeader.setMeta(meta);
        }
        List<IBaseResource> resources = new ArrayList<>();
        List<Patient> patients = BundleUtil.toListOfResourcesOfType(this.getFhirContext(), bundle, Patient.class);
        for (Patient p : patients) {
            patientId = p.getId();
            p.setId(p.getIdElement().toVersionless());
            resources.add(p);
        }
        List<Bundle> bundles = BundleUtil.toListOfResourcesOfType(this.getFhirContext(), bundle, Bundle.class);
        for (Bundle b : bundles) {
            patientId = this.processBundle(b, theRequestDetails);
            b.setId(b.getIdElement().toVersionless());
            resources.add(b);
        }
        for (BundleEntryComponent e : bundle.getEntry()) {
            Resource r = e.getResource();
            if (r == null) {
                continue;
            }
            if (r.fhirType().equals("Bundle") || r.fhirType().equals("MessageHeader") || r.fhirType().equals("Patient")) {
                continue;
            }
            r.setId(r.getIdElement().toVersionless());
            resources.add(r);
        }
        if (patientId != null) {
            commId = constructAndSaveCommunication(patientId);
        }
        if (messageHeader == null) {
            messageHeader = constructMessageHeaderResource();
            BundleEntryComponent entryComp = new BundleEntryComponent();
            entryComp.setResource(messageHeader);
            dafBundle.addEntry(entryComp);
        }
        if (commId != null) {
            List<Reference> referenceList = new ArrayList<>();
            Reference commRef = new Reference();
            commRef.setReference("Communication/" + commId);
            referenceList.add(commRef);
            messageHeader.setFocus(referenceList);
        }
        IVersionSpecificBundleFactory newBundleFactory = this.getFhirContext().newBundleFactory();
        newBundleFactory.addResourcesToBundle(resources, BundleTypeEnum.TRANSACTION, theRequestDetails.getFhirServerBase(), null, null);
        Bundle transactionBundle = (Bundle) newBundleFactory.getResourceBundle();
        for (BundleEntryComponent entry : transactionBundle.getEntry()) {
            UriType uri = new UriType(theRequestDetails.getFhirServerBase() + "/" + entry.getResource().fhirType() + "/" + entry.getResource().getIdElement().getIdPart());
            Enumeration<HTTPVerb> method = new Enumeration<>(new HTTPVerbEnumFactory());
            method.setValue(HTTPVerb.PUT);
            entry.setRequest(new BundleEntryRequestComponent(method, uri));
        }
        @SuppressWarnings("unchecked") IFhirSystemDao<Bundle, Meta> fhirSystemDao = this.getDaoRegistry().getSystemDao();
        fhirSystemDao.transaction(theRequestDetails, transactionBundle);
        return dafBundle;
    } else {
        BundleEntryComponent entryComp = new BundleEntryComponent();
        entryComp.setResource(outcome);
        bundle.addEntry(entryComp);
        return bundle;
    }
}

Example 2 with HTTPVerb

use of org.hl7.fhir.dstu3.model.Bundle.HTTPVerb in project MobileAccessGateway by i4mi.

the class Iti93AddRequestConverter method doCreate.

