Examples with DiagnosticReport org.hl7.fhir.dstu3.model.DiagnosticReport used on opensource projects

Example 96 with DiagnosticReport

use of org.hl7.fhir.dstu3.model.DiagnosticReport in project fhir-bridge by ehrbase.

the class DiagnosticReportLabCompositionConverter method convertLaborergebnis.

private List<LaborergebnisObservation> convertLaborergebnis(DiagnosticReport diagnosticReport) {
    List<LaborergebnisObservation> laborergebnisObservationList = new ArrayList<>();
    for (Resource resource : diagnosticReport.getContained()) {
        if (resource.getResourceType() == ResourceType.Observation) {
            LaborergebnisObservation laborergebnisObservation = new LaborergebnisObservationConverter().convert((Observation) resource);
            injectSchlussfolgerung(laborergebnisObservation, diagnosticReport);
            laborergebnisObservationList.add(laborergebnisObservation);
        }
    }
    return laborergebnisObservationList;
}

Example 97 with DiagnosticReport

use of org.hl7.fhir.dstu3.model.DiagnosticReport in project fhir-bridge by ehrbase.

the class FindDiagnosticReportTransactionIT method findDiagnosticReportRead.

@Test
void findDiagnosticReportRead() throws IOException {
    MethodOutcome outcome = create("DiagnosticReport/transactions/provide-diagnostic-report-create.json");
    IIdType id = outcome.getId();
    DiagnosticReport diagnosticReport = read(id.getIdPart(), DiagnosticReport.class);
    Assertions.assertNotNull(diagnosticReport);
    Assertions.assertNotNull(diagnosticReport.getId(), id.getIdPart());
    Assertions.assertEquals(PATIENT_ID, diagnosticReport.getSubject().getIdentifier().getValue());
}

Example 98 with DiagnosticReport

use of org.hl7.fhir.dstu3.model.DiagnosticReport in project fhir-bridge by ehrbase.

the class FindDiagnosticReportTransactionIT method findDiagnosticReportVRead.

@Test
void findDiagnosticReportVRead() throws IOException {
    MethodOutcome outcome = create("DiagnosticReport/transactions/provide-diagnostic-report-create.json");
    IIdType id = outcome.getId();
    DiagnosticReport diagnosticReport = vread(id.getIdPart(), id.getVersionIdPart(), DiagnosticReport.class);
    Assertions.assertNotNull(diagnosticReport);
    Assertions.assertNotNull(diagnosticReport.getId(), id.getIdPart());
    Assertions.assertNotNull(diagnosticReport.getMeta().getVersionId(), id.getVersionIdPart());
    Assertions.assertEquals(PATIENT_ID, diagnosticReport.getSubject().getIdentifier().getValue());
}

Example 99 with DiagnosticReport

use of org.hl7.fhir.dstu3.model.DiagnosticReport in project fhir-bridge by ehrbase.

the class ProvideDiagnosticReportTransactionIT method provideDiagnosticReportConditionalUpdate.

@Test
void provideDiagnosticReportConditionalUpdate() throws IOException {
    MethodOutcome outcome;
    outcome = create("DiagnosticReport/transactions/provide-diagnostic-report-create.json");
    IIdType id = outcome.getId();
    outcome = update("DiagnosticReport/transactions/provide-diagnostic-report-update.json", "DiagnosticReport?_id=" + id.getIdPart() + "&subject.identifier=" + PATIENT_ID);
    Assertions.assertEquals(id.getIdPart(), outcome.getId().getIdPart());
    Assertions.assertEquals(id.getVersionIdPartAsLong() + 1, outcome.getId().getVersionIdPartAsLong());
    DiagnosticReport diagnosticReport = (DiagnosticReport) outcome.getResource();
    Assertions.assertEquals(PATIENT_ID, diagnosticReport.getSubject().getIdentifier().getValue());
    Assertions.assertEquals("http://external.fhir.server/ServiceRequest/987", diagnosticReport.getBasedOn().get(0).getReference());
    Assertions.assertEquals(DiagnosticReport.DiagnosticReportStatus.CORRECTED, diagnosticReport.getStatus());
}

Example 100 with DiagnosticReport

use of org.hl7.fhir.dstu3.model.DiagnosticReport in project odm2fhir by num-codex.

the class ImagingProcedures method map.

protected Stream<DomainResource> map(FormData formData) {
    var techniqueGroup = formData.getItemGroupData("bildgebung.bildgebende_verfahren_ct");
    var befundGroup = formData.getItemGroupData("bildgebung.befund_bildgebender_verfahren_ct");
    var generalCoding = formData.getItemData("bildgebende_verfahren");
    if (!"1".equals(generalCoding.getValue())) {
        return Stream.empty();
    }
    var itemDatas = Stream.of(techniqueGroup.getItemData(), befundGroup.getItemData()).flatMap(List::stream).collect(toMap(ItemData::getItemOID, identity()));
    return Stream.of("ct", "roentgen", "us").filter(type -> contains(itemDatas.get("bildgebende_verfahren_" + type).getValue(), "410605003")).filter(type -> !(itemDatas.get("befund_bildgebender_verfahren_" + type).isEmpty())).flatMap(type -> {
        var diagnosticReport = createDiagnosticReport(itemDatas.get("befund_bildgebender_verfahren_" + type));
        var procedure = createProcedure(itemDatas.get("bildgebende_verfahren_" + type)).addReport(new Reference(format("%s/%s", DIAGNOSTICREPORT.toCode(), diagnosticReport.getId())));
        return Stream.of(diagnosticReport, procedure);
    });
}