Examples with FINISHED org.hl7.fhir.dstu3.model.Encounter.EncounterStatus.FINISHED used on opensource projects

Example 21 with FINISHED

use of org.hl7.fhir.dstu3.model.Encounter.EncounterStatus.FINISHED in project ab2d by CMSgov.

the class CoverageMappingCallable method call.

/**
 * Execute queries against BFD and collect enrollment result into a single object.
 *
 * In the past there have been significant issues related to the values of the enrollment returned by BFD.
 * These issues have led to adding a bunch of logs in here for most steps in the enrollment process.
 *
 * These logs include:
 *      - log each bundle received with the page number
 *      - listing all links to additional pages returned by BFD
 *      - log last page received
 *      - record statistics regarding potentially missing things like MBIs, beneficiary ids, distribution of reference
 *          years on the patient, and past reference years which are not expected.
 *
 * Steps
 *      - Set a unique id for the job as a header to BFD for monitoring purposes
 *      - Get the first page of enrollment results and process those results
 *      - Loop over the remaining pages of results and query until none are left
 *      - Add the results to the CoverageMapping object
 *      - Mark the search as completed
 *      - Log statistics concerning enrollment pulled
 *      - Remove the unique id header used for BFD
 *
 * @throws Exception on any failure, before the exception is thrown it will be logged
 */
@Trace(metricName = "EnrollmentRequest", dispatcher = true)
@Override
public CoverageMapping call() {
    int month = coverageMapping.getPeriod().getMonth();
    String contractNumber = coverageMapping.getContractNumber();
    final Set<Identifiers> patientIds = new HashSet<>();
    int bundleNo = 1;
    try {
        log.info("retrieving contract membership for ContractWorkerDto {}-{}-{} bundle #{}", contractNumber, this.year, month, bundleNo);
        BFDClient.BFD_BULK_JOB_ID.set(coverageMapping.getJobId());
        IBaseBundle bundle = getBundle(contractNumber, month, this.year);
        patientIds.addAll(extractAndFilter(bundle));
        String availableLinks = BundleUtils.getAvailableLinks(bundle);
        log.info("retrieving contract membership for ContractWorkerDto {}-{}-{} bundle #{}, available links {}", contractNumber, this.year, month, bundleNo, availableLinks);
        if (BundleUtils.getNextLink(bundle) == null) {
            log.info("retrieving contract membership for ContractWorkerDto {}-{}-{} bundle #{}, does not have a next link", contractNumber, this.year, month, bundleNo);
        }
        while (BundleUtils.getNextLink(bundle) != null) {
            bundleNo += 1;
            log.info("retrieving contract membership for ContractWorkerDto {}-{}-{} bundle #{}", contractNumber, this.year, month, bundleNo);
            bundle = bfdClient.requestNextBundleFromServer(version, bundle);
            availableLinks = BundleUtils.getAvailableLinksPretty(bundle);
            log.info("retrieving contract membership for ContractWorkerDto {}-{}-{} bundle #{}, available links {}", contractNumber, this.year, month, bundleNo, availableLinks);
            if (BundleUtils.getNextLink(bundle) == null) {
                log.info("retrieving contract membership for ContractWorkerDto {}-{}-{} bundle #{}, does not have a next link", contractNumber, this.year, month, bundleNo);
            }
            patientIds.addAll(extractAndFilter(bundle));
        }
        log.info("retrieving contract membership for ContractWorkerDto {}-{}-{}, #{} bundles received.", contractNumber, this.year, month, bundleNo);
        coverageMapping.addBeneficiaries(patientIds);
        log.debug("finished reading [{}] Set<Identifiers>resources", patientIds.size());
        coverageMapping.completed();
        return coverageMapping;
    } catch (Exception e) {
        log.error("Unable to get patient information for " + contractNumber + " for month " + month + " and year " + this.year, e);
        coverageMapping.failed();
        throw e;
    } finally {
        int total = patientIds.size() + missingReferenceYear + missingBeneId + pastReferenceYear;
        log.info("Search {}-{}-{} found {} distribution of reference years over a total of {} benes", contractNumber, this.year, month, referenceYears, total);
        log.info("Search {}-{}-{} discarded {} entries missing a reference year out of {}", contractNumber, this.year, month, missingReferenceYear, total);
        log.info("Search {}-{}-{} discarded {} entries with a reference year in the past out of {}", contractNumber, this.year, month, pastReferenceYear, total);
        log.info("Search {}-{}-{} discarded {} entries missing a beneficiary identifier out of {}", contractNumber, this.year, month, missingBeneId, total);
        log.info("Search {}-{}-{} found {} entries missing a current mbi out of {}", contractNumber, this.year, month, missingCurrentMbi, total);
        log.info("Search {}-{}-{} found {} entries with a historical mbi out of {}", contractNumber, this.year, month, hasHistoricalMbi, total);
        completed.set(true);
        BFDClient.BFD_BULK_JOB_ID.remove();
    }
}