/**
 * add a new patient
 * @param header
 * @param entriesByReference
 * @return
 * @throws JAXBException
 */
public String doCreate(MessageHeader header, Map<String, BundleEntryComponent> entriesByReference) throws JAXBException {
    PRPAIN201301UV02Type resultMsg = new PRPAIN201301UV02Type();
    resultMsg.setITSVersion("XML_1.0");
    // String UUID.randomUUID().toString();
    resultMsg.setId(new II(config.getPixQueryOid(), uniqueId()));
    // Now
    resultMsg.setCreationTime(new TS(Timestamp.now().toHL7()));
    resultMsg.setProcessingCode(new CS("T", null, null));
    resultMsg.setProcessingModeCode(new CS("T", null, null));
    resultMsg.setInteractionId(new II("2.16.840.1.113883.1.18", "PRPA_IN201301UV02"));
    resultMsg.setAcceptAckCode(new CS("AL", null, null));
    MCCIMT000100UV01Receiver receiver = new MCCIMT000100UV01Receiver();
    resultMsg.addReceiver(receiver);
    receiver.setTypeCode(CommunicationFunctionType.RCV);
    MCCIMT000100UV01Device receiverDevice = new MCCIMT000100UV01Device();
    receiver.setDevice(receiverDevice);
    receiverDevice.setClassCode(EntityClassDevice.DEV);
    receiverDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    receiverDevice.setId(Collections.singletonList(new II(config.getPixReceiverOid(), null)));
    MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender();
    resultMsg.setSender(sender);
    sender.setTypeCode(CommunicationFunctionType.SND);
    MCCIMT000100UV01Device senderDevice = new MCCIMT000100UV01Device();
    sender.setDevice(senderDevice);
    senderDevice.setClassCode(EntityClassDevice.DEV);
    senderDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    senderDevice.setId(Collections.singletonList(new II(config.getPixMySenderOid(), null)));
    PRPAIN201301UV02MFMIMT700701UV01ControlActProcess controlActProcess = new PRPAIN201301UV02MFMIMT700701UV01ControlActProcess();
    resultMsg.setControlActProcess(controlActProcess);
    controlActProcess.setClassCode(ActClassControlAct.CACT);
    controlActProcess.setMoodCode(XActMoodIntentEvent.EVN);
    controlActProcess.setCode(new CD("PRPA_TE201301UV02", null, "2.16.840.1.113883.1.18"));
    for (BundleEntryComponent entry : entriesByReference.values()) {
        if (entry.getResource() instanceof Patient) {
            HTTPVerb method = entry.getRequest().getMethod();
            if (method == null)
                throw new InvalidRequestException("HTTP verb missing in Bundle for Patient resource.");
            Patient in = (Patient) entry.getResource();
            PRPAIN201301UV02MFMIMT700701UV01Subject1 subject = new PRPAIN201301UV02MFMIMT700701UV01Subject1();
            controlActProcess.addSubject(subject);
            subject.setTypeCode("SUBJ");
            // ???
            subject.setContextConductionInd(false);
            PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent registrationEvent = new PRPAIN201301UV02MFMIMT700701UV01RegistrationEvent();
            subject.setRegistrationEvent(registrationEvent);
            registrationEvent.setClassCode(ActClass.REG);
            registrationEvent.setMoodCode(ActMood.EVN);
            // ???
            registrationEvent.setStatusCode(new CS("active", null, null));
            PRPAIN201301UV02MFMIMT700701UV01Subject2 subject1 = new PRPAIN201301UV02MFMIMT700701UV01Subject2();
            registrationEvent.setSubject1(subject1);
            subject1.setTypeCode(ParticipationTargetSubject.SBJ);
            PRPAMT201301UV02Patient patient = new PRPAMT201301UV02Patient();
            subject1.setPatient(patient);
            patient.setClassCode("PAT");
            // ???
            patient.setStatusCode(new CS("active", null, null));
            PRPAMT201301UV02Person patientPerson = new PRPAMT201301UV02Person();
            patient.setPatientPerson(patientPerson);
            patientPerson.setClassCode(EntityClass.PSN);
            patientPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
            // TODO How is the correct mapping done?
            for (Identifier id : in.getIdentifier()) {
                patient.addId(patientIdentifier(id));
            }
            for (HumanName name : in.getName()) {
                patientPerson.addName(transform(name));
            }
            patientPerson.setBirthTime(transform(in.getBirthDateElement()));
            if (in.hasGender()) {
                switch(in.getGender()) {
                    case MALE:
                        patientPerson.setAdministrativeGenderCode(new CE("M", "Male", "2.16.840.1.113883.12.1"));
                        break;
                    case FEMALE:
                        patientPerson.setAdministrativeGenderCode(new CE("F", "Female", "2.16.840.1.113883.12.1"));
                        break;
                    case OTHER:
                        patientPerson.setAdministrativeGenderCode(new CE("A", "Ambiguous", "2.16.840.1.113883.12.1"));
                        break;
                    case UNKNOWN:
                        patientPerson.setAdministrativeGenderCode(new CE("U", "Unknown", "2.16.840.1.113883.12.1"));
                        break;
                }
            }
            if (in.hasAddress())
