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Example 1 with StringParam

use of ca.uhn.fhir.rest.param.StringParam in project cqf-ruler by DBCG.

the class Searches method byName.

public static SearchParameterMap byName(String theName, String theVersion) {
    checkNotNull(theName);
    checkNotNull(theVersion);
    return byName(theName).add(VERSION_SP, new StringParam(theVersion));
}
Also used : StringParam(ca.uhn.fhir.rest.param.StringParam)

Example 2 with StringParam

use of ca.uhn.fhir.rest.param.StringParam in project cqf-ruler by DBCG.

the class Searches method byUrl.

public static SearchParameterMap byUrl(String theUrl, String theVersion) {
    checkNotNull(theUrl);
    checkNotNull(theVersion);
    return byParam(URL_SP, new UriParam(theUrl)).add(VERSION_SP, new StringParam(theVersion));
}
Also used : StringParam(ca.uhn.fhir.rest.param.StringParam) UriParam(ca.uhn.fhir.rest.param.UriParam)

Example 3 with StringParam

use of ca.uhn.fhir.rest.param.StringParam in project cqf-ruler by DBCG.

the class CacheValueSetsProvider method cacheValuesets.

/**
 * Using basic authentication this {@link Operation Operation} will update
 * any {@link ValueSet Valueset} listed given the {@link Endpoint Endpoint}
 * provided.
 * Any Valuesets that require expansion will be expanded.
 *
 * @param details    the {@link RequestDetails RequestDetails}
 * @param endpointId the {@link Endpoint Endpoint} id
 * @param valuesets  the {@link StringAndListParam list} of {@link ValueSet
 *                   Valueset} ids
 * @param userName   the userName
 * @param password   the password
 * @return the {@link OperationOutcome OperationOutcome} or the resulting
 *         {@link Bundle Bundle}
 */
@Description(shortDefinition = "$cache-valuesets", value = "Using basic authentication this Operation will update any Valueset listed given the Endpoint provided. Any Valuesets that require expansion will be expanded.", example = "Endpoint/example-id/$cache-valuesets?valuesets=valuesetId1&valuesets=valuesetId2&user=user&password=password")
@Operation(name = "$cache-valuesets", idempotent = true, type = Endpoint.class)
public Resource cacheValuesets(RequestDetails details, @IdParam IdType endpointId, @OperationParam(name = "valuesets") StringAndListParam valuesets, @OperationParam(name = "user") String userName, @OperationParam(name = "pass") String password) {
    Endpoint endpoint = null;
    try {
        endpoint = this.endpointDao.read(endpointId);
        if (endpoint == null) {
            return createErrorOutcome("Could not find Endpoint/" + endpointId);
        }
    } catch (Exception e) {
        return createErrorOutcome("Could not find Endpoint/" + endpointId + "\n" + e);
    }
    IGenericClient client = Clients.forEndpoint(ourCtx, endpoint);
    if (userName != null || password != null) {
        if (userName == null) {
            return createErrorOutcome("Password was provided, but not a user name.");
        } else if (password == null) {
            return createErrorOutcome("User name was provided, but not a password.");
        }
        BasicAuthInterceptor basicAuth = new BasicAuthInterceptor(userName, password);
        client.registerInterceptor(basicAuth);
    // TODO - more advanced security like bearer tokens, etc...
    }
    try {
        Bundle bundleToPost = new Bundle();
        for (StringOrListParam params : valuesets.getValuesAsQueryTokens()) {
            for (StringParam valuesetId : params.getValuesAsQueryTokens()) {
                bundleToPost.addEntry().setRequest(new Bundle.BundleEntryRequestComponent().setMethod(Bundle.HTTPVerb.PUT).setUrl("ValueSet/" + valuesetId.getValue())).setResource(resolveValueSet(client, valuesetId.getValue()));
            }
        }
        return (Resource) systemDao.transaction(details, bundleToPost);
    } catch (Exception e) {
        return createErrorOutcome(e.getMessage());
    }
}
Also used : Endpoint(org.hl7.fhir.dstu3.model.Endpoint) BasicAuthInterceptor(ca.uhn.fhir.rest.client.interceptor.BasicAuthInterceptor) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.dstu3.model.Bundle) Resource(org.hl7.fhir.dstu3.model.Resource) StringParam(ca.uhn.fhir.rest.param.StringParam) StringOrListParam(ca.uhn.fhir.rest.param.StringOrListParam) Description(ca.uhn.fhir.model.api.annotation.Description) Operation(ca.uhn.fhir.rest.annotation.Operation)

