use of org.hl7.fhir.r4.model.Practitioner in project gpconnect-demonstrator by nhsconnect.
the class MedicationAdministrationResourceProvider method getMedicationAdministrationsForPatientId.
@Search
public List<MedicationAdministration> getMedicationAdministrationsForPatientId(@RequiredParam(name = "patient") String patientId) {
ArrayList<MedicationAdministration> medicationAdministrations = new ArrayList<>();
List<MedicationAdministrationDetail> medicationAdministrationDetailList = medicationAdministrationSearch.findMedicationAdministrationForPatient(Long.parseLong(patientId));
if (medicationAdministrationDetailList != null && !medicationAdministrationDetailList.isEmpty()) {
for (MedicationAdministrationDetail medicationAdministrationDetail : medicationAdministrationDetailList) {
MedicationAdministration medicationAdministration = new MedicationAdministration();
String resourceId = String.valueOf(medicationAdministrationDetail.getId());
String versionId = String.valueOf(medicationAdministrationDetail.getLastUpdated().getTime());
String resourceType = medicationAdministration.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
medicationAdministration.setId(id);
medicationAdministration.getMeta().setVersionId(versionId);
medicationAdministration.getMeta().setLastUpdated(medicationAdministrationDetail.getLastUpdated());
medicationAdministration.addDefinition(new Reference("Patient/" + medicationAdministrationDetail.getPatientId()));
medicationAdministration.addDefinition(new Reference("Practitioner/" + medicationAdministrationDetail.getPractitionerId()));
medicationAdministration.setPrescription(new Reference("MedicationOrder/" + medicationAdministrationDetail.getPrescriptionId()));
medicationAdministration.setEffective(new DateType(medicationAdministrationDetail.getAdministrationDate()));
medicationAdministration.setMedication(new Reference("Medication/" + medicationAdministrationDetail.getMedicationId()));
medicationAdministrations.add(medicationAdministration);
}
}
return medicationAdministrations;
}
use of org.hl7.fhir.r4.model.Practitioner in project gpconnect-demonstrator by nhsconnect.
the class MedicationOrderResourceProvider method medicationOrderDetailsToMedicationOrderResourceConverter.
private MedicationRequest medicationOrderDetailsToMedicationOrderResourceConverter(MedicationOrderDetails medicationOrderDetails) {
MedicationRequest medicationOrder = new MedicationRequest();
String resourceId = String.valueOf(medicationOrderDetails.getId());
String versionId = String.valueOf(medicationOrderDetails.getLastUpdated().getTime());
String resourceType = medicationOrder.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
medicationOrder.setId(id);
medicationOrder.getMeta().setVersionId(versionId);
medicationOrder.getMeta().setLastUpdated(medicationOrderDetails.getLastUpdated());
switch(medicationOrderDetails.getOrderStatus().toLowerCase(Locale.UK)) {
case "active":
medicationOrder.setStatus(MedicationRequestStatus.ACTIVE);
break;
case "completed":
medicationOrder.setStatus(MedicationRequestStatus.COMPLETED);
break;
case "draft":
medicationOrder.setStatus(MedicationRequestStatus.DRAFT);
break;
case "entered_in_error":
medicationOrder.setStatus(MedicationRequestStatus.ENTEREDINERROR);
break;
case "on_hold":
medicationOrder.setStatus(MedicationRequestStatus.ONHOLD);
break;
case "stopped":
medicationOrder.setStatus(MedicationRequestStatus.STOPPED);
break;
}
if (medicationOrderDetails.getPatientId() != null) {
medicationOrder.setSubject(new Reference("Patient/" + medicationOrderDetails.getPatientId()));
} else {
medicationOrder.setSubject(new Reference());
}
medicationOrder.setRecorder(new Reference("Practitioner/" + medicationOrderDetails.getAutherId()));
medicationOrder.setMedication(new Reference("Medication/" + medicationOrderDetails.getMedicationId()));
medicationOrder.addDosageInstruction().setText(medicationOrderDetails.getDosageText());
MedicationRequestDispenseRequestComponent dispenseRequest = new MedicationRequestDispenseRequestComponent();
dispenseRequest.addExtension(new Extension(SystemURL.SD_EXTENSION_MEDICATION_QUANTITY_TEXT, new StringDt(medicationOrderDetails.getDispenseQuantityText())));
dispenseRequest.addExtension(new Extension(SystemURL.SD_EXTENSION_PERSCRIPTION_REPEAT_REVIEW_DATE, new DateTimeDt(medicationOrderDetails.getDispenseReviewDate())));
dispenseRequest.setId("Medication/" + medicationOrderDetails.getDispenseMedicationId());
dispenseRequest.setNumberOfRepeatsAllowed(medicationOrderDetails.getDispenseRepeatsAllowed());
medicationOrder.setDispenseRequest(dispenseRequest);
return medicationOrder;
}
use of org.hl7.fhir.r4.model.Practitioner in project gpconnect-demonstrator by nhsconnect.