                patientPerson.setAddr(new ArrayList<AD>());
            for (Address address : in.getAddress()) {
                patientPerson.addAddr(transform(address));
            }
            for (ContactPoint contactPoint : in.getTelecom()) {
                patientPerson.addTelecom(transform(contactPoint));
            }
            List<II> orgIds = new ArrayList<II>();
            Organization managingOrg = getManagingOrganization(in);
            // NULL POINTER CHECK
            for (Identifier id : managingOrg.getIdentifier()) {
                orgIds.add(new II(getScheme(id.getSystem()), null));
            }
            if (in.hasDeceasedBooleanType()) {
                patientPerson.setDeceasedInd(new BL(in.getDeceasedBooleanType().getValue()));
            }
            if (in.hasDeceasedDateTimeType()) {
                patientPerson.setDeceasedTime(transform(in.getDeceasedDateTimeType()));
            }
            if (in.hasMultipleBirthBooleanType()) {
                patientPerson.setMultipleBirthInd(new BL(in.getMultipleBirthBooleanType().getValue()));
            }
            if (in.hasMultipleBirthIntegerType()) {
                patientPerson.setMultipleBirthOrderNumber(new INT(in.getMultipleBirthIntegerType().getValue()));
            }
            if (in.hasMaritalStatus()) {
                patientPerson.setMaritalStatusCode(transform(in.getMaritalStatus()));
            }
            if (in.hasCommunication()) {
                for (PatientCommunicationComponent pcc : in.getCommunication()) {
                    PRPAMT201301UV02LanguageCommunication languageCommunication = new PRPAMT201301UV02LanguageCommunication();
                    languageCommunication.setLanguageCode(transform(pcc.getLanguage()));
                    // NULL POINTER EXCEPTION
                    if (pcc.hasPreferred())
                        languageCommunication.setPreferenceInd(new BL(pcc.getPreferred()));
                    patientPerson.addLanguageCommunication(languageCommunication);
                }
            }
            COCTMT150003UV03Organization providerOrganization = new COCTMT150003UV03Organization();
            patient.setProviderOrganization(providerOrganization);
            providerOrganization.setClassCode(EntityClassOrganization.ORG);
            providerOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
            providerOrganization.setId(orgIds);
            ON name = null;
            if (managingOrg.hasName()) {
                name = new ON();
                name.setMixed(Collections.singletonList(managingOrg.getName()));
                providerOrganization.setName(Collections.singletonList(name));
            }
            COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty();
            contactParty.setClassCode(RoleClassContact.CON);
            for (ContactPoint contactPoint : managingOrg.getTelecom()) {
                contactParty.addTelecom(transform(contactPoint));
            }
            if (managingOrg.hasAddress())
                contactParty.setAddr(new ArrayList<AD>());
            for (Address address : managingOrg.getAddress()) {
                contactParty.addAddr(transform(address));
            }
            if (managingOrg.hasContact()) {
                OrganizationContactComponent occ = managingOrg.getContactFirstRep();
                COCTMT150003UV03Person contactPerson = new COCTMT150003UV03Person();
                contactPerson.setClassCode(EntityClass.PSN);
                contactPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
                if (occ.hasName())
                    contactPerson.setName(Collections.singletonList(transform(occ.getName())));
                contactParty.setContactPerson(contactPerson);
            }
            providerOrganization.setContactParty(Collections.singletonList(contactParty));
            MFMIMT700701UV01Custodian custodian = new MFMIMT700701UV01Custodian();
            registrationEvent.setCustodian(custodian);
            custodian.setTypeCode(ParticipationType.CST);
            COCTMT090003UV01AssignedEntity assignedEntity = new COCTMT090003UV01AssignedEntity();
            custodian.setAssignedEntity(assignedEntity);
            assignedEntity.setClassCode(RoleClassAssignedEntity.ASSIGNED);
            List<II> custIds = new ArrayList<II>();
            custIds.add(new II(getScheme(config.getCustodianOid()), null));
            assignedEntity.setId(custIds);
            // assignedEntity.setId(orgIds);
            COCTMT090003UV01Organization assignedOrganization = new COCTMT090003UV01Organization();
            assignedEntity.setAssignedOrganization(assignedOrganization);
            assignedOrganization.setClassCode(EntityClassOrganization.ORG);
            assignedOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
            if (managingOrg.hasName()) {
                assignedOrganization.setName(Collections.singletonList(name));
            }
        }
    }
    ByteArrayOutputStream out = new ByteArrayOutputStream();
    HL7V3Transformer.marshallMessage(PRPAIN201301UV02Type.class, out, resultMsg);
    String outArray = new String(out.toByteArray());
    return outArray;
}

