Examples with ResourceType org.hl7.fhir.r4.model.ResourceType used on opensource projects

Example 1 with ResourceType

use of org.hl7.fhir.r4.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class MedicationAdministrationResourceProvider method getMedicationAdministrationsForPatientId.

@Search
public List<MedicationAdministration> getMedicationAdministrationsForPatientId(@RequiredParam(name = "patient") String patientId) {
    ArrayList<MedicationAdministration> medicationAdministrations = new ArrayList<>();
    List<MedicationAdministrationDetail> medicationAdministrationDetailList = medicationAdministrationSearch.findMedicationAdministrationForPatient(Long.parseLong(patientId));
    if (medicationAdministrationDetailList != null && !medicationAdministrationDetailList.isEmpty()) {
        for (MedicationAdministrationDetail medicationAdministrationDetail : medicationAdministrationDetailList) {
            MedicationAdministration medicationAdministration = new MedicationAdministration();
            String resourceId = String.valueOf(medicationAdministrationDetail.getId());
            String versionId = String.valueOf(medicationAdministrationDetail.getLastUpdated().getTime());
            String resourceType = medicationAdministration.getResourceType().toString();
            IdType id = new IdType(resourceType, resourceId, versionId);
            medicationAdministration.setId(id);
            medicationAdministration.getMeta().setVersionId(versionId);
            medicationAdministration.getMeta().setLastUpdated(medicationAdministrationDetail.getLastUpdated());
            medicationAdministration.addDefinition(new Reference("Patient/" + medicationAdministrationDetail.getPatientId()));
            medicationAdministration.addDefinition(new Reference("Practitioner/" + medicationAdministrationDetail.getPractitionerId()));
            medicationAdministration.setPrescription(new Reference("MedicationOrder/" + medicationAdministrationDetail.getPrescriptionId()));
            medicationAdministration.setEffective(new DateType(medicationAdministrationDetail.getAdministrationDate()));
            medicationAdministration.setMedication(new Reference("Medication/" + medicationAdministrationDetail.getMedicationId()));
            medicationAdministrations.add(medicationAdministration);
        }
    }
    return medicationAdministrations;
}

Example 2 with ResourceType

use of org.hl7.fhir.r4.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class MedicationOrderResourceProvider method medicationOrderDetailsToMedicationOrderResourceConverter.

private MedicationRequest medicationOrderDetailsToMedicationOrderResourceConverter(MedicationOrderDetails medicationOrderDetails) {
    MedicationRequest medicationOrder = new MedicationRequest();
    String resourceId = String.valueOf(medicationOrderDetails.getId());
    String versionId = String.valueOf(medicationOrderDetails.getLastUpdated().getTime());
    String resourceType = medicationOrder.getResourceType().toString();
    IdType id = new IdType(resourceType, resourceId, versionId);
    medicationOrder.setId(id);
    medicationOrder.getMeta().setVersionId(versionId);
    medicationOrder.getMeta().setLastUpdated(medicationOrderDetails.getLastUpdated());
    switch(medicationOrderDetails.getOrderStatus().toLowerCase(Locale.UK)) {
        case "active":
            medicationOrder.setStatus(MedicationRequestStatus.ACTIVE);
            break;
        case "completed":
            medicationOrder.setStatus(MedicationRequestStatus.COMPLETED);
            break;
        case "draft":
            medicationOrder.setStatus(MedicationRequestStatus.DRAFT);
            break;
        case "entered_in_error":
            medicationOrder.setStatus(MedicationRequestStatus.ENTEREDINERROR);
            break;
        case "on_hold":
            medicationOrder.setStatus(MedicationRequestStatus.ONHOLD);
            break;
        case "stopped":
            medicationOrder.setStatus(MedicationRequestStatus.STOPPED);
            break;
    }
    if (medicationOrderDetails.getPatientId() != null) {
        medicationOrder.setSubject(new Reference("Patient/" + medicationOrderDetails.getPatientId()));
    } else {
        medicationOrder.setSubject(new Reference());
    }
    medicationOrder.setRecorder(new Reference("Practitioner/" + medicationOrderDetails.getAutherId()));
    medicationOrder.setMedication(new Reference("Medication/" + medicationOrderDetails.getMedicationId()));
    medicationOrder.addDosageInstruction().setText(medicationOrderDetails.getDosageText());
    MedicationRequestDispenseRequestComponent dispenseRequest = new MedicationRequestDispenseRequestComponent();
    dispenseRequest.addExtension(new Extension(SystemURL.SD_EXTENSION_MEDICATION_QUANTITY_TEXT, new StringDt(medicationOrderDetails.getDispenseQuantityText())));
    dispenseRequest.addExtension(new Extension(SystemURL.SD_EXTENSION_PERSCRIPTION_REPEAT_REVIEW_DATE, new DateTimeDt(medicationOrderDetails.getDispenseReviewDate())));
    dispenseRequest.setId("Medication/" + medicationOrderDetails.getDispenseMedicationId());
    dispenseRequest.setNumberOfRepeatsAllowed(medicationOrderDetails.getDispenseRepeatsAllowed());
    medicationOrder.setDispenseRequest(dispenseRequest);
    return medicationOrder;
}