the class PractitionerResourceProvider method practitionerDetailsToPractitionerResourceConverter.
private Practitioner practitionerDetailsToPractitionerResourceConverter(PractitionerDetails practitionerDetails) {
Identifier identifier = new Identifier().setSystem(SystemURL.ID_SDS_USER_ID).setValue(practitionerDetails.getUserId());
Practitioner practitioner = new Practitioner().addIdentifier(identifier);
practitionerDetails.getRoleIds().stream().distinct().map(roleId -> new Identifier().setSystem(SystemURL.ID_SDS_ROLE_PROFILE_ID).setValue(roleId)).forEach(practitioner::addIdentifier);
String resourceId = String.valueOf(practitionerDetails.getId());
String versionId = String.valueOf(practitionerDetails.getLastUpdated().getTime());
String resourceType = practitioner.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
practitioner.setId(id);
practitioner.getMeta().setVersionId(versionId);
practitioner.getMeta().setLastUpdated(practitionerDetails.getLastUpdated());
practitioner.getMeta().addProfile(SystemURL.SD_GPC_PRACTITIONER);
HumanName name = new HumanName().setFamily(practitionerDetails.getNameFamily()).addGiven(practitionerDetails.getNameGiven()).addPrefix(practitionerDetails.getNamePrefix()).setUse(NameUse.USUAL);
practitioner.addName(name);
switch(practitionerDetails.getGender().toLowerCase(Locale.UK)) {
case "male":
practitioner.setGender(AdministrativeGender.MALE);
break;
case "female":
practitioner.setGender(AdministrativeGender.FEMALE);
break;
case "other":
practitioner.setGender(AdministrativeGender.OTHER);
break;
default:
practitioner.setGender(AdministrativeGender.UNKNOWN);
break;
}
Coding roleCoding = new Coding(SystemURL.VS_SDS_JOB_ROLE_NAME, practitionerDetails.getRoleCode(), practitionerDetails.getRoleDisplay());
for (int i = 0; i < practitionerDetails.getComCode().size(); i++) {
Coding comCoding = new Coding(SystemURL.VS_HUMAN_LANGUAGE, practitionerDetails.getComCode().get(i), null).setDisplay(practitionerDetails.getComDisplay().get(i));
practitioner.addCommunication().addCoding(comCoding);
}
return practitioner;
}
use of org.hl7.fhir.r4.model.Practitioner in project gpconnect-demonstrator by nhsconnect.
the class AppointmentResourceProvider method appointmentResourceConverterToAppointmentDetail.
