use of org.hl7.fhir.dstu3.model.Extension in project gpconnect-demonstrator by nhsconnect.
the class MedicationOrderResourceProvider method medicationOrderDetailsToMedicationOrderResourceConverter.
private MedicationRequest medicationOrderDetailsToMedicationOrderResourceConverter(MedicationOrderDetails medicationOrderDetails) {
MedicationRequest medicationOrder = new MedicationRequest();
String resourceId = String.valueOf(medicationOrderDetails.getId());
String versionId = String.valueOf(medicationOrderDetails.getLastUpdated().getTime());
String resourceType = medicationOrder.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
medicationOrder.setId(id);
medicationOrder.getMeta().setVersionId(versionId);
medicationOrder.getMeta().setLastUpdated(medicationOrderDetails.getLastUpdated());
switch(medicationOrderDetails.getOrderStatus().toLowerCase(Locale.UK)) {
case "active":
medicationOrder.setStatus(MedicationRequestStatus.ACTIVE);
break;
case "completed":
medicationOrder.setStatus(MedicationRequestStatus.COMPLETED);
break;
case "draft":
medicationOrder.setStatus(MedicationRequestStatus.DRAFT);
break;
case "entered_in_error":
medicationOrder.setStatus(MedicationRequestStatus.ENTEREDINERROR);
break;
case "on_hold":
medicationOrder.setStatus(MedicationRequestStatus.ONHOLD);
break;
case "stopped":
medicationOrder.setStatus(MedicationRequestStatus.STOPPED);
break;
}
if (medicationOrderDetails.getPatientId() != null) {
medicationOrder.setSubject(new Reference("Patient/" + medicationOrderDetails.getPatientId()));
} else {
medicationOrder.setSubject(new Reference());
}
medicationOrder.setRecorder(new Reference("Practitioner/" + medicationOrderDetails.getAutherId()));
medicationOrder.setMedication(new Reference("Medication/" + medicationOrderDetails.getMedicationId()));
medicationOrder.addDosageInstruction().setText(medicationOrderDetails.getDosageText());
MedicationRequestDispenseRequestComponent dispenseRequest = new MedicationRequestDispenseRequestComponent();
dispenseRequest.addExtension(new Extension(SystemURL.SD_EXTENSION_MEDICATION_QUANTITY_TEXT, new StringDt(medicationOrderDetails.getDispenseQuantityText())));
dispenseRequest.addExtension(new Extension(SystemURL.SD_EXTENSION_PERSCRIPTION_REPEAT_REVIEW_DATE, new DateTimeDt(medicationOrderDetails.getDispenseReviewDate())));
dispenseRequest.setId("Medication/" + medicationOrderDetails.getDispenseMedicationId());
dispenseRequest.setNumberOfRepeatsAllowed(medicationOrderDetails.getDispenseRepeatsAllowed());
medicationOrder.setDispenseRequest(dispenseRequest);
return medicationOrder;
}
use of org.hl7.fhir.dstu3.model.Extension in project gpconnect-demonstrator by nhsconnect.
the class PatientResourceProvider method setStaticPatientData.
private Patient setStaticPatientData(Patient patient) {
patient.setLanguage(("en-GB"));
patient.addExtension(createCodingExtension("CG", "Greek Cypriot", SystemURL.CS_CC_ETHNIC_CATEGORY, SystemURL.SD_CC_EXT_ETHNIC_CATEGORY));
patient.addExtension(createCodingExtension("SomeSnomedCode", "Some Snomed Code", SystemURL.CS_CC_RELIGIOUS_AFFILI, SystemURL.SD_CC_EXT_RELIGIOUS_AFFILI));
patient.addExtension(new Extension(SystemURL.SD_PATIENT_CADAVERIC_DON, new BooleanType(false)));
patient.addExtension(createCodingExtension("H", "UK Resident", SystemURL.CS_CC_RESIDENTIAL_STATUS, SystemURL.SD_CC_EXT_RESIDENTIAL_STATUS));
patient.addExtension(createCodingExtension("3", "To pay hotel fees only", SystemURL.CS_CC_TREATMENT_CAT, SystemURL.SD_CC_EXT_TREATMENT_CAT));
Extension nhsCommExtension = new Extension();
nhsCommExtension.setUrl(SystemURL.SD_CC_EXT_NHS_COMMUNICATION);
nhsCommExtension.addExtension(createCodingExtension("en", "English", SystemURL.CS_CC_HUMAN_LANG, SystemURL.SD_CC_EXT_COMM_LANGUAGE));
nhsCommExtension.addExtension(new Extension(SystemURL.SD_CC_COMM_PREFERRED, new BooleanType(false)));