Example 3 with ResourceType

use of org.hl7.fhir.r4.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class MedicationResourceProvider method getMedicationById.

@Read()
public Medication getMedicationById(@IdParam IdType medicationId) {
    MedicationEntity medicationEntity = medicationRepository.findOne(medicationId.getIdPartAsLong());
    if (medicationEntity == null) {
        OperationOutcome operationalOutcome = new OperationOutcome();
        operationalOutcome.addIssue().setSeverity(IssueSeverity.ERROR).setDiagnostics("No medication details found for ID: " + medicationId.getIdPart());
        throw new InternalErrorException("No medication details found for ID: " + medicationId.getIdPart(), operationalOutcome);
    }
    Medication medication = new Medication();
    String resourceId = String.valueOf(medicationEntity.getId());
    String versionId = String.valueOf(medicationEntity.getLastUpdated().getTime());
    String resourceType = medication.getResourceType().toString();
    IdType id = new IdType(resourceType, resourceId, versionId);
    medication.setId(id);
    medication.getMeta().setVersionId(versionId);
    medication.getMeta().setLastUpdated(medicationEntity.getLastUpdated());
    return medication;
}

Example 4 with ResourceType

use of org.hl7.fhir.r4.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class PractitionerResourceProvider method practitionerDetailsToPractitionerResourceConverter.

private Practitioner practitionerDetailsToPractitionerResourceConverter(PractitionerDetails practitionerDetails) {
    Identifier identifier = new Identifier().setSystem(SystemURL.ID_SDS_USER_ID).setValue(practitionerDetails.getUserId());
    Practitioner practitioner = new Practitioner().addIdentifier(identifier);
    practitionerDetails.getRoleIds().stream().distinct().map(roleId -> new Identifier().setSystem(SystemURL.ID_SDS_ROLE_PROFILE_ID).setValue(roleId)).forEach(practitioner::addIdentifier);
    String resourceId = String.valueOf(practitionerDetails.getId());
    String versionId = String.valueOf(practitionerDetails.getLastUpdated().getTime());
    String resourceType = practitioner.getResourceType().toString();
    IdType id = new IdType(resourceType, resourceId, versionId);
    practitioner.setId(id);
    practitioner.getMeta().setVersionId(versionId);
    practitioner.getMeta().setLastUpdated(practitionerDetails.getLastUpdated());
    practitioner.getMeta().addProfile(SystemURL.SD_GPC_PRACTITIONER);
    HumanName name = new HumanName().setFamily(practitionerDetails.getNameFamily()).addGiven(practitionerDetails.getNameGiven()).addPrefix(practitionerDetails.getNamePrefix()).setUse(NameUse.USUAL);
    practitioner.addName(name);
    switch(practitionerDetails.getGender().toLowerCase(Locale.UK)) {
        case "male":
            practitioner.setGender(AdministrativeGender.MALE);
            break;
        case "female":
            practitioner.setGender(AdministrativeGender.FEMALE);
            break;
        case "other":
            practitioner.setGender(AdministrativeGender.OTHER);
            break;
        default:
            practitioner.setGender(AdministrativeGender.UNKNOWN);
            break;
    }
    Coding roleCoding = new Coding(SystemURL.VS_SDS_JOB_ROLE_NAME, practitionerDetails.getRoleCode(), practitionerDetails.getRoleDisplay());
    for (int i = 0; i < practitionerDetails.getComCode().size(); i++) {
        Coding comCoding = new Coding(SystemURL.VS_HUMAN_LANGUAGE, practitionerDetails.getComCode().get(i), null).setDisplay(practitionerDetails.getComDisplay().get(i));
        practitioner.addCommunication().addCoding(comCoding);
    }
    return practitioner;
}