Example 4 with StringParam

use of ca.uhn.fhir.rest.param.StringParam in project cqf-ruler by DBCG.

the class CacheValueSetsProvider method cacheValuesets.

/**
 * Using basic authentication this {@link Operation Operation} will update
 * any {@link ValueSet Valueset} listed given the {@link Endpoint Endpoint}
 * provided.
 * Any Valuesets that require expansion will be expanded.
 *
 * @param details    the {@link RequestDetails RequestDetails}
 * @param endpointId the {@link Endpoint Endpoint} id
 * @param valuesets  the {@link StringAndListParam list} of {@link ValueSet
 *                   Valueset} ids
 * @param userName   the userName
 * @param password   the password
 * @return the {@link OperationOutcome OperationOutcome} or the resulting
 *         {@link Bundle Bundle}
 */
@Description(shortDefinition = "$cache-valuesets", value = "Using basic authentication this Operation will update any Valueset listed given the Endpoint provided. Any Valuesets that require expansion will be expanded.", example = "Endpoint/example-id/$cache-valuesets?valuesets=valuesetId1&valuesets=valuesetId2&user=user&password=password")
@Operation(name = "cache-valuesets", idempotent = true, type = Endpoint.class)
public Resource cacheValuesets(RequestDetails details, @IdParam IdType endpointId, @OperationParam(name = "valuesets") StringAndListParam valuesets, @OperationParam(name = "user") String userName, @OperationParam(name = "pass") String password) {
    Endpoint endpoint = null;
    try {
        endpoint = this.endpointDao.read(endpointId);
        if (endpoint == null) {
            return createErrorOutcome("Could not find Endpoint/" + endpointId);
        }
    } catch (Exception e) {
        return createErrorOutcome("Could not find Endpoint/" + endpointId + "\n" + e);
    }
    IGenericClient client = Clients.forEndpoint(ourCtx, endpoint);
    if (userName != null || password != null) {
        if (userName == null) {
            return createErrorOutcome("Password was provided, but not a user name.");
        } else if (password == null) {
            return createErrorOutcome("User name was provided, but not a password.");
        }
        BasicAuthInterceptor basicAuth = new BasicAuthInterceptor(userName, password);
        client.registerInterceptor(basicAuth);
    // TODO - more advanced security like bearer tokens, etc...
    }
    try {
        Bundle bundleToPost = new Bundle();
        for (StringOrListParam params : valuesets.getValuesAsQueryTokens()) {
            for (StringParam valuesetId : params.getValuesAsQueryTokens()) {
                bundleToPost.addEntry().setRequest(new Bundle.BundleEntryRequestComponent().setMethod(Bundle.HTTPVerb.PUT).setUrl("ValueSet/" + valuesetId.getValue())).setResource(resolveValueSet(client, valuesetId.getValue()));
            }
        }
        return (Resource) systemDao.transaction(details, bundleToPost);
    } catch (Exception e) {
        return createErrorOutcome(e.getMessage());
    }
}
Also used : Endpoint(org.hl7.fhir.r4.model.Endpoint) BasicAuthInterceptor(ca.uhn.fhir.rest.client.interceptor.BasicAuthInterceptor) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.r4.model.Bundle) Resource(org.hl7.fhir.r4.model.Resource) StringParam(ca.uhn.fhir.rest.param.StringParam) StringOrListParam(ca.uhn.fhir.rest.param.StringOrListParam) Description(ca.uhn.fhir.model.api.annotation.Description) Operation(ca.uhn.fhir.rest.annotation.Operation)

Example 5 with StringParam

use of ca.uhn.fhir.rest.param.StringParam in project MobileAccessGateway by i4mi.

the class Iti67RequestConverter method searchParameterIti67ToFindDocumentsQuery.