nhsCommExtension.addExtension(createCodingExtension("RWR", "Received written", SystemURL.CS_CC_LANG_ABILITY_MODE, SystemURL.SD_CC_MODE_OF_COMM));
nhsCommExtension.addExtension(createCodingExtension("E", "Excellent", SystemURL.CS_CC_LANG_ABILITY_PROFI, SystemURL.SD_CC_COMM_PROFICIENCY));
nhsCommExtension.addExtension(new Extension(SystemURL.SD_CC_INTERPRETER_REQUIRED, new BooleanType(false)));
patient.addExtension(nhsCommExtension);
Identifier localIdentifier = new Identifier();
localIdentifier.setUse(IdentifierUse.USUAL);
localIdentifier.setSystem(SystemURL.ID_LOCAL_PATIENT_IDENTIFIER);
localIdentifier.setValue("123456");
CodeableConcept liType = new CodeableConcept();
Coding liTypeCoding = new Coding();
liTypeCoding.setCode("EN");
liTypeCoding.setDisplay("Employer number");
liTypeCoding.setSystem(SystemURL.VS_IDENTIFIER_TYPE);
liType.addCoding(liTypeCoding);
localIdentifier.setType(liType);
localIdentifier.setAssigner(new Reference("Organization/1"));
patient.addIdentifier(localIdentifier);
Calendar calendar = Calendar.getInstance();
calendar.set(2017, 1, 1);
DateTimeDt endDate = new DateTimeDt(calendar.getTime());
calendar.set(2016, 1, 1);
DateTimeDt startDate = new DateTimeDt(calendar.getTime());
Period pastPeriod = new Period().setStart(calendar.getTime()).setEnd(calendar.getTime());
patient.addName().setFamily("AnotherOfficialFamilyName").addGiven("AnotherOfficialGivenName").setUse(NameUse.OFFICIAL).setPeriod(pastPeriod);
patient.addName().setFamily("AdditionalFamily").addGiven("AdditionalGiven").setUse(NameUse.TEMP);
patient.addTelecom(staticElHelper.getValidTelecom());
patient.addAddress(staticElHelper.getValidAddress());
return patient;
}
use of org.hl7.fhir.dstu3.model.Extension in project gpconnect-demonstrator by nhsconnect.
the class AppointmentResourceProvider method appointmentResourceConverterToAppointmentDetail.
/**
* fhir resource Appointment to AppointmentDetail
*
* @param appointment Resource
* @return populated AppointmentDetail
*/
private AppointmentDetail appointmentResourceConverterToAppointmentDetail(Appointment appointment) {
appointmentValidation.validateAppointmentExtensions(appointment.getExtension());
if (appointmentValidation.appointmentDescriptionTooLong(appointment)) {
throwUnprocessableEntity422_InvalidResourceException("Appointment description cannot be greater then " + APPOINTMENT_DESCRIPTION_LENGTH + " characters");
}
AppointmentDetail appointmentDetail = new AppointmentDetail();
Long id = appointment.getIdElement().getIdPartAsLong();
appointmentDetail.setId(id);
appointmentDetail.setLastUpdated(getLastUpdated(appointment.getMeta().getLastUpdated()));
List<Extension> cnlExtension = appointment.getExtensionsByUrl(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON);
if (cnlExtension != null && !cnlExtension.isEmpty()) {
IBaseDatatype value = cnlExtension.get(0).getValue();
if (null == value) {
throwInvalidRequest400_BadRequestException("Cancellation reason missing.");
}
appointmentDetail.setCancellationReason(value.toString());
}
appointmentDetail.setStatus(appointment.getStatus().toString().toLowerCase(Locale.UK));
appointmentDetail.setMinutesDuration(appointment.getMinutesDuration());
appointmentDetail.setPriority(appointment.getPriority());
appointmentDetail.setStartDateTime(appointment.getStart());
appointmentDetail.setEndDateTime(appointment.getEnd());
List<Long> slotIds = new ArrayList<>();
for (Reference slotReference : appointment.getSlot()) {
// #200 check slots for absolute references
checkReferenceIsRelative(slotReference.getReference());
try {
String here = slotReference.getReference().substring("Slot/".length());
Long slotId = new Long(here);
slotIds.add(slotId);
} catch (NumberFormatException ex) {
throwUnprocessableEntity422_InvalidResourceException(String.format("The slot reference value data type for %s is not valid.", slotReference.getReference()));
