Examples with Location org.hl7.fhir.r4.model.Location used on opensource projects

Example 1 with Location

use of org.hl7.fhir.r4.model.Location in project metacat by Netflix.

the class S3ConnectorTableService method update.

@Override
public void update(@Nonnull final ConnectorRequestContext context, @Nonnull final TableInfo tableInfo) {
    log.debug("Start: Update table {}", tableInfo.getName());
    final QualifiedName tableName = tableInfo.getName();
    final Table table = tableDao.getBySourceDatabaseTableName(catalogName, tableName.getDatabaseName(), tableName.getTableName());
    if (table == null) {
        throw new TableNotFoundException(tableName);
    }
    // we can update the fields, the uri, or the full serde
    final Location newLocation = infoConverter.toLocation(tableInfo);
    Location location = table.getLocation();
    if (location == null) {
        location = new Location();
        location.setTable(table);
        table.setLocation(location);
    }
    if (newLocation.getUri() != null) {
        location.setUri(newLocation.getUri());
    }
    final Info newInfo = newLocation.getInfo();
    if (newInfo != null) {
        final Info info = location.getInfo();
        if (info == null) {
            location.setInfo(newInfo);
            newInfo.setLocation(location);
        } else {
            if (newInfo.getInputFormat() != null) {
                info.setInputFormat(newInfo.getInputFormat());
            }
            if (newInfo.getOutputFormat() != null) {
                info.setOutputFormat(newInfo.getOutputFormat());
            }
            if (newInfo.getOwner() != null) {
                info.setOwner(newInfo.getOwner());
            }
            if (newInfo.getSerializationLib() != null) {
                info.setSerializationLib(newInfo.getSerializationLib());
            }
            if (newInfo.getParameters() != null && !newInfo.getParameters().isEmpty()) {
                info.setParameters(newInfo.getParameters());
            }
        }
    }
    final Schema newSchema = newLocation.getSchema();
    if (newSchema != null) {
        final List<Field> newFields = newSchema.getFields();
        if (newFields != null && !newFields.isEmpty()) {
            final Schema schema = location.getSchema();
            if (schema == null) {
                location.setSchema(newSchema);
                newSchema.setLocation(location);
            } else {
                final List<Field> fields = schema.getFields();
                if (fields.isEmpty()) {
                    newFields.forEach(field -> {
                        field.setSchema(schema);
                        fields.add(field);
                    });
                } else {
                    for (int i = 0; i < newFields.size(); i++) {
                        final Field newField = newFields.get(i);
                        newField.setPos(i);
                        newField.setSchema(schema);
                        if (newField.getType() == null) {
                            newField.setType(newField.getSourceType());
                        }
                    }
                    schema.setFields(null);
                    fieldDao.delete(fields);
                    tableDao.save(table, true);
                    schema.setFields(newFields);
                }
            }
        }
    }
    log.debug("End: Update table {}", tableInfo.getName());
}

Example 2 with Location

use of org.hl7.fhir.r4.model.Location in project metacat by Netflix.

the class S3ConnectorInfoConverter method toFields.

private List<FieldInfo> toFields(final Table table) {
    List<FieldInfo> result = Lists.newArrayList();
    final Location location = table.getLocation();
    if (location != null) {
        final Schema schema = location.getSchema();
        if (schema != null) {
            result = schema.getFields().stream().sorted(Comparator.comparing(Field::getPos)).map(this::toFieldInfo).collect(Collectors.toList());
        }
    }
    return result;
}

Example 3 with Location

use of org.hl7.fhir.r4.model.Location in project metacat by Netflix.

the class S3ConnectorInfoConverter method toAuditInfo.

/**
 * Creates audit info from s3 table info.
 * @param table table info
 * @return audit info
 */
public AuditInfo toAuditInfo(final Table table) {
    final AuditInfo result = AuditInfo.builder().createdDate(table.getCreatedDate()).lastModifiedDate(table.getLastUpdatedDate()).build();
    final Location location = table.getLocation();
    if (location != null) {
        final Info info = location.getInfo();
        if (info != null) {
            result.setCreatedBy(info.getOwner());
            result.setLastModifiedBy(info.getOwner());
        }
    }
    return result;
}

Example 4 with Location

use of org.hl7.fhir.r4.model.Location in project metacat by Netflix.

the class S3ConnectorInfoConverter method toLocation.

/**
 * Creates location.
 * @param tableInfo table info
 * @return location
 */
public Location toLocation(final TableInfo tableInfo) {
    final Location location = fromStorageInfo(tableInfo.getSerde());
    final Schema schema = new Schema();
    schema.setLocation(location);
    schema.setFields(toFields(tableInfo, schema));
    location.setSchema(schema);
    return location;
}

Example 5 with Location

use of org.hl7.fhir.r4.model.Location in project gpconnect-demonstrator by nhsconnect.

the class AppointmentResourceProvider method appointmentResourceConverterToAppointmentDetail.