Example 22 with FINISHED

use of org.hl7.fhir.dstu3.model.Encounter.EncounterStatus.FINISHED in project Gravity-SDOH-Exchange-RI by FHIR.

the class OurTaskPollingService method updateTasks.

@Scheduled(fixedDelayString = "${scheduling.task-polling-delay-millis}")
public void updateTasks() {
    log.info("Updating tasks from our tasks...");
    Bundle tasksBundle = openCpClient.search().forResource(Task.class).revInclude(Task.INCLUDE_BASED_ON).include(Task.INCLUDE_FOCUS.setRecurse(true)).and(Task.INTENT.exactly().code(Task.TaskIntent.ORDER.toCode())).where(new TokenClientParam(Task.SP_STATUS + ":" + SearchModifierCode.NOT.toCode()).exactly().code(TaskStatus.FAILED.toCode())).where(new TokenClientParam(Task.SP_STATUS + ":" + SearchModifierCode.NOT.toCode()).exactly().code(TaskStatus.REJECTED.toCode())).where(new TokenClientParam(Task.SP_STATUS + ":" + SearchModifierCode.NOT.toCode()).exactly().code(TaskStatus.COMPLETED.toCode())).where(new TokenClientParam(Task.SP_STATUS + ":" + SearchModifierCode.NOT.toCode()).exactly().code(TaskStatus.CANCELLED.toCode())).where(Task.AUTHORED_ON.before().millis(Date.from(LocalDateTime.now().minusSeconds(10).atZone(ZoneId.systemDefault()).toInstant()))).returnBundle(Bundle.class).execute();
    OurTasksPollingInfo tasksPollingInfo = new OurTasksPollingBundleExtractor().extract(tasksBundle);
    // Collect all entries from every Task bundle for performance considerations.
    Bundle updateBundle = new Bundle();
    updateBundle.setType(Bundle.BundleType.TRANSACTION);
    for (Task task : tasksPollingInfo.getTasks()) {
        // Skip for now. We create our tasks automatically when we set a status to Accepted.
        if (task.getStatus().equals(TaskStatus.REQUESTED) || task.getStatus().equals(TaskStatus.RECEIVED)) {
            continue;
        }
        ServiceRequest serviceRequest = getServiceRequest(task);
        try {
            Task ourTask = tasksPollingInfo.getOurTask(task);
            combineResult(updateBundle, getUpdateBundle(task, serviceRequest, ourTask));
        } catch (OurTaskPollingUpdateException exc) {
            combineResult(updateBundle, failTask(task, serviceRequest, exc.getMessage()));
        }
    }
    // If there is at least one bundle entry - execute a transaction request.
    if (updateBundle.getEntry().size() != 0) {
        log.info("One or more tasks were changed. Storing updates to CP...");
        openCpClient.transaction().withBundle(updateBundle).execute();
    }
    log.info("Task update process finished.");
}

Example 23 with FINISHED

use of org.hl7.fhir.dstu3.model.Encounter.EncounterStatus.FINISHED in project integration-adaptor-111 by nhsconnect.

the class EncounterMapper method mapEncounter.

public Encounter mapEncounter(POCDMT000002UK01ClinicalDocument1 clinicalDocument, List<PractitionerRole> authorPractitionerRoles, Optional<PractitionerRole> responsibleParty, Coding interaction) {
    Encounter encounter = new Encounter();
    encounter.setIdElement(resourceUtil.newRandomUuid());
    encounter.setStatus(FINISHED);
    encounter.setLocation(getLocationComponents(clinicalDocument));
    encounter.setPeriod(getPeriod(clinicalDocument));
    setType(encounter, interaction);
    setServiceProvider(encounter, clinicalDocument);
    setIdentifiers(encounter, clinicalDocument);
    setSubject(encounter, clinicalDocument);
    encounter.setParticipant(getEncounterParticipantComponents(clinicalDocument, authorPractitionerRoles, responsibleParty, encounter));
    setAppointment(encounter, clinicalDocument);
    setEncounterReasonAndType(encounter, clinicalDocument);
    return encounter;
}