Example 3 with HTTPVerb

use of org.hl7.fhir.dstu3.model.Bundle.HTTPVerb in project MobileAccessGateway by i4mi.

the class Iti93RequestConverter method iti93ToIti44Converter.

/**
 * convert ITI-93 to ITI-44 request
 * @param requestBundle
 * @return
 * @throws JAXBException
 */
public String iti93ToIti44Converter(@Body Bundle requestBundle) throws JAXBException {
    if (requestBundle.getType() != BundleType.MESSAGE)
        throw new InvalidRequestException("Bundle type must be message");
    BundleEntryComponent headerComponent = requestBundle.getEntryFirstRep();
    if (headerComponent == null)
        throw new InvalidRequestException("First bundle entry must be MessageHeader.");
    Resource headerResource = headerComponent.getResource();
    if (headerResource == null || !(headerResource instanceof MessageHeader))
        throw new InvalidRequestException("First bundle entry must be MessageHeader.");
    MessageHeader header = (MessageHeader) headerResource;
    if (!("urn:ihe:iti:pmir:2019:patient-feed".equals(header.getEventUriType().getValue())))
        throw new InvalidRequestException("Wrong eventUri");
    // use nested bundle
    if (requestBundle.getEntry().size() > 1 && requestBundle.getEntry().get(1).getResource() instanceof Bundle) {
        requestBundle = (Bundle) requestBundle.getEntry().get(1).getResource();
        if (requestBundle.getType() != BundleType.HISTORY)
            throw new InvalidRequestException("Nested bundle type must be history");
    }
    BundleEntryComponent firstEntry = null;
    Map<String, BundleEntryComponent> entriesByReference = new HashMap<String, BundleEntryComponent>();
    for (BundleEntryComponent entry : requestBundle.getEntry()) {
        if (entry.getResource() instanceof Patient) {
            entriesByReference.put("Patient/" + entry.getResource().getIdElement().getIdPart(), entry);
            if (firstEntry == null)
                firstEntry = entry;
        }
    }
    BundleEntryComponent entry = firstEntry;
    HTTPVerb method = entry.getRequest().getMethod();
    if (method == null)
        throw new InvalidRequestException("HTTP verb missing in Bundle for Patient resource.");
    if (method.equals(HTTPVerb.POST)) {
        return doCreate(header, entriesByReference);
    } else if (method.equals(HTTPVerb.PUT)) {
        if (((Patient) entry.getResource()).getActive() == false) {
            return doMerge(header, entriesByReference);
        } else {
            return doUpdate(header, entriesByReference);
        }
    } else if (method.equals(HTTPVerb.DELETE)) {
        return doUpdate(header, entriesByReference);
    }
    throw new InvalidRequestException("Cannot handle request");
}