Example 5 with ResourceType

use of org.hl7.fhir.r4.model.ResourceType in project gpconnect-demonstrator by nhsconnect.

the class AppointmentResourceProvider method appointmentDetailToAppointmentResourceConverter.

/**
 * AppointmentDetail to fhir resource Appointment
 *
 * @param appointmentDetail
 * @return Appointment Resource
 */
private Appointment appointmentDetailToAppointmentResourceConverter(AppointmentDetail appointmentDetail) {
    Appointment appointment = new Appointment();
    String appointmentId = String.valueOf(appointmentDetail.getId());
    String versionId = String.valueOf(appointmentDetail.getLastUpdated().getTime());
    String resourceType = appointment.getResourceType().toString();
    IdType id = new IdType(resourceType, appointmentId, versionId);
    appointment.setId(id);
    appointment.getMeta().setVersionId(versionId);
    appointment.getMeta().setLastUpdated(appointmentDetail.getLastUpdated());
    appointment.getMeta().addProfile(SystemURL.SD_GPC_APPOINTMENT);
    Extension extension = new Extension(SystemURL.SD_EXTENSION_GPC_APPOINTMENT_CANCELLATION_REASON, new StringType(appointmentDetail.getCancellationReason()));
    appointment.addExtension(extension);
    // #157 derive delivery channel from slot
    List<Long> sids = appointmentDetail.getSlotIds();
    ScheduleDetail scheduleDetail = null;
    if (sids.size() > 0) {
        // get the first slot but it should not matter because for multi slot appts the deliveryChannel is always the same
        SlotDetail slotDetail = slotSearch.findSlotByID(sids.get(0));
        String deliveryChannel = slotDetail.getDeliveryChannelCode();
        if (deliveryChannel != null && !deliveryChannel.trim().isEmpty()) {
            Extension deliveryChannelExtension = new Extension(SystemURL.SD_EXTENSION_GPC_DELIVERY_CHANNEL, new CodeType(deliveryChannel));
            appointment.addExtension(deliveryChannelExtension);
        }
        scheduleDetail = scheduleSearch.findScheduleByID(slotDetail.getScheduleReference());
    }
    // practitioner role extension here
    // lookup the practitioner
    Long practitionerID = appointmentDetail.getPractitionerId();
    if (practitionerID != null) {
        // #195 we need to get this detail from the schedule not the practitioner table
        if (scheduleDetail != null) {
            Coding roleCoding = new Coding(SystemURL.VS_GPC_PRACTITIONER_ROLE, scheduleDetail.getPractitionerRoleCode(), scheduleDetail.getPractitionerRoleDisplay());
            Extension practitionerRoleExtension = new Extension(SystemURL.SD_EXTENSION_GPC_PRACTITIONER_ROLE, new CodeableConcept().addCoding(roleCoding));
            appointment.addExtension(practitionerRoleExtension);
        }
    }
    switch(appointmentDetail.getStatus().toLowerCase(Locale.UK)) {
        case "pending":
            appointment.setStatus(AppointmentStatus.PENDING);
            break;
        case "booked":
            appointment.setStatus(AppointmentStatus.BOOKED);
            break;
        case "arrived":
            appointment.setStatus(AppointmentStatus.ARRIVED);
            break;
        case "fulfilled":
            appointment.setStatus(AppointmentStatus.FULFILLED);
            break;
        case "cancelled":
            appointment.setStatus(AppointmentStatus.CANCELLED);
            break;
        case "noshow":
            appointment.setStatus(AppointmentStatus.NOSHOW);
            break;
        default:
            appointment.setStatus(AppointmentStatus.PENDING);
            break;
    }
