Examples with IBundleProvider ca.uhn.fhir.rest.api.server.IBundleProvider used on opensource projects

Example 1 with IBundleProvider

use of ca.uhn.fhir.rest.api.server.IBundleProvider in project cqf-ruler by DBCG.

the class CodeSystemUpdateProvider method updateCodeSystems.

/**
 * Update existing {@link CodeSystem CodeSystems} with the codes in all
 * {@link ValueSet ValueSet} resources.
 * System level CodeSystem update operation
 *
 * @return FHIR {@link OperationOutcome OperationOutcome} detailing the success
 *         or failure of the
 *         operation
 */
@Description(shortDefinition = "$updateCodeSystems", value = "Update existing CodeSystems with the codes in all ValueSet resources. System level CodeSystem update operation", example = "$updateCodeSystems")
@Operation(name = "$updateCodeSystems", idempotent = true)
public OperationOutcome updateCodeSystems() {
    IBundleProvider valuesets = this.myValueSetDaoDSTU3.search(SearchParameterMap.newSynchronous());
    List<ValueSet> valueSets = valuesets.getAllResources().stream().map(x -> (ValueSet) x).collect(Collectors.toList());
    OperationOutcome outcome = this.performCodeSystemUpdate(valueSets);
    OperationOutcome response = new OperationOutcome();
    if (outcome.hasIssue()) {
        for (OperationOutcome.OperationOutcomeIssueComponent issue : outcome.getIssue()) {
            response.addIssue(issue);
        }
    }
    return response;
}

Example 2 with IBundleProvider

use of ca.uhn.fhir.rest.api.server.IBundleProvider in project cqf-ruler by DBCG.

the class JpaTerminologyProvider method expand.

@Override
public Iterable<Code> expand(ValueSetInfo valueSet) throws ResourceNotFoundException {
    // This could possibly be refactored into a single call to the underlying HAPI
    // Terminology service. Need to think through that..,
    IBaseResource vs;
    if (hasUrlId(valueSet)) {
        if (hasVersion(valueSet) || hasVersionedCodeSystem(valueSet)) {
            throw new UnsupportedOperationException(String.format("Could not expand value set %s; version and code system bindings are not supported at this time.", valueSet.getId()));
        }
        IBundleProvider bundleProvider = search(getClass("ValueSet"), Searches.byUrl(valueSet.getId()), myRequestDetails);
        List<IBaseResource> valueSets = bundleProvider.getAllResources();
        if (valueSets.isEmpty()) {
            throw new IllegalArgumentException(String.format("Could not resolve value set %s.", valueSet.getId()));
        } else if (valueSets.size() == 1) {
            vs = valueSets.get(0);
        } else {
            throw new IllegalArgumentException("Found more than 1 ValueSet with url: " + valueSet.getId());
        }
    } else {
        vs = read(Ids.newId(this.myTerminologySvc.getFhirContext(), "ValueSet", valueSet.getId()), myRequestDetails);
        if (vs == null) {
            throw new IllegalArgumentException(String.format("Could not resolve value set %s.", valueSet.getId()));
        }
    }
    // relies heavily on reflection.
    switch(vs.getStructureFhirVersionEnum()) {
        case DSTU3:
            return getCodes((org.hl7.fhir.dstu3.model.ValueSet) vs);
        case R4:
            return getCodes((org.hl7.fhir.r4.model.ValueSet) vs);
        case R5:
            return getCodes((org.hl7.fhir.r5.model.ValueSet) vs);
        default:
            throw new IllegalArgumentException(String.format("expand does not support FHIR version %s", vs.getStructureFhirVersionEnum().getFhirVersionString()));
    }
}

Example 3 with IBundleProvider

use of ca.uhn.fhir.rest.api.server.IBundleProvider in project ipf by oehf.

the class Iti67ResourceProvider method documentReferenceSearch.