Example 4 with HTTPVerb

use of org.hl7.fhir.dstu3.model.Bundle.HTTPVerb in project MobileAccessGateway by i4mi.

the class Iti93UpdateRequestConverter method doUpdate.

public String doUpdate(MessageHeader header, Map<String, BundleEntryComponent> entriesByReference) throws JAXBException {
    PRPAIN201302UV02Type resultMsg = new PRPAIN201302UV02Type();
    resultMsg.setITSVersion("XML_1.0");
    // String UUID.randomUUID().toString();
    resultMsg.setId(new II(config.getPixQueryOid(), uniqueId()));
    // Now
    resultMsg.setCreationTime(new TS(Timestamp.now().toHL7()));
    resultMsg.setProcessingCode(new CS("T", null, null));
    resultMsg.setProcessingModeCode(new CS("T", null, null));
    resultMsg.setInteractionId(new II("2.16.840.1.113883.1.18", "PRPA_IN201302UV02"));
    resultMsg.setAcceptAckCode(new CS("AL", null, null));
    MCCIMT000100UV01Receiver receiver = new MCCIMT000100UV01Receiver();
    resultMsg.addReceiver(receiver);
    receiver.setTypeCode(CommunicationFunctionType.RCV);
    MCCIMT000100UV01Device receiverDevice = new MCCIMT000100UV01Device();
    receiver.setDevice(receiverDevice);
    receiverDevice.setClassCode(EntityClassDevice.DEV);
    receiverDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    receiverDevice.setId(Collections.singletonList(new II(config.getPixReceiverOid(), null)));
    MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender();
    resultMsg.setSender(sender);
    sender.setTypeCode(CommunicationFunctionType.SND);
    MCCIMT000100UV01Device senderDevice = new MCCIMT000100UV01Device();
    sender.setDevice(senderDevice);
    senderDevice.setClassCode(EntityClassDevice.DEV);
    senderDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    senderDevice.setId(Collections.singletonList(new II(config.getPixMySenderOid(), null)));
    PRPAIN201302UV02MFMIMT700701UV01ControlActProcess controlActProcess = new PRPAIN201302UV02MFMIMT700701UV01ControlActProcess();
    resultMsg.setControlActProcess(controlActProcess);
    controlActProcess.setClassCode(ActClassControlAct.CACT);
    controlActProcess.setMoodCode(XActMoodIntentEvent.EVN);
    controlActProcess.setCode(new CD("PRPA_TE201302UV02", "2.16.840.1.113883.1.18", null));
    for (BundleEntryComponent entry : entriesByReference.values()) {
        if (entry.getResource() instanceof Patient) {
            HTTPVerb method = entry.getRequest().getMethod();
            if (method == null)
                throw new InvalidRequestException("HTTP verb missing in Bundle for Patient resource.");
            Patient in = (Patient) entry.getResource();
            PRPAIN201302UV02MFMIMT700701UV01Subject1 subject = new PRPAIN201302UV02MFMIMT700701UV01Subject1();
            controlActProcess.addSubject(subject);
            subject.setTypeCode("SUBJ");
            // ???
            subject.setContextConductionInd(false);
            PRPAIN201302UV02MFMIMT700701UV01RegistrationEvent registrationEvent = new PRPAIN201302UV02MFMIMT700701UV01RegistrationEvent();
            subject.setRegistrationEvent(registrationEvent);
            registrationEvent.setClassCode(ActClass.REG);
            registrationEvent.setMoodCode(ActMood.EVN);
            // ???
            registrationEvent.setStatusCode(new CS("active", null, null));
            PRPAIN201302UV02MFMIMT700701UV01Subject2 subject1 = new PRPAIN201302UV02MFMIMT700701UV01Subject2();
            registrationEvent.setSubject1(subject1);
            subject1.setTypeCode(ParticipationTargetSubject.SBJ);
            PRPAMT201302UV02Patient patient = new PRPAMT201302UV02Patient();
            subject1.setPatient(patient);
            patient.setClassCode("PAT");
            PRPAMT201302UV02PatientStatusCode statusCode = new PRPAMT201302UV02PatientStatusCode();
            statusCode.setCode("active");
            // ???
            patient.setStatusCode(statusCode);
            PRPAMT201302UV02PatientPatientPerson patientPerson = new PRPAMT201302UV02PatientPatientPerson();
            patient.setPatientPerson(patientPerson);
            patientPerson.setClassCode(EntityClass.PSN);
            patientPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
            patientPerson.setAsOtherIDs(new ArrayList());
            List<II> orgIds = new ArrayList<II>();
            Set<String> mainIds = new HashSet<String>();
            Organization managingOrg = getManagingOrganization(in);
            for (Identifier id : managingOrg.getIdentifier()) {
                orgIds.add(new II(getScheme(id.getSystem()), null));
                mainIds.add(id.getSystem());
            }
            // TODO How is the correct mapping done?
            for (Identifier id : in.getIdentifier()) {
                boolean isOwn = mainIds.contains(id.getSystem());
                if (isOwn)
                    patient.addId(patientIdentifierUpd(id));
                else {
                    PRPAMT201302UV02OtherIDs asOtherIDs = new PRPAMT201302UV02OtherIDs();
                    PRPAMT201302UV02OtherIDsId id2 = new PRPAMT201302UV02OtherIDsId();
                    id2.setRoot(getScheme(id.getSystem()));
                    id2.setExtension(id.getValue());
                    asOtherIDs.setClassCode("PAT");
                    asOtherIDs.setId(Collections.singletonList(id2));
                    COCTMT150002UV01Organization scopingOrganization = new COCTMT150002UV01Organization();
                    scopingOrganization.setClassCode(EntityClassOrganization.ORG);
                    scopingOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
                    List<II> scopeOrgIds = new ArrayList<II>();
                    scopeOrgIds.add(new II(getScheme(id.getSystem()), null));
                    scopingOrganization.setId(scopeOrgIds);
                    asOtherIDs.setScopingOrganization(scopingOrganization);
                    patientPerson.addAsOtherIDs(asOtherIDs);
                }
            }