/**
* fhir resource Appointment to AppointmentDetail
*
* @param appointment Resource
* @return populated AppointmentDetail
*/
private AppointmentDetail appointmentResourceConverterToAppointmentDetail(Appointment appointment) {
appointmentValidation.validateAppointmentExtensions(appointment.getExtension());
if (appointmentValidation.appointmentDescriptionTooLong(appointment)) {
throwUnprocessableEntity422_InvalidResourceException("Appointment description cannot be greater then " + APPOINTMENT_DESCRIPTION_LENGTH + " characters");
}
AppointmentDetail appointmentDetail = new AppointmentDetail();
Long id = appointment.getIdElement().getIdPartAsLong();
appointmentDetail.setId(id);
appointmentDetail.setLastUpdated(getLastUpdated(appointment.getMeta().getLastUpdated()));
List<Extension> cnlExtension = appointment.getExtensionsByUrl(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON);
if (cnlExtension != null && !cnlExtension.isEmpty()) {
IBaseDatatype value = cnlExtension.get(0).getValue();
if (null == value) {
throwInvalidRequest400_BadRequestException("Cancellation reason missing.");
}
appointmentDetail.setCancellationReason(value.toString());
}
appointmentDetail.setStatus(appointment.getStatus().toString().toLowerCase(Locale.UK));
appointmentDetail.setMinutesDuration(appointment.getMinutesDuration());
appointmentDetail.setPriority(appointment.getPriority());
appointmentDetail.setStartDateTime(appointment.getStart());
appointmentDetail.setEndDateTime(appointment.getEnd());
List<Long> slotIds = new ArrayList<>();
for (Reference slotReference : appointment.getSlot()) {
// #200 check slots for absolute references
checkReferenceIsRelative(slotReference.getReference());
try {
String here = slotReference.getReference().substring("Slot/".length());
Long slotId = new Long(here);
slotIds.add(slotId);
} catch (NumberFormatException ex) {
throwUnprocessableEntity422_InvalidResourceException(String.format("The slot reference value data type for %s is not valid.", slotReference.getReference()));
}
}
appointmentDetail.setSlotIds(slotIds);
if (appointmentValidation.appointmentCommentTooLong(appointment)) {
throwUnprocessableEntity422_InvalidResourceException("Appointment comment cannot be greater than " + APPOINTMENT_COMMENT_LENGTH + " characters");
}
appointmentDetail.setComment(appointment.getComment());
appointmentDetail.setDescription(appointment.getDescription());
for (AppointmentParticipantComponent participant : appointment.getParticipant()) {
if (participant.getActor() != null) {
String participantReference = participant.getActor().getReference();
String actorIdString = participantReference.substring(participantReference.lastIndexOf("/") + 1);
Long actorId;
if (actorIdString.equals("null")) {
actorId = null;
} else {
actorId = Long.valueOf(actorIdString);
}
if (participantReference.contains("Patient/")) {
appointmentDetail.setPatientId(actorId);
} else if (participantReference.contains("Practitioner/")) {
appointmentDetail.setPractitionerId(actorId);
} else if (participantReference.contains("Location/")) {
appointmentDetail.setLocationId(actorId);
}
} else {
throwUnprocessableEntity422_InvalidResourceException("Participant Actor cannot be null");
}
}
if (appointment.getCreated() != null) {
Date created = appointment.getCreated();
appointmentDetail.setCreated(created);
}
// #200 check extensions for absolute references
List<Extension> extensions = appointment.getExtension();
for (Extension extension : extensions) {
try {
Reference reference = (Reference) extension.getValue();
if (reference != null) {
checkReferenceIsRelative(reference.getReference());
}
} catch (ClassCastException ex) {
}
}
List<Resource> contained = appointment.getContained();
if (contained != null && !contained.isEmpty()) {
Resource org = contained.get(0);
Organization bookingOrgRes = (Organization) org;
BookingOrgDetail bookingOrgDetail = new BookingOrgDetail();
appointmentValidation.validateBookingOrganizationValuesArePresent(bookingOrgRes);
bookingOrgDetail.setName(bookingOrgRes.getName());
// #198 add system and optional use type. Pick system phone if > 1 and available otherwise use the one supplied
Iterator<ContactPoint> iter = bookingOrgRes.getTelecom().iterator();
ContactPoint telecom = bookingOrgRes.getTelecomFirstRep();
while (iter.hasNext()) {
ContactPoint thisTelecom = iter.next();
if (thisTelecom.getSystem() == ContactPoint.ContactPointSystem.PHONE) {
telecom = thisTelecom;
break;
}
}
bookingOrgDetail.setTelephone(telecom.getValue());
bookingOrgDetail.setSystem(telecom.getSystem().toString());
if (telecom.getUse() != null && !telecom.getUse().toString().trim().isEmpty()) {
bookingOrgDetail.setUsetype(telecom.getUse().toString());
}
if (!bookingOrgRes.getIdentifier().isEmpty()) {
bookingOrgDetail.setOrgCode(bookingOrgRes.getIdentifierFirstRep().getValue());
String system = bookingOrgRes.getIdentifierFirstRep().getSystem();
// check that organization identifier system is https://fhir.nhs.uk/Id/ods-organization-code
if (system != null && !system.trim().isEmpty()) {
if (!system.equals(ID_ODS_ORGANIZATION_CODE)) {
throwUnprocessableEntity422_InvalidResourceException("Appointment organisation identifier system must be an ODS code!");
}
} else {
throwUnprocessableEntity422_InvalidResourceException("Appointment organisation identifier system must be populated!");
}
}
bookingOrgDetail.setAppointmentDetail(appointmentDetail);
appointmentDetail.setBookingOrganization(bookingOrgDetail);
// 1.2.7
appointmentDetail.setServiceCategory(appointment.getServiceCategory().getText());
appointmentDetail.setServiceType(appointment.getServiceTypeFirstRep().getText());
}
return appointmentDetail;
}
use of org.hl7.fhir.r4.model.Practitioner in project gpconnect-demonstrator by nhsconnect.