@SuppressWarnings("unused")
@Search(type = DocumentReference.class)
public IBundleProvider documentReferenceSearch(@RequiredParam(name = DocumentReference.SP_PATIENT, chainWhitelist = { "", Patient.SP_IDENTIFIER }) ReferenceParam patient, @OptionalParam(name = DocumentReference.SP_STATUS) TokenOrListParam status, @OptionalParam(name = DocumentReference.SP_IDENTIFIER) TokenParam identifier, @OptionalParam(name = DocumentReference.SP_DATE) DateRangeParam date, @OptionalParam(name = STU3_INDEXED) DateRangeParam indexed, @OptionalParam(name = DocumentReference.SP_AUTHOR, chainWhitelist = { Practitioner.SP_FAMILY, Practitioner.SP_GIVEN }) ReferenceAndListParam author, @OptionalParam(name = DocumentReference.SP_CATEGORY) TokenOrListParam category, @OptionalParam(name = STU3_CLASS) TokenOrListParam class_, @OptionalParam(name = DocumentReference.SP_TYPE) TokenOrListParam type, @OptionalParam(name = DocumentReference.SP_SETTING) TokenOrListParam setting, @OptionalParam(name = DocumentReference.SP_PERIOD) DateRangeParam period, @OptionalParam(name = DocumentReference.SP_FACILITY) TokenOrListParam facility, @OptionalParam(name = DocumentReference.SP_EVENT) TokenOrListParam event, @OptionalParam(name = DocumentReference.SP_SECURITY_LABEL) TokenOrListParam securityLabel, @OptionalParam(name = STU3_SECURITY_LABEL) TokenOrListParam label, @OptionalParam(name = DocumentReference.SP_FORMAT) TokenOrListParam format, @OptionalParam(name = DocumentReference.SP_RELATED, chainWhitelist = { "", DocumentReference.SP_IDENTIFIER }) ReferenceOrListParam related, // -> related.identifier
@OptionalParam(name = STU3_RELATED_ID) TokenOrListParam relatedId, // -> related
@OptionalParam(name = STU3_RELATED_REF) ReferenceOrListParam relatedRef, // Extension to ITI-67
@OptionalParam(name = IAnyResource.SP_RES_ID) TokenParam resourceId, @Sort SortSpec sortSpec, @IncludeParam Set<Include> includeSpec, RequestDetails requestDetails, HttpServletRequest httpServletRequest, HttpServletResponse httpServletResponse) {
    // Be graceful and accept STU3 parameters as well
    var dateParam = date != null ? date : indexed;
    var categoryParam = category != null ? category : class_;
    var securityLabelParam = securityLabel != null ? securityLabel : label;
    // Handle "related" parameters
    ReferenceOrListParam relatedParam = new ReferenceOrListParam();
    TokenOrListParam relatedIdParam = new TokenOrListParam();
    if (relatedRef != null) {
        relatedParam = relatedRef;
    } else if (relatedId != null) {
        relatedIdParam = relatedId;
    } else if (related != null) {
        related.getValuesAsQueryTokens().stream().filter(referenceParam -> !DocumentReference.SP_IDENTIFIER.equals(referenceParam.getChain())).forEach(relatedParam::addOr);
        related.getValuesAsQueryTokens().stream().filter(referenceParam -> DocumentReference.SP_IDENTIFIER.equals(referenceParam.getChain())).map(referenceParam -> referenceParam.toTokenParam(getFhirContext())).forEach(relatedIdParam::addOr);
    }
    var searchParameters = Iti67SearchParameters.builder().status(status).identifier(identifier).date(dateParam).category(categoryParam).type(type).setting(setting).period(period).facility(facility).event(event).securityLabel(securityLabelParam).format(format).related(relatedParam).relatedId(relatedIdParam)._id(resourceId).sortSpec(sortSpec).includeSpec(includeSpec).fhirContext(getFhirContext()).build();
    searchParameters.setAuthor(author);
    var patientChain = patient.getChain();
    if (Patient.SP_IDENTIFIER.equals(patientChain)) {
        searchParameters.setPatientIdentifier(patient.toTokenParam(getFhirContext()));
    } else if (patientChain == null || patientChain.isEmpty()) {
        searchParameters.setPatientReference(patient);
    }
    // Run down the route
    return requestBundleProvider(null, searchParameters, ResourceType.DocumentReference.name(), httpServletRequest, httpServletResponse, requestDetails);
}

Example 4 with IBundleProvider

use of ca.uhn.fhir.rest.api.server.IBundleProvider in project hapi-fhir-jpaserver-starter by hapifhir.

the class RepositoryValidationInterceptorFactoryR5 method buildUsingStoredStructureDefinitions.

public RepositoryValidatingInterceptor buildUsingStoredStructureDefinitions() {
    IBundleProvider results = structureDefinitionResourceProvider.search(new SearchParameterMap().add(StructureDefinition.SP_KIND, new TokenParam("resource")));
    Map<String, List<StructureDefinition>> structureDefintions = results.getResources(0, results.size()).stream().map(StructureDefinition.class::cast).collect(Collectors.groupingBy(StructureDefinition::getType));
    structureDefintions.entrySet().forEach(structureDefinitionListEntry -> {
        String[] urls = structureDefinitionListEntry.getValue().stream().map(StructureDefinition::getUrl).toArray(String[]::new);
        repositoryValidatingRuleBuilder.forResourcesOfType(structureDefinitionListEntry.getKey()).requireAtLeastOneProfileOf(urls).and().requireValidationToDeclaredProfiles();
    });
    List<IRepositoryValidatingRule> rules = repositoryValidatingRuleBuilder.build();
    return new RepositoryValidatingInterceptor(fhirContext, rules);
}

Example 5 with IBundleProvider

use of ca.uhn.fhir.rest.api.server.IBundleProvider in project openmrs-module-fhir2 by openmrs.

the class ConditionSearchQueryTest method searchForObsConditions_shouldSearchForConditionsByMultiplePatientGivenNameOr.

@Test
public void searchForObsConditions_shouldSearchForConditionsByMultiplePatientGivenNameOr() {
    ReferenceAndListParam referenceParam = new ReferenceAndListParam();
    ReferenceParam patient = new ReferenceParam();
    patient.setValue(PATIENT_GIVEN_NAME);
    patient.setChain(Patient.SP_GIVEN);
    ReferenceParam badPatient = new ReferenceParam();
    badPatient.setValue(PATIENT_WRONG_GIVEN_NAME);
    badPatient.setChain(Patient.SP_GIVEN);
    referenceParam.addValue(new ReferenceOrListParam().add(patient).add(badPatient));
    SearchParameterMap theParams = new SearchParameterMap().addParameter(FhirConstants.PATIENT_REFERENCE_SEARCH_HANDLER, referenceParam);
    IBundleProvider results = search(theParams);
    List<IBaseResource> resultList = get(results);
    assertThat(results, notNullValue());
    assertThat(resultList, not(empty()));
    assertEquals(resultList.size(), 2);
}