            for (HumanName name : in.getName()) {
                patientPerson.addName(transform(name));
            }
            patientPerson.setBirthTime(transform(in.getBirthDateElement()));
            if (in.hasGender()) {
                switch(in.getGender()) {
                    case MALE:
                        patientPerson.setAdministrativeGenderCode(new CE("M", "Male", "2.16.840.1.113883.12.1"));
                        break;
                    case FEMALE:
                        patientPerson.setAdministrativeGenderCode(new CE("F", "Female", "2.16.840.1.113883.12.1"));
                        break;
                    case OTHER:
                        patientPerson.setAdministrativeGenderCode(new CE("A", "Ambiguous", "2.16.840.1.113883.12.1"));
                        break;
                    case UNKNOWN:
                        patientPerson.setAdministrativeGenderCode(new CE("U", "Unknown", "2.16.840.1.113883.12.1"));
                        break;
                }
            }
            if (in.hasAddress())
                patientPerson.setAddr(new ArrayList<AD>());
            for (Address address : in.getAddress()) {
                patientPerson.addAddr(transform(address));
            }
            for (ContactPoint contactPoint : in.getTelecom()) {
                patientPerson.addTelecom(transform(contactPoint));
            }
            if (in.hasDeceasedBooleanType()) {
                patientPerson.setDeceasedInd(new BL(in.getDeceasedBooleanType().getValue()));
            }
            if (in.hasDeceasedDateTimeType()) {
                patientPerson.setDeceasedTime(transform(in.getDeceasedDateTimeType()));
            }
            if (in.hasMultipleBirthBooleanType()) {
                patientPerson.setMultipleBirthInd(new BL(in.getMultipleBirthBooleanType().getValue()));
            }
            if (in.hasMultipleBirthIntegerType()) {
                patientPerson.setMultipleBirthOrderNumber(new INT(in.getMultipleBirthIntegerType().getValue()));
            }
            if (in.hasMaritalStatus()) {
                patientPerson.setMaritalStatusCode(transform(in.getMaritalStatus()));
            }
            if (in.hasCommunication()) {
                for (PatientCommunicationComponent pcc : in.getCommunication()) {
                    PRPAMT201302UV02LanguageCommunication languageCommunication = new PRPAMT201302UV02LanguageCommunication();
                    languageCommunication.setLanguageCode(transform(pcc.getLanguage()));
                    if (pcc.hasPreferred())
                        languageCommunication.setPreferenceInd(new BL(pcc.getPreferred()));
                    patientPerson.addLanguageCommunication(languageCommunication);
                }
            }
            COCTMT150003UV03Organization providerOrganization = new COCTMT150003UV03Organization();
            patient.setProviderOrganization(providerOrganization);
            providerOrganization.setClassCode(EntityClassOrganization.ORG);
            providerOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
            providerOrganization.setId(orgIds);
            ON name = null;
            if (managingOrg.hasName()) {
                name = new ON();
                name.setMixed(Collections.singletonList(managingOrg.getName()));
                providerOrganization.setName(Collections.singletonList(name));
            }
            COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty();
            contactParty.setClassCode(RoleClassContact.CON);
            for (ContactPoint contactPoint : managingOrg.getTelecom()) {
                contactParty.addTelecom(transform(contactPoint));
            }
            if (managingOrg.hasAddress())
                contactParty.setAddr(new ArrayList<AD>());
            for (Address address : managingOrg.getAddress()) {
                contactParty.addAddr(transform(address));
            }
            if (managingOrg.hasContact()) {
                OrganizationContactComponent occ = managingOrg.getContactFirstRep();
                COCTMT150003UV03Person contactPerson = new COCTMT150003UV03Person();
                contactPerson.setClassCode(EntityClass.PSN);
                contactPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
                if (occ.hasName())
                    contactPerson.setName(Collections.singletonList(transform(occ.getName())));
                contactParty.setContactPerson(contactPerson);
            }
            providerOrganization.setContactParty(Collections.singletonList(contactParty));
            MFMIMT700701UV01Custodian custodian = new MFMIMT700701UV01Custodian();
            registrationEvent.setCustodian(custodian);
            custodian.setTypeCode(ParticipationType.CST);
            COCTMT090003UV01AssignedEntity assignedEntity = new COCTMT090003UV01AssignedEntity();
            custodian.setAssignedEntity(assignedEntity);
            assignedEntity.setClassCode(RoleClassAssignedEntity.ASSIGNED);
            List<II> custIds = new ArrayList<II>();
            custIds.add(new II(getScheme(config.getCustodianOid()), null));
            assignedEntity.setId(custIds);
            // assignedEntity.setId(orgIds);
            COCTMT090003UV01Organization assignedOrganization = new COCTMT090003UV01Organization();
            assignedEntity.setAssignedOrganization(assignedOrganization);
            assignedOrganization.setClassCode(EntityClassOrganization.ORG);
            assignedOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
            if (managingOrg.hasName()) {
                assignedOrganization.setName(Collections.singletonList(name));
            }
        }
    }
    ByteArrayOutputStream out = new ByteArrayOutputStream();
    HL7V3Transformer.marshallMessage(PRPAIN201302UV02Type.class, out, resultMsg);
    String outArray = new String(out.toByteArray());
    return outArray;
}