}
}
appointmentDetail.setSlotIds(slotIds);
if (appointmentValidation.appointmentCommentTooLong(appointment)) {
throwUnprocessableEntity422_InvalidResourceException("Appointment comment cannot be greater than " + APPOINTMENT_COMMENT_LENGTH + " characters");
}
appointmentDetail.setComment(appointment.getComment());
appointmentDetail.setDescription(appointment.getDescription());
for (AppointmentParticipantComponent participant : appointment.getParticipant()) {
if (participant.getActor() != null) {
String participantReference = participant.getActor().getReference();
String actorIdString = participantReference.substring(participantReference.lastIndexOf("/") + 1);
Long actorId;
if (actorIdString.equals("null")) {
actorId = null;
} else {
actorId = Long.valueOf(actorIdString);
}
if (participantReference.contains("Patient/")) {
appointmentDetail.setPatientId(actorId);
} else if (participantReference.contains("Practitioner/")) {
appointmentDetail.setPractitionerId(actorId);
} else if (participantReference.contains("Location/")) {
appointmentDetail.setLocationId(actorId);
}
} else {
throwUnprocessableEntity422_InvalidResourceException("Participant Actor cannot be null");
}
}
if (appointment.getCreated() != null) {
Date created = appointment.getCreated();
appointmentDetail.setCreated(created);
}
// #200 check extensions for absolute references
List<Extension> extensions = appointment.getExtension();
for (Extension extension : extensions) {
try {
Reference reference = (Reference) extension.getValue();
if (reference != null) {
checkReferenceIsRelative(reference.getReference());
}
} catch (ClassCastException ex) {
}
}
List<Resource> contained = appointment.getContained();
if (contained != null && !contained.isEmpty()) {
Resource org = contained.get(0);
Organization bookingOrgRes = (Organization) org;
BookingOrgDetail bookingOrgDetail = new BookingOrgDetail();
appointmentValidation.validateBookingOrganizationValuesArePresent(bookingOrgRes);
bookingOrgDetail.setName(bookingOrgRes.getName());
// #198 add system and optional use type. Pick system phone if > 1 and available otherwise use the one supplied
Iterator<ContactPoint> iter = bookingOrgRes.getTelecom().iterator();
ContactPoint telecom = bookingOrgRes.getTelecomFirstRep();
while (iter.hasNext()) {
ContactPoint thisTelecom = iter.next();
if (thisTelecom.getSystem() == ContactPoint.ContactPointSystem.PHONE) {
telecom = thisTelecom;
break;
}
}
bookingOrgDetail.setTelephone(telecom.getValue());
bookingOrgDetail.setSystem(telecom.getSystem().toString());
if (telecom.getUse() != null && !telecom.getUse().toString().trim().isEmpty()) {
bookingOrgDetail.setUsetype(telecom.getUse().toString());
}
if (!bookingOrgRes.getIdentifier().isEmpty()) {
bookingOrgDetail.setOrgCode(bookingOrgRes.getIdentifierFirstRep().getValue());
String system = bookingOrgRes.getIdentifierFirstRep().getSystem();
// check that organization identifier system is https://fhir.nhs.uk/Id/ods-organization-code
if (system != null && !system.trim().isEmpty()) {
if (!system.equals(ID_ODS_ORGANIZATION_CODE)) {
throwUnprocessableEntity422_InvalidResourceException("Appointment organisation identifier system must be an ODS code!");
}
} else {
throwUnprocessableEntity422_InvalidResourceException("Appointment organisation identifier system must be populated!");
}
}
bookingOrgDetail.setAppointmentDetail(appointmentDetail);
appointmentDetail.setBookingOrganization(bookingOrgDetail);
// 1.2.7
appointmentDetail.setServiceCategory(appointment.getServiceCategory().getText());
appointmentDetail.setServiceType(appointment.getServiceTypeFirstRep().getText());
}
return appointmentDetail;
}
use of org.hl7.fhir.dstu3.model.Extension in project gpconnect-demonstrator by nhsconnect.
the class AppointmentResourceProvider method appointmentDetailToAppointmentResourceConverter.