Example 24 with FINISHED

use of org.hl7.fhir.dstu3.model.Encounter.EncounterStatus.FINISHED in project org.hl7.fhir.core by hapifhir.

the class BatchLoader method sendFile.

private static void sendFile(FHIRToolingClient client, File f, int size, IniFile ini) throws FHIRFormatError, FileNotFoundException, IOException {
    long ms = System.currentTimeMillis();
    System.out.print("Loading " + f.getName() + ".. ");
    IParser parser = f.getName().endsWith(".json") ? new JsonParser() : new XmlParser();
    Resource res = parser.parse(new FileInputStream(f));
    System.out.println("  done: (" + Long.toString(System.currentTimeMillis() - ms) + " ms)");
    if (res instanceof Bundle) {
        Bundle bnd = (Bundle) res;
        int cursor = ini.hasProperty("progress", f.getName()) ? ini.getIntegerProperty("progress", f.getName()) : 0;
        while (cursor < bnd.getEntry().size()) {
            Bundle bt = new Bundle();
            bt.setType(BundleType.BATCH);
            bt.setId(UUID.randomUUID().toString().toLowerCase());
            for (int i = cursor; i < Math.min(bnd.getEntry().size(), cursor + size); i++) {
                BundleEntryComponent be = bt.addEntry();
                be.setResource(bnd.getEntry().get(i).getResource());
                be.getRequest().setMethod(HTTPVerb.PUT);
                be.getRequest().setUrl(be.getResource().getResourceType().toString() + "/" + be.getResource().getId());
            }
            System.out.print(f.getName() + " (" + cursor + "/" + bnd.getEntry().size() + "): ");
            ms = System.currentTimeMillis();
            Bundle resp = client.transaction(bt);
            int ncursor = cursor + size;
            for (int i = 0; i < resp.getEntry().size(); i++) {
                BundleEntryComponent t = resp.getEntry().get(i);
                if (!t.getResponse().getStatus().startsWith("2")) {
                    System.out.println("failed status at " + Integer.toString(i) + ": " + t.getResponse().getStatus());
                    ncursor = cursor + i - 1;
                    break;
                }
            }
            cursor = ncursor;
            System.out.println("  .. done: (" + Long.toString(System.currentTimeMillis() - ms) + " ms) " + SimpleDateFormat.getInstance().format(new Date()));
            ini.setIntegerProperty("progress", f.getName(), cursor, null);
            ini.save();
        }
        ini.setBooleanProperty("finished", f.getName(), true, null);
        ini.save();
    } else {
        client.update(res);
        ini.setBooleanProperty("finished", f.getName(), true, null);
        ini.save();
    }
}

Example 25 with FINISHED

use of org.hl7.fhir.dstu3.model.Encounter.EncounterStatus.FINISHED in project org.hl7.fhir.core by hapifhir.

the class BatchLoader method sendFile.

private static void sendFile(FHIRToolingClient client, File f, int size, IniFile ini) throws FHIRFormatError, FileNotFoundException, IOException {
    long ms = System.currentTimeMillis();
    System.out.print("Loading " + f.getName() + ".. ");
    IParser parser = f.getName().endsWith(".json") ? new JsonParser() : new XmlParser();
    Resource res = parser.parse(new FileInputStream(f));
    System.out.println("  done: (" + Long.toString(System.currentTimeMillis() - ms) + " ms)");
    if (res instanceof Bundle) {
        Bundle bnd = (Bundle) res;
        int cursor = ini.hasProperty("progress", f.getName()) ? ini.getIntegerProperty("progress", f.getName()) : 0;
        while (cursor < bnd.getEntry().size()) {
            Bundle bt = new Bundle();
            bt.setType(BundleType.BATCH);
            bt.setId(UUID.randomUUID().toString().toLowerCase());
            for (int i = cursor; i < Math.min(bnd.getEntry().size(), cursor + size); i++) {
                if (i >= 0 && i < bnd.getEntry().size()) {
                    BundleEntryComponent be = bt.addEntry();
                    be.setResource(bnd.getEntry().get(i).getResource());
                    be.getRequest().setMethod(HTTPVerb.PUT);
                    be.getRequest().setUrl(be.getResource().getResourceType().toString() + "/" + be