Example 5 with HTTPVerb

use of org.hl7.fhir.dstu3.model.Bundle.HTTPVerb in project MobileAccessGateway by i4mi.

the class Iti93MergeRequestConverter method doMerge.

/**
 * merge request for ITI-93 transaction
 * @param header
 * @param entriesByReference
 * @return
 * @throws JAXBException
 */
public String doMerge(MessageHeader header, Map<String, BundleEntryComponent> entriesByReference) throws JAXBException {
    PRPAIN201304UV02Type resultMsg = new PRPAIN201304UV02Type();
    resultMsg.setITSVersion("XML_1.0");
    // String UUID.randomUUID().toString();
    resultMsg.setId(new II(config.getPixQueryOid(), uniqueId()));
    // Now
    resultMsg.setCreationTime(new TS(Timestamp.now().toHL7()));
    resultMsg.setProcessingCode(new CS("T", null, null));
    resultMsg.setProcessingModeCode(new CS("T", null, null));
    resultMsg.setInteractionId(new II("2.16.840.1.113883.1.18", "PRPA_IN201304UV02"));
    resultMsg.setAcceptAckCode(new CS("AL", null, null));
    MCCIMT000100UV01Receiver receiver = new MCCIMT000100UV01Receiver();
    resultMsg.addReceiver(receiver);
    receiver.setTypeCode(CommunicationFunctionType.RCV);
    MCCIMT000100UV01Device receiverDevice = new MCCIMT000100UV01Device();
    receiver.setDevice(receiverDevice);
    receiverDevice.setClassCode(EntityClassDevice.DEV);
    receiverDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    receiverDevice.setId(Collections.singletonList(new II(config.getPixReceiverOid(), null)));
    MCCIMT000100UV01Sender sender = new MCCIMT000100UV01Sender();
    resultMsg.setSender(sender);
    sender.setTypeCode(CommunicationFunctionType.SND);
    MCCIMT000100UV01Device senderDevice = new MCCIMT000100UV01Device();
    sender.setDevice(senderDevice);
    senderDevice.setClassCode(EntityClassDevice.DEV);
    senderDevice.setDeterminerCode(EntityDeterminer.INSTANCE);
    senderDevice.setId(Collections.singletonList(new II(config.getPixMySenderOid(), null)));
    PRPAIN201304UV02MFMIMT700701UV01ControlActProcess controlActProcess = new PRPAIN201304UV02MFMIMT700701UV01ControlActProcess();
    resultMsg.setControlActProcess(controlActProcess);
    // ???
    controlActProcess.setClassCode(ActClassControlAct.CACT);
    // ???
    controlActProcess.setMoodCode(XActMoodIntentEvent.EVN);
    // ???
    controlActProcess.setCode(new CD("PRPA_TE201304UV02", "2.16.840.1.113883.1.18", null));
    for (BundleEntryComponent entry : entriesByReference.values()) {
        // BundleEntryComponent entry = entriesByReference.get(ref.getReference());
        HTTPVerb method = entry.getRequest().getMethod();
        if (method == null)
            throw new InvalidRequestException("HTTP verb missing in Bundle for Patient resource.");
        Patient basePatient = (Patient) entry.getResource();
        Patient in = null;
        List<Patient> replaced = new ArrayList<Patient>();
        for (PatientLinkComponent linked : basePatient.getLink()) {
            if (linked.getType().equals(LinkType.REPLACEDBY)) {
                Reference other = linked.getOther();
                Patient otherPatient = findPatient(other, entriesByReference, basePatient);
                in = otherPatient;
                replaced.add(basePatient);
            } else if (linked.getType().equals(LinkType.REPLACES)) {
                Reference other = linked.getOther();
                Patient otherPatient = findPatient(other, entriesByReference, basePatient);
                in = basePatient;
                replaced.add(otherPatient);
            }
        }
        if (in == null || replaced.isEmpty())
            throw new InvalidRequestException("Cannot determine Patients to merge");
        PRPAIN201304UV02MFMIMT700701UV01Subject1 subject = new PRPAIN201304UV02MFMIMT700701UV01Subject1();
        controlActProcess.addSubject(subject);
        subject.setTypeCode("SUBJ");
        // ???
        subject.setContextConductionInd(false);
        PRPAIN201304UV02MFMIMT700701UV01RegistrationEvent registrationEvent = new PRPAIN201304UV02MFMIMT700701UV01RegistrationEvent();
        subject.setRegistrationEvent(registrationEvent);
        registrationEvent.setClassCode(ActClass.REG);
        registrationEvent.setMoodCode(ActMood.EVN);
        // ???
        registrationEvent.setStatusCode(new CS("active", null, null));
        List<MFMIMT700701UV01ReplacementOf> replacementOfList = new ArrayList<MFMIMT700701UV01ReplacementOf>();
        registrationEvent.setReplacementOf(replacementOfList);
        for (Patient replacedPatient : replaced) {
            MFMIMT700701UV01ReplacementOf replacementOf = new MFMIMT700701UV01ReplacementOf();
            MFMIMT700701UV01PriorRegistration priorRegistration = new MFMIMT700701UV01PriorRegistration();
            replacementOf.setPriorRegistration(priorRegistration);
            replacementOf.setTypeCode("RPLC");
            priorRegistration.setClassCode(ActClass.REG);
            priorRegistration.setMoodCode(ActMood.EVN);
            priorRegistration.setStatusCode(new CS("obsolete", null, null));
            MFMIMT700701UV01Subject3 subject1 = new MFMIMT700701UV01Subject3();
            priorRegistration.setSubject1(subject1);
            subject1.setTypeCode(ParticipationTargetSubject.SBJ);
            MFMIMT700701UV01PriorRegisteredRole priorRegisteredRole = new MFMIMT700701UV01PriorRegisteredRole();
            subject1.setPriorRegisteredRole(priorRegisteredRole);
            priorRegisteredRole.setClassCode("PAT");
            for (Identifier id : replacedPatient.getIdentifier()) {
                priorRegisteredRole.addId(patientIdentifier(id));
            }
            replacementOfList.add(replacementOf);
        }
        PRPAIN201304UV02MFMIMT700701UV01Subject2 subject1 = new PRPAIN201304UV02MFMIMT700701UV01Subject2();
        registrationEvent.setSubject1(subject1);
        subject1.setTypeCode(ParticipationTargetSubject.SBJ);
        PRPAMT201303UV02Patient patient = new PRPAMT201303UV02Patient();
        patient.setClassCode("PAT");
        subject1.setPatient(patient);
        PRPAMT201302UV02PatientStatusCode statusCode = new PRPAMT201302UV02PatientStatusCode("active", null, null);
        // ???
        patient.setStatusCode(statusCode);
        List<II> orgIds = new ArrayList<II>();
        Set<String> mainIds = new HashSet<String>();
        PRPAMT201303UV02Person patientPerson = new PRPAMT201303UV02Person();
        patientPerson.setClassCode(EntityClass.PSN);
        patientPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