/**
 * convert ITI-67 request to ITI-18 request
 * @param searchParameter
 * @return
 */
public QueryRegistry searchParameterIti67ToFindDocumentsQuery(@Body Iti67SearchParameters searchParameter) {
    boolean getLeafClass = true;
    Query searchQuery = null;
    if (searchParameter.get_id() != null || searchParameter.getIdentifier() != null) {
        GetDocumentsQuery query = new GetDocumentsQuery();
        if (searchParameter.getIdentifier() != null) {
            String val = searchParameter.getIdentifier().getValue();
            if (val.startsWith("urn:oid:")) {
                query.setUniqueIds(Collections.singletonList(val.substring("urn:oid:".length())));
            } else if (val.startsWith("urn:uuid:")) {
                query.setUuids(Collections.singletonList(val.substring("urn:uuid:".length())));
            }
        } else {
            query.setUuids(Collections.singletonList(searchParameter.get_id().getValue()));
        }
        searchQuery = query;
    } else {
        FindDocumentsQuery query;
        // TODO   related Note 4                  -->  $XDSDocumentEntryReferenceIdList
        TokenOrListParam related = searchParameter.getRelated();
        if (related != null) {
            FindDocumentsByReferenceIdQuery referenceIdQuery = new FindDocumentsByReferenceIdQuery();
            ;
            QueryList<ReferenceId> outerReferences = new QueryList<ReferenceId>();
            List<ReferenceId> references = new ArrayList<ReferenceId>();
            for (TokenParam token : related.getValuesAsQueryTokens()) {
                references.add(new ReferenceId(token.getValue(), null, getScheme(token.getSystem())));
            }
            outerReferences.getOuterList().add(references);
            referenceIdQuery.setTypedReferenceIds(outerReferences);
            query = referenceIdQuery;
        } else
            query = new FindDocumentsQuery();
        // query.setMetadataLevel(metadataLevel);
        // status  -->  $XDSDocumentEntryStatus
        TokenOrListParam status = searchParameter.getStatus();
        if (status != null) {
            List<AvailabilityStatus> availabilites = new ArrayList<AvailabilityStatus>();
            for (TokenParam statusToken : status.getValuesAsQueryTokens()) {
                String tokenValue = statusToken.getValue();
                if (tokenValue.equals("current"))
                    availabilites.add(AvailabilityStatus.APPROVED);
                else if (tokenValue.equals("superseded"))
                    availabilites.add(AvailabilityStatus.DEPRECATED);
            }
            query.setStatus(availabilites);
        }
        // patient or patient.identifier  -->  $XDSDocumentEntryPatientId
        TokenParam tokenIdentifier = searchParameter.getPatientIdentifier();
        if (tokenIdentifier != null) {
            String system = getScheme(tokenIdentifier.getSystem());
            if (system == null)
                throw new InvalidRequestException("Missing OID for patient");
            query.setPatientId(new Identifiable(tokenIdentifier.getValue(), new AssigningAuthority(system)));
        }
        ReferenceParam patientRef = searchParameter.getPatientReference();
        if (patientRef != null) {
            Identifiable id = transformReference(patientRef.getValue());
            query.setPatientId(id);
        }
        // date Note 1 Note 5              -->  $DSDocumentEntryCreationTimeFrom
        // date Note 2 Note 5              -->  $XDSDocumentEntryCreationTimeTo
        DateRangeParam dateRange = searchParameter.getDate();
        if (dateRange != null) {
            DateParam creationTimeFrom = dateRange.getLowerBound();
            DateParam creationTimeTo = dateRange.getUpperBound();
            query.getCreationTime().setFrom(timestampFromDateParam(creationTimeFrom));
            query.getCreationTime().setTo(timestampFromDateParam(creationTimeTo));
        }
        // period Note 1                   -->  $XDSDocumentEntryServiceStartTimeFrom
        // period Note 2                   -->  $XDSDocumentEntryServiceStartTimeTo
        // period Note 1                   -->  $XDSDocumentEntryServiceStopTimeFrom
        // period Note 2                   -->  $XDSDocumentEntryServiceStopTimeTo
        DateRangeParam periodRange = searchParameter.getPeriod();
        if (periodRange != null) {
            DateParam periodFrom = periodRange.getLowerBound();
            DateParam periodTo = periodRange.getUpperBound();
            query.getServiceStopTime().setFrom(timestampFromDateParam(periodFrom));
            query.getServiceStartTime().setTo(timestampFromDateParam(periodTo));
        }
        // category                        -->  $XDSDocumentEntryClassCode