/**
* AppointmentDetail to fhir resource Appointment
*
* @param appointmentDetail
* @return Appointment Resource
*/
private Appointment appointmentDetailToAppointmentResourceConverter(AppointmentDetail appointmentDetail) {
Appointment appointment = new Appointment();
String appointmentId = String.valueOf(appointmentDetail.getId());
String versionId = String.valueOf(appointmentDetail.getLastUpdated().getTime());
String resourceType = appointment.getResourceType().toString();
IdType id = new IdType(resourceType, appointmentId, versionId);
appointment.setId(id);
appointment.getMeta().setVersionId(versionId);
appointment.getMeta().setLastUpdated(appointmentDetail.getLastUpdated());
appointment.getMeta().addProfile(SystemURL.SD_GPC_APPOINTMENT);
Extension extension = new Extension(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON, new StringType(appointmentDetail.getCancellationReason()));
appointment.addExtension(extension);
// #157 derive delivery channel from slot
List<Long> sids = appointmentDetail.getSlotIds();
ScheduleDetail scheduleDetail = null;
if (sids.size() > 0) {
// get the first slot but it should not matter because for multi slot appts the deliveryChannel is always the same
SlotDetail slotDetail = slotSearch.findSlotByID(sids.get(0));
String deliveryChannel = slotDetail.getDeliveryChannelCode();
if (deliveryChannel != null && !deliveryChannel.trim().isEmpty()) {
Extension deliveryChannelExtension = new Extension(SystemURL.SD_EXTENSION_GPC_DELIVERY_CHANNEL, new CodeType(deliveryChannel));
appointment.addExtension(deliveryChannelExtension);
}
scheduleDetail = scheduleSearch.findScheduleByID(slotDetail.getScheduleReference());
}
// practitioner role extension here
// lookup the practitioner
Long practitionerID = appointmentDetail.getPractitionerId();
if (practitionerID != null) {
// #195 we need to get this detail from the schedule not the practitioner table
if (scheduleDetail != null) {
Coding roleCoding = new Coding(SystemURL.VS_GPC_PRACTITIONER_ROLE, scheduleDetail.getPractitionerRoleCode(), scheduleDetail.getPractitionerRoleDisplay());
Extension practitionerRoleExtension = new Extension(SystemURL.SD_EXTENSION_GPC_PRACTITIONER_ROLE, new CodeableConcept().addCoding(roleCoding));
appointment.addExtension(practitionerRoleExtension);
}
}
switch(appointmentDetail.getStatus().toLowerCase(Locale.UK)) {
case "pending":
appointment.setStatus(AppointmentStatus.PENDING);
break;
case "booked":
appointment.setStatus(AppointmentStatus.BOOKED);
break;
case "arrived":
appointment.setStatus(AppointmentStatus.ARRIVED);
break;
case "fulfilled":
appointment.setStatus(AppointmentStatus.FULFILLED);
break;
case "cancelled":
appointment.setStatus(AppointmentStatus.CANCELLED);
break;
case "noshow":
appointment.setStatus(AppointmentStatus.NOSHOW);
break;
default:
appointment.setStatus(AppointmentStatus.PENDING);
break;
}
appointment.setStart(appointmentDetail.getStartDateTime());
appointment.setEnd(appointmentDetail.getEndDateTime());
// #218 Date time formats
appointment.getStartElement().setPrecision(TemporalPrecisionEnum.SECOND);
appointment.getEndElement().setPrecision(TemporalPrecisionEnum.SECOND);
List<Reference> slotResources = new ArrayList<>();
for (Long slotId : appointmentDetail.getSlotIds()) {
slotResources.add(new Reference("Slot/" + slotId));
}
appointment.setSlot(slotResources);
if (appointmentDetail.getPriority() != null) {
appointment.setPriority(appointmentDetail.getPriority());
}
appointment.setComment(appointmentDetail.getComment());
appointment.setDescription(appointmentDetail.getDescription());
appointment.addParticipant().setActor(new Reference("Patient/" + appointmentDetail.getPatientId())).setStatus(ParticipationStatus.ACCEPTED);
appointment.addParticipant().setActor(new Reference("Location/" + appointmentDetail.getLocationId())).setStatus(ParticipationStatus.ACCEPTED);
if (null != appointmentDetail.getPractitionerId()) {
appointment.addParticipant().setActor(new Reference("Practitioner/" + appointmentDetail.getPractitionerId())).setStatus(ParticipationStatus.ACCEPTED);
}
if (null != appointmentDetail.getCreated()) {
appointment.setCreated(appointmentDetail.getCreated());
}