the class AppointmentResourceProvider method updateAppointment.
/**
* amend or cancel an existing appointment
*
* @param appointmentId
* @param appointment Resource
* @param theRequest required to access the interaction id
* @return MethodOutcome
*/
@Update
public MethodOutcome updateAppointment(@IdParam IdType appointmentId, @ResourceParam Appointment appointment, HttpServletRequest theRequest) {
MethodOutcome methodOutcome = new MethodOutcome();
OperationOutcome operationalOutcome = new OperationOutcome();
AppointmentDetail appointmentDetail = appointmentResourceConverterToAppointmentDetail(appointment);
Meta meta = appointment.getMeta();
final List<UriType> profiles = meta.getProfile();
// #203 validations
VC.execute(new VC[] { new VC(() -> profiles.isEmpty(), () -> "Meta element must be present in Appointment"), new VC(() -> !profiles.get(0).getValue().equalsIgnoreCase(SD_GPC_APPOINTMENT), // what to do if > 1 meta profile element?
() -> "Meta.profile " + profiles.get(0).getValue() + " is not equal to " + SD_GPC_APPOINTMENT), // #203
new VC(() -> !appointment.getReason().isEmpty(), () -> "Appointment reason shouldn't be provided!"), new VC(() -> !appointment.getSpecialty().isEmpty(), () -> "Appointment speciality shouldn't be provided!"), // new VC(() -> !appointment.getServiceType().isEmpty(), () -> "Appointment service type shouldn't be provided!"),
new VC(() -> !appointment.getAppointmentType().isEmpty(), () -> "Appointment type shouldn't be provided!"), new VC(() -> !appointment.getIndication().isEmpty(), () -> "Appointment indication shouldn't be provided!"), new VC(() -> !appointment.getSupportingInformation().isEmpty(), () -> "Appointment supporting information shouldn't be provided!"), new VC(() -> !appointment.getIncomingReferral().isEmpty(), () -> "Appointment incoming referral shouldn't be provided!") });
// URL ID and Resource ID must be the same
if (!Objects.equals(appointmentId.getIdPartAsLong(), appointmentDetail.getId())) {
operationalOutcome.addIssue().setSeverity(IssueSeverity.ERROR).setDiagnostics("Id in URL (" + appointmentId.getIdPart() + ") should match Id in Resource (" + appointmentDetail.getId() + ")");
methodOutcome.setOperationOutcome(operationalOutcome);
return methodOutcome;
}
// Make sure there is an existing appointment to be amended
AppointmentDetail oldAppointmentDetail = appointmentSearch.findAppointmentByID(appointmentId.getIdPartAsLong());
if (oldAppointmentDetail == null) {
operationalOutcome.addIssue().setSeverity(IssueSeverity.ERROR).setDiagnostics("No appointment details found for ID: " + appointmentId.getIdPart());
methodOutcome.setOperationOutcome(operationalOutcome);
return methodOutcome;
}
// 1.2.7 set the old service type and service category for comparison with incoming update/cancel content values
SlotDetail slotDetail1 = slotSearch.findSlotByID(oldAppointmentDetail.getSlotIds().get(0));
oldAppointmentDetail.setServiceType(slotDetail1.getTypeDisply());
ScheduleDetail scheduleDetail = scheduleSearch.findScheduleByID(slotDetail1.getScheduleReference());
oldAppointmentDetail.setServiceCategory(scheduleDetail.getTypeDescription());
String oldAppointmentVersionId = String.valueOf(oldAppointmentDetail.getLastUpdated().getTime());
String newAppointmentVersionId = appointmentId.getVersionIdPart();
if (newAppointmentVersionId != null && !newAppointmentVersionId.equalsIgnoreCase(oldAppointmentVersionId)) {
throw new ResourceVersionConflictException("The specified version (" + newAppointmentVersionId + ") did not match the current resource version (" + oldAppointmentVersionId + ")");
}
// check for absolute reference #200
Iterator<AppointmentParticipantComponent> iter = appointment.getParticipant().iterator();
while (iter.hasNext()) {
AppointmentParticipantComponent participant = iter.next();
if (participant.getActor() != null) {
checkReferenceIsRelative(participant.getActor().getReference());
}
}
String interactionId = theRequest.getHeader(SSP_INTERACTIONID);
// Determine if it is a cancel or an amend. This was previously a check for the presence of a cancellation reason
// but that is not sufficient. We can sefely assume that the interaction id is populated at this point.
AppointmentOperation appointmentOperation = null;
final AppointmentDetail fAppointmentDetail = appointmentDetail;
switch(interactionId) {
case REST_CANCEL_APPOINTMENT:
appointmentOperation = AppointmentOperation.CANCEL;
// added at 1.2.2
VC.execute(new VC[] { new VC(() -> appointment.getStatus() != AppointmentStatus.CANCELLED, () -> "Status must be \"cancelled\""), // #203
new VC(() -> isInThePast(fAppointmentDetail.getStartDateTime()), () -> "The cancellation start date cannot be in the past"), new VC(() -> fAppointmentDetail.getCancellationReason() == null, () -> "The cancellation reason must be provided"), // no point in this since fhir forbids empty elements
new VC(() -> fAppointmentDetail.getCancellationReason().isEmpty(), () -> "The cancellation reason can not be blank") });
validateAppointmentExtensions(appointment, profiles, appointmentOperation);
// #172
String appointmentType = appointment.getAppointmentType().getText();
if (appointmentType != null) {
throwUnprocessableEntity422_InvalidResourceException("The appointment type cannot be updated on a cancellation");
}
// This is a Cancellation - so copy across fields which can be
// altered
List cancelComparisonResult = compareAppointmentsForInvalidProperty(AppointmentOperation.CANCEL, oldAppointmentDetail, appointmentDetail);
if (cancelComparisonResult.size() > 0) {
throwUnprocessableEntity422_InvalidResourceException("Invalid Appointment property has been amended (cancellation) " + cancelComparisonResult);
}
oldAppointmentDetail.setCancellationReason(appointmentDetail.getCancellationReason());
String oldStatus = oldAppointmentDetail.getStatus();
appointmentDetail = oldAppointmentDetail;
appointmentDetail.setStatus("cancelled");
if (!"cancelled".equalsIgnoreCase(oldStatus)) {
for (Long slotId : appointmentDetail.getSlotIds()) {
SlotDetail slotDetail = slotSearch.findSlotByID(slotId);
// slotDetail.setAppointmentId(null);
slotDetail.setFreeBusyType("FREE");
slotDetail.setLastUpdated(new Date());
slotStore.saveSlot(slotDetail);
}
}
break;
case REST_UPDATE_APPOINTMENT:
appointmentOperation = AppointmentOperation.AMEND;
VC.execute(new VC[] { new VC(() -> appointment.getStatus() != AppointmentStatus.BOOKED, () -> "Status must be \"booked\""), // this subsumes #161 which only inhibited amendment of the cancellation reason in an amend
new VC(() -> fAppointmentDetail.getCancellationReason() != null, () -> "Cannot amend cancellation reason in appointment amend"), // added at 1.2.2
new VC(() -> isInThePast(fAppointmentDetail.getStartDateTime()), () -> "The appointment amend start date cannot be in the past") });
List amendComparisonResult = compareAppointmentsForInvalidProperty(AppointmentOperation.AMEND, oldAppointmentDetail, appointmentDetail);
if (amendComparisonResult.size() > 0) {
throwUnprocessableEntity422_InvalidResourceException("Invalid Appointment property has been amended " + amendComparisonResult);
}
validateAppointmentExtensions(appointment, profiles, appointmentOperation);
// This is an Amend
oldAppointmentDetail.setComment(appointmentDetail.getComment());
oldAppointmentDetail.setDescription(appointmentDetail.getDescription());
appointmentDetail = oldAppointmentDetail;
break;
default:
System.err.println("AppointmentResourceProvider.updateAppointment Unhandled interaction id " + interactionId);
}
// we'll get the delivery channel from the slot
String deliveryChannel = null;
String practitionerRoleCode = null;
String practitionerRoleDisplay = null;
ScheduleDetail schedule = null;
// Common to both Update and cancel
// slots valid?