        patient.setPatientPerson(patientPerson);
        Organization managingOrg = getManagingOrganization(in, basePatient.getContained());
        for (Identifier id : managingOrg.getIdentifier()) {
            orgIds.add(new II(getScheme(id.getSystem()), null));
            mainIds.add(id.getSystem());
        }
        if (managingOrg == null)
            managingOrg = getManagingOrganization(basePatient, basePatient.getContained());
        if (managingOrg == null)
            throw new InvalidRequestException("Cannot determine managingOrganization");
        // TODO How is the correct mapping done?
        for (Identifier id : in.getIdentifier()) {
            PRPAMT201302UV02PatientId patientId = new PRPAMT201302UV02PatientId(getScheme(id.getSystem()), id.getValue());
            patient.addId(patientId);
        }
        for (HumanName name : in.getName()) {
            patientPerson.addName(transform(name));
        }
        COCTMT150003UV03Organization providerOrganization = new COCTMT150003UV03Organization();
        patient.setProviderOrganization(providerOrganization);
        providerOrganization.setClassCode(EntityClassOrganization.ORG);
        providerOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
        providerOrganization.setId(orgIds);
        ON name = null;
        if (managingOrg.hasName()) {
            name = new ON();
            name.setMixed(Collections.singletonList(managingOrg.getName()));
            providerOrganization.setName(Collections.singletonList(name));
        }
        COCTMT150003UV03ContactParty contactParty = new COCTMT150003UV03ContactParty();
        contactParty.setClassCode(RoleClassContact.CON);
        for (ContactPoint contactPoint : managingOrg.getTelecom()) {
            contactParty.addTelecom(transform(contactPoint));
        }
        if (managingOrg.hasAddress())
            contactParty.setAddr(new ArrayList<AD>());
        for (Address address : managingOrg.getAddress()) {
            contactParty.addAddr(transform(address));
        }
        if (managingOrg.hasContact()) {
            OrganizationContactComponent occ = managingOrg.getContactFirstRep();
            COCTMT150003UV03Person contactPerson = new COCTMT150003UV03Person();
            contactPerson.setClassCode(EntityClass.PSN);
            contactPerson.setDeterminerCode(EntityDeterminer.INSTANCE);
            if (occ.hasName())
                contactPerson.setName(Collections.singletonList(transform(occ.getName())));
            contactParty.setContactPerson(contactPerson);
        }
        providerOrganization.setContactParty(Collections.singletonList(contactParty));
        patientPerson.setBirthTime(transform(in.getBirthDateElement()));
        if (in.hasGender()) {
            switch(in.getGender()) {
                case MALE:
                    patientPerson.setAdministrativeGenderCode(new CE("M", "Male", "2.16.840.1.113883.12.1"));
                    break;
                case FEMALE:
                    patientPerson.setAdministrativeGenderCode(new CE("F", "Female", "2.16.840.1.113883.12.1"));
                    break;
                case OTHER:
                    patientPerson.setAdministrativeGenderCode(new CE("A", "Ambiguous", "2.16.840.1.113883.12.1"));
                    break;
                case UNKNOWN:
                    patientPerson.setAdministrativeGenderCode(new CE("U", "Unknown", "2.16.840.1.113883.12.1"));
                    break;
            }
        }
        if (in.hasAddress())
            patientPerson.setAddr(new ArrayList<AD>());
        for (Address address : in.getAddress()) {
            patientPerson.addAddr(transform(address));
        }
        for (ContactPoint contactPoint : in.getTelecom()) {
            patientPerson.addTelecom(transform(contactPoint));
        }
        if (in.hasDeceasedBooleanType()) {
            patientPerson.setDeceasedInd(new BL(in.getDeceasedBooleanType().getValue()));
        }
        if (in.hasDeceasedDateTimeType()) {
            patientPerson.setDeceasedTime(transform(in.getDeceasedDateTimeType()));
        }
        if (in.hasMultipleBirthBooleanType()) {
            patientPerson.setMultipleBirthInd(new BL(in.getMultipleBirthBooleanType().getValue()));
        }
        if (in.hasMultipleBirthIntegerType()) {
            patientPerson.setMultipleBirthOrderNumber(new INT(in.getMultipleBirthIntegerType().getValue()));
        }
        if (in.hasMaritalStatus()) {
            patientPerson.setMaritalStatusCode(transform(in.getMaritalStatus()));
        }
        if (in.hasCommunication()) {
            for (PatientCommunicationComponent pcc : in.getCommunication()) {
                PRPAMT201303UV02LanguageCommunication languageCommunication = new PRPAMT201303UV02LanguageCommunication();
                languageCommunication.setLanguageCode(transform(pcc.getLanguage()));
                if (pcc.hasPreferred())
                    languageCommunication.setPreferenceInd(new BL(pcc.getPreferred()));
                patientPerson.addLanguageCommunication(languageCommunication);
            }
        }
        MFMIMT700701UV01Custodian custodian = new MFMIMT700701UV01Custodian();
        registrationEvent.setCustodian(custodian);
        custodian.setTypeCode(ParticipationType.CST);
        COCTMT090003UV01AssignedEntity assignedEntity = new COCTMT090003UV01AssignedEntity();
        custodian.setAssignedEntity(assignedEntity);
        assignedEntity.setClassCode(RoleClassAssignedEntity.ASSIGNED);
        List<II> custIds = new ArrayList<II>();
        custIds.add(new II(getScheme(config.getCustodianOid()), null));
        assignedEntity.setId(custIds);
        // assignedEntity.setId(orgIds);
        COCTMT090003UV01Organization assignedOrganization = new COCTMT090003UV01Organization();
        assignedEntity.setAssignedOrganization(assignedOrganization);
        assignedOrganization.setClassCode(EntityClassOrganization.ORG);
        assignedOrganization.setDeterminerCode(EntityDeterminer.INSTANCE);
        if (managingOrg.hasName()) {
            ON onName = new ON();
            onName.setMixed(Collections.singletonList(managingOrg.getName()));
            assignedOrganization.setName(Collections.singletonList(onName));
        }
    }
    ByteArrayOutputStream out = new ByteArrayOutputStream();
    HL7V3Transformer.marshallMessage(PRPAIN201304UV02Type.class, out, resultMsg);
    String outArray = new String(out.toByteArray());
    return outArray;
}