        TokenOrListParam categories = searchParameter.getCategory();
        query.setClassCodes(codesFromTokens(categories));
        // type                            -->  $XDSDocumentEntryTypeCode
        TokenOrListParam types = searchParameter.getType();
        query.setTypeCodes(codesFromTokens(types));
        // setting                         -->  $XDSDocumentEntryPracticeSettingCode
        TokenOrListParam settings = searchParameter.getSetting();
        query.setPracticeSettingCodes(codesFromTokens(settings));
        // facility                        -->  $XDSDocumentEntryHealthcareFacilityTypeCode
        TokenOrListParam facilities = searchParameter.getFacility();
        query.setHealthcareFacilityTypeCodes(codesFromTokens(facilities));
        // event                           -->  $XDSDocumentEntryEventCodeList
        TokenOrListParam events = searchParameter.getEvent();
        if (events != null) {
            QueryList<Code> eventCodeList = new QueryList<Code>();
            eventCodeList.getOuterList().add(codesFromTokens(events));
            query.setEventCodes(eventCodeList);
        }
        // security-label                  -->  $XDSDocumentEntryConfidentialityCode
        TokenOrListParam securityLabels = searchParameter.getSecurityLabel();
        if (securityLabels != null) {
            QueryList<Code> confidentialityCodes = new QueryList<Code>();
            confidentialityCodes.getOuterList().add(codesFromTokens(securityLabels));
            query.setConfidentialityCodes(confidentialityCodes);
        }
        // format                          -->  $XDSDocumentEntryFormatCode
        TokenOrListParam formats = searchParameter.getFormat();
        query.setFormatCodes(codesFromTokens(formats));
        // TODO   author.given / author.family    -->  $XDSDocumentEntryAuthorPerson
        StringParam authorGivenName = searchParameter.getAuthorGivenName();
        StringParam authorFamilyName = searchParameter.getAuthorFamilyName();
        if (authorGivenName != null || authorFamilyName != null) {
            Person person = new Person();
            XcnName name = new XcnName();
            if (authorFamilyName != null)
                name.setFamilyName(authorFamilyName.getValue());
            if (authorGivenName != null)
                name.setGivenName(authorGivenName.getValue());
            person.setName(name);
            // String author = (authorGivenName != null ? authorGivenName.getValue() : "%")+" "+(authorFamilyName != null ? authorFamilyName.getValue() : "%");
            List<Person> authorPersons = Collections.singletonList(person);
            query.setTypedAuthorPersons(authorPersons);
        }
        searchQuery = query;
    }
    final QueryRegistry queryRegistry = new QueryRegistry(searchQuery);
    queryRegistry.setReturnType((getLeafClass) ? QueryReturnType.LEAF_CLASS : QueryReturnType.OBJECT_REF);
    return queryRegistry;
}
Also used : FindDocumentsQuery(org.openehealth.ipf.commons.ihe.xds.core.requests.query.FindDocumentsQuery) FindDocumentsByReferenceIdQuery(org.openehealth.ipf.commons.ihe.xds.core.requests.query.FindDocumentsByReferenceIdQuery) Query(org.openehealth.ipf.commons.ihe.xds.core.requests.query.Query) GetDocumentsQuery(org.openehealth.ipf.commons.ihe.xds.core.requests.query.GetDocumentsQuery) ArrayList(java.util.ArrayList) ReferenceParam(ca.uhn.fhir.rest.param.ReferenceParam) FindDocumentsQuery(org.openehealth.ipf.commons.ihe.xds.core.requests.query.FindDocumentsQuery) GetDocumentsQuery(org.openehealth.ipf.commons.ihe.xds.core.requests.query.GetDocumentsQuery) ReferenceId(org.openehealth.ipf.commons.ihe.xds.core.metadata.ReferenceId) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) StringParam(ca.uhn.fhir.rest.param.StringParam) QueryList(org.openehealth.ipf.commons.ihe.xds.core.requests.query.QueryList) DateParam(ca.uhn.fhir.rest.param.DateParam) QueryRegistry(org.openehealth.ipf.commons.ihe.xds.core.requests.QueryRegistry) FindDocumentsByReferenceIdQuery(org.openehealth.ipf.commons.ihe.xds.core.requests.query.FindDocumentsByReferenceIdQuery) XcnName(org.openehealth.ipf.commons.ihe.xds.core.metadata.XcnName) AssigningAuthority(org.openehealth.ipf.commons.ihe.xds.core.metadata.AssigningAuthority) Code(org.openehealth.ipf.commons.ihe.xds.core.metadata.Code) Identifiable(org.openehealth.ipf.commons.ihe.xds.core.metadata.Identifiable) DateRangeParam(ca.uhn.fhir.rest.param.DateRangeParam) TokenOrListParam(ca.uhn.fhir.rest.param.TokenOrListParam) AvailabilityStatus(org.openehealth.ipf.commons.ihe.xds.core.metadata.AvailabilityStatus) TokenParam(ca.uhn.fhir.rest.param.TokenParam) Person(org.openehealth.ipf.commons.ihe.xds.core.metadata.Person)