/**
 * fhir resource Appointment to AppointmentDetail
 *
 * @param appointment Resource
 * @return populated AppointmentDetail
 */
private AppointmentDetail appointmentResourceConverterToAppointmentDetail(Appointment appointment) {
    appointmentValidation.validateAppointmentExtensions(appointment.getExtension());
    if (appointmentValidation.appointmentDescriptionTooLong(appointment)) {
        throwUnprocessableEntity422_InvalidResourceException("Appointment description cannot be greater then " + APPOINTMENT_DESCRIPTION_LENGTH + " characters");
    }
    AppointmentDetail appointmentDetail = new AppointmentDetail();
    Long id = appointment.getIdElement().getIdPartAsLong();
    appointmentDetail.setId(id);
    appointmentDetail.setLastUpdated(getLastUpdated(appointment.getMeta().getLastUpdated()));
    List<Extension> cnlExtension = appointment.getExtensionsByUrl(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON);
    if (cnlExtension != null && !cnlExtension.isEmpty()) {
        IBaseDatatype value = cnlExtension.get(0).getValue();
        if (null == value) {
            throwInvalidRequest400_BadRequestException("Cancellation reason missing.");
        }
        appointmentDetail.setCancellationReason(value.toString());
    }
    appointmentDetail.setStatus(appointment.getStatus().toString().toLowerCase(Locale.UK));
    appointmentDetail.setMinutesDuration(appointment.getMinutesDuration());
    appointmentDetail.setPriority(appointment.getPriority());
    appointmentDetail.setStartDateTime(appointment.getStart());
    appointmentDetail.setEndDateTime(appointment.getEnd());
    List<Long> slotIds = new ArrayList<>();
    for (Reference slotReference : appointment.getSlot()) {
        // #200 check slots for absolute references
        checkReferenceIsRelative(slotReference.getReference());
        try {
            String here = slotReference.getReference().substring("Slot/".length());
            Long slotId = new Long(here);
            slotIds.add(slotId);
        } catch (NumberFormatException ex) {
            throwUnprocessableEntity422_InvalidResourceException(String.format("The slot reference value data type for %s is not valid.", slotReference.getReference()));
        }
    }
    appointmentDetail.setSlotIds(slotIds);
    if (appointmentValidation.appointmentCommentTooLong(appointment)) {
        throwUnprocessableEntity422_InvalidResourceException("Appointment comment cannot be greater than " + APPOINTMENT_COMMENT_LENGTH + " characters");
    }
    appointmentDetail.setComment(appointment.getComment());
    appointmentDetail.setDescription(appointment.getDescription());
    for (AppointmentParticipantComponent participant : appointment.getParticipant()) {
        if (participant.getActor() != null) {
            String participantReference = participant.getActor().getReference();
            String actorIdString = participantReference.substring(participantReference.lastIndexOf("/") + 1);
            Long actorId;
            if (actorIdString.equals("null")) {
                actorId = null;
            } else {
                actorId = Long.valueOf(actorIdString);
            }
            if (participantReference.contains("Patient/")) {
                appointmentDetail.setPatientId(actorId);
            } else if (participantReference.contains("Practitioner/")) {
                appointmentDetail.setPractitionerId(actorId);
            } else if (participantReference.contains("Location/")) {
                appointmentDetail.setLocationId(actorId);
            }
        } else {
            throwUnprocessableEntity422_InvalidResourceException("Participant Actor cannot be null");
        }
    }
    if (appointment.getCreated() != null) {
        Date created = appointment.getCreated();
        appointmentDetail.setCreated(created);
    }
    // #200 check extensions for absolute references
    List<Extension> extensions = appointment.getExtension();
    for (Extension extension : extensions) {
        try {
            Reference reference = (Reference) extension.getValue();
            if (reference != null) {
                checkReferenceIsRelative(reference.getReference());
            }
        } catch (ClassCastException ex) {
        }
    }
    List<Resource> contained = appointment.getContained();
    if (contained != null && !contained.isEmpty()) {
        Resource org = contained.get(0);
        Organization bookingOrgRes = (Organization) org;
        BookingOrgDetail bookingOrgDetail = new BookingOrgDetail();
        appointmentValidation.validateBookingOrganizationValuesArePresent(bookingOrgRes);
        bookingOrgDetail.setName(bookingOrgRes.getName());
        // #198 add system and optional use type. Pick system phone if > 1 and available otherwise use the one supplied
        Iterator<ContactPoint> iter = bookingOrgRes.getTelecom().iterator();
        ContactPoint telecom = bookingOrgRes.getTelecomFirstRep();
        while (iter.hasNext()) {
            ContactPoint thisTelecom = iter.next();
            if (thisTelecom.getSystem() == ContactPoint.ContactPointSystem.PHONE) {
                telecom = thisTelecom;
                break;
            }
        }
        bookingOrgDetail.setTelephone(telecom.getValue());
        bookingOrgDetail.setSystem(telecom.getSystem().toString());
        if (telecom.getUse() != null && !telecom.getUse().toString().trim().isEmpty()) {
            bookingOrgDetail.setUsetype(telecom.getUse().toString());
        }
        if (!bookingOrgRes.getIdentifier().isEmpty()) {
            bookingOrgDetail.setOrgCode(bookingOrgRes.getIdentifierFirstRep().getValue());
            String system = bookingOrgRes.getIdentifierFirstRep().getSystem();
            // check that organization identifier system is https://fhir.nhs.uk/Id/ods-organization-code
            if (system != null && !system.trim().isEmpty()) {
                if (!system.equals(ID_ODS_ORGANIZATION_CODE)) {
                    throwUnprocessableEntity422_InvalidResourceException("Appointment organisation identifier system must be an ODS code!");
                }
            } else {
                throwUnprocessableEntity422_InvalidResourceException("Appointment organisation identifier system must be populated!");
            }
        }
        bookingOrgDetail.setAppointmentDetail(appointmentDetail);
        appointmentDetail.setBookingOrganization(bookingOrgDetail);
        // 1.2.7
        appointmentDetail.setServiceCategory(appointment.getServiceCategory().getText());
        appointmentDetail.setServiceType(appointment.getServiceTypeFirstRep().getText());
    }
    return appointmentDetail;
}