if (null != appointmentDetail.getBookingOrganization()) {
// add extension with reference to contained item
String reference = "#1";
Reference orgRef = new Reference(reference);
Extension bookingOrgExt = new Extension(SystemURL.SD_CC_APPOINTMENT_BOOKINGORG, orgRef);
appointment.addExtension(bookingOrgExt);
BookingOrgDetail bookingOrgDetail = appointmentDetail.getBookingOrganization();
Organization bookingOrg = new Organization();
bookingOrg.setId(reference);
bookingOrg.getNameElement().setValue(bookingOrgDetail.getName());
// #198 org phone now persists usetype and system
ContactPoint orgTelecom = bookingOrg.getTelecomFirstRep();
orgTelecom.setValue(bookingOrgDetail.getTelephone());
try {
orgTelecom.setSystem(ContactPointSystem.fromCode(bookingOrgDetail.getSystem().toLowerCase()));
if (bookingOrgDetail.getUsetype() != null && !bookingOrgDetail.getUsetype().trim().isEmpty()) {
orgTelecom.setUse(ContactPointUse.fromCode(bookingOrgDetail.getUsetype().toLowerCase()));
}
} catch (FHIRException ex) {
// Logger.getLogger(AppointmentResourceProvider.class.getName()).log(Level.SEVERE, null, ex);
}
bookingOrg.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
if (null != bookingOrgDetail.getOrgCode()) {
bookingOrg.getIdentifierFirstRep().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(bookingOrgDetail.getOrgCode());
}
// add contained booking organization resource
appointment.getContained().add(bookingOrg);
}
// if bookingOrganization
appointment.setMinutesDuration(appointmentDetail.getMinutesDuration());
// 1.2.7 set service category from schedule type description
appointment.setServiceCategory(new CodeableConcept().setText(scheduleDetail.getTypeDescription()));
// 1.2.7 set service type from slot type description
appointment.addServiceType(new CodeableConcept().setText(slotSearch.findSlotByID(sids.get(0)).getTypeDisply()));
return appointment;
}
use of org.hl7.fhir.dstu3.model.Extension in project gpconnect-demonstrator by nhsconnect.
the class ScheduleResourceProvider method scheduleDetailToScheduleResourceConverter.
private Schedule scheduleDetailToScheduleResourceConverter(ScheduleDetail scheduleDetail) {
Schedule schedule = new Schedule();
String resourceId = String.valueOf(scheduleDetail.getId());
String versionId = String.valueOf(scheduleDetail.getLastUpdated().getTime());
String resourceType = schedule.getResourceType().toString();
IdType id = new IdType(resourceType, resourceId, versionId);
schedule.setId(id);
schedule.getMeta().setVersionId(versionId);
schedule.getMeta().setLastUpdated(scheduleDetail.getLastUpdated());
if (scheduleDetail.getPractitionerId() != null) {
schedule.addActor(new Reference("Practitioner/" + scheduleDetail.getPractitionerId()));
}
if (scheduleDetail.getPractitionerRoleCode() != null) {
Coding roleCoding = new Coding(SystemURL.VS_GPC_PRACTITIONER_ROLE, scheduleDetail.getPractitionerRoleCode(), scheduleDetail.getPractitionerRoleDisplay());
Extension practitionerRoleExtension = new Extension(SystemURL.SD_EXTENSION_GPC_PRACTITIONER_ROLE, new CodeableConcept().addCoding(roleCoding));
schedule.addExtension(practitionerRoleExtension);
}
// # 194
// Identifier identifier = new Identifier();
// identifier.setSystem(SystemURL.ID_GPC_SCHEDULE_IDENTIFIER);
// identifier.setValue(scheduleDetail.getIdentifier());
// schedule.addIdentifier(identifier);
Coding coding = new Coding().setSystem(SystemURL.HL7_VS_C80_PRACTICE_CODES).setCode(scheduleDetail.getTypeCode()).setDisplay(scheduleDetail.getTypeDescription());
CodeableConcept codableConcept = new CodeableConcept().addCoding(coding);
codableConcept.setText(scheduleDetail.getTypeDescription());
schedule.addActor(new Reference("Location/" + scheduleDetail.getLocationId()));
Period period = new Period();
period.setStart(scheduleDetail.getStartDateTime());
period.setEnd(scheduleDetail.getEndDateTime());
schedule.setPlanningHorizon(period);
// 1.2.7 remove comment
// schedule.setComment(scheduleDetail.getComment());
// 1.2.7 add schedule type description as service category
schedule.setServiceCategory(new CodeableConcept().setText(scheduleDetail.getTypeDescription()));
return schedule;
}
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