    appointment.setStart(appointmentDetail.getStartDateTime());
    appointment.setEnd(appointmentDetail.getEndDateTime());
    // #218 Date time formats
    appointment.getStartElement().setPrecision(TemporalPrecisionEnum.SECOND);
    appointment.getEndElement().setPrecision(TemporalPrecisionEnum.SECOND);
    List<Reference> slotResources = new ArrayList<>();
    for (Long slotId : appointmentDetail.getSlotIds()) {
        slotResources.add(new Reference("Slot/" + slotId));
    }
    appointment.setSlot(slotResources);
    if (appointmentDetail.getPriority() != null) {
        appointment.setPriority(appointmentDetail.getPriority());
    }
    appointment.setComment(appointmentDetail.getComment());
    appointment.setDescription(appointmentDetail.getDescription());
    appointment.addParticipant().setActor(new Reference("Patient/" + appointmentDetail.getPatientId())).setStatus(ParticipationStatus.ACCEPTED);
    appointment.addParticipant().setActor(new Reference("Location/" + appointmentDetail.getLocationId())).setStatus(ParticipationStatus.ACCEPTED);
    if (null != appointmentDetail.getPractitionerId()) {
        appointment.addParticipant().setActor(new Reference("Practitioner/" + appointmentDetail.getPractitionerId())).setStatus(ParticipationStatus.ACCEPTED);
    }
    if (null != appointmentDetail.getCreated()) {
        appointment.setCreated(appointmentDetail.getCreated());
    }
    if (null != appointmentDetail.getBookingOrganization()) {
        // add extension with reference to contained item
        String reference = "#1";
        Reference orgRef = new Reference(reference);
        Extension bookingOrgExt = new Extension(SystemURL.SD_CC_APPOINTMENT_BOOKINGORG, orgRef);
        appointment.addExtension(bookingOrgExt);
        BookingOrgDetail bookingOrgDetail = appointmentDetail.getBookingOrganization();
        Organization bookingOrg = new Organization();
        bookingOrg.setId(reference);
        bookingOrg.getNameElement().setValue(bookingOrgDetail.getName());
        // #198 org phone now persists usetype and system
        ContactPoint orgTelecom = bookingOrg.getTelecomFirstRep();
        orgTelecom.setValue(bookingOrgDetail.getTelephone());
        try {
            orgTelecom.setSystem(ContactPointSystem.fromCode(bookingOrgDetail.getSystem().toLowerCase()));
            if (bookingOrgDetail.getUsetype() != null && !bookingOrgDetail.getUsetype().trim().isEmpty()) {
                orgTelecom.setUse(ContactPointUse.fromCode(bookingOrgDetail.getUsetype().toLowerCase()));
            }
        } catch (FHIRException ex) {
        // Logger.getLogger(AppointmentResourceProvider.class.getName()).log(Level.SEVERE, null, ex);
        }
        bookingOrg.getMeta().addProfile(SystemURL.SD_GPC_ORGANIZATION);
        if (null != bookingOrgDetail.getOrgCode()) {
            bookingOrg.getIdentifierFirstRep().setSystem(SystemURL.ID_ODS_ORGANIZATION_CODE).setValue(bookingOrgDetail.getOrgCode());
        }
        // add contained booking organization resource
        appointment.getContained().add(bookingOrg);
    }
    // if bookingOrganization
    appointment.setMinutesDuration(appointmentDetail.getMinutesDuration());
    // 1.2.7 set service category from schedule type description
    appointment.setServiceCategory(new CodeableConcept().setText(scheduleDetail.getTypeDescription()));
    // 1.2.7 set service type from slot type description
    appointment.addServiceType(new CodeableConcept().setText(slotSearch.findSlotByID(sids.get(0)).getTypeDisply()));
    return appointment;
}