List<SlotDetail> slots = new ArrayList<>();
for (Long slotId : appointmentDetail.getSlotIds()) {
SlotDetail slotDetail = slotSearch.findSlotByID(slotId);
if (slotDetail == null) {
throwUnprocessableEntity422_InvalidResourceException("Slot resource reference is not a valid resource");
}
if (deliveryChannel == null) {
deliveryChannel = slotDetail.getDeliveryChannelCode();
}
if (schedule == null) {
// load the schedule so we can get the Practitioner ID
schedule = scheduleSearch.findScheduleByID(slotDetail.getScheduleReference());
}
if (practitionerRoleDisplay == null) {
practitionerRoleDisplay = schedule.getPractitionerRoleDisplay();
practitionerRoleCode = schedule.getPractitionerRoleCode();
}
slots.add(slotDetail);
}
validateUpdateExtensions(deliveryChannel, practitionerRoleDisplay, practitionerRoleCode, appointment.getExtension());
// dates valid?
// #203
Date firstSlotStart = slots.get(0).getStartDateTime();
Date lastSlotEnd = slots.get(slots.size() - 1).getEndDateTime();
// need to insert a colon in the timezone string
String firstSlotStartStr = TIMESTAMP_FORMAT.format(firstSlotStart).replaceFirst("([0-9]{2})([0-9]{2})$", "$1:$2");
String lastSlotEndStr = TIMESTAMP_FORMAT.format(lastSlotEnd).replaceFirst("([0-9]{2})([0-9]{2})$", "$1:$2");
VC.execute(new VC[] { new VC(() -> appointment.getStart().compareTo(firstSlotStart) != 0, () -> String.format("Start date '%s' must match start date of first slot '%s'", appointment.getStart(), firstSlotStart)), new VC(() -> appointment.getEnd().compareTo(lastSlotEnd) != 0, () -> String.format("End date '%s' must match end date of last slot '%s'", appointment.getEnd(), lastSlotEnd)), // #218 strings should match exactly
new VC(() -> !appointment.getStartElement().getValueAsString().equals(firstSlotStartStr), () -> String.format("Start date '%s' must lexically match start date of first slot '%s'", appointment.getStartElement().getValueAsString(), firstSlotStartStr)), new VC(() -> !appointment.getEndElement().getValueAsString().equals(lastSlotEndStr), () -> String.format("End date '%s' must lexically match end date of last slot '%s'", appointment.getEndElement().getValueAsString(), lastSlotEndStr)), new VC(() -> appointment.getSlot().size() != slots.size(), () -> String.format("Slot count mismatch %d provided appointment has %d", appointment.getSlot().size(), slots.size())) });
// check the slots match
HashSet<String> hs = new HashSet<>();
for (SlotDetail slotDetail : slots) {
hs.add("Slot/" + slotDetail.getId());
}
for (Reference reference : appointment.getSlot()) {
if (!hs.contains(reference.getReference())) {
throwUnprocessableEntity422_InvalidResourceException(String.format("Provided slot id %s does not exist in booked appointment", reference.getReference()));
}
}
// Update version and
appointmentDetail.setLastUpdated(new Date());
// lastUpdated timestamp
appointmentDetail = appointmentStore.saveAppointment(appointmentDetail, slots);
methodOutcome.setId(new IdDt("Appointment", appointmentDetail.getId()));
methodOutcome.setResource(appointmentDetailToAppointmentResourceConverter(appointmentDetail));
return methodOutcome;
}
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