Aggregations

StringParam (ca.uhn.fhir.rest.param.StringParam)270 Test (org.junit.Test)251 IBundleProvider (ca.uhn.fhir.rest.api.server.IBundleProvider)248 StringAndListParam (ca.uhn.fhir.rest.param.StringAndListParam)243 SearchParameterMap (org.openmrs.module.fhir2.api.search.param.SearchParameterMap)173 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)154 StringOrListParam (ca.uhn.fhir.rest.param.StringOrListParam)116 BaseModuleContextSensitiveTest (org.openmrs.test.BaseModuleContextSensitiveTest)101 BaseFhirProvenanceResourceTest (org.openmrs.module.fhir2.providers.BaseFhirProvenanceResourceTest)37 MockIBundleProvider (org.openmrs.module.fhir2.providers.r4.MockIBundleProvider)30 Practitioner (org.hl7.fhir.r4.model.Practitioner)26 TokenAndListParam (ca.uhn.fhir.rest.param.TokenAndListParam)21 TokenParam (ca.uhn.fhir.rest.param.TokenParam)21 Patient (org.hl7.fhir.r4.model.Patient)21 SimpleBundleProvider (ca.uhn.fhir.rest.server.SimpleBundleProvider)18 NumberParam (ca.uhn.fhir.rest.param.NumberParam)16 Observation (org.hl7.fhir.r4.model.Observation)16 ReferenceParam (ca.uhn.fhir.rest.param.ReferenceParam)14 ArrayList (java.util.ArrayList)14 Location (org.hl7.fhir.r4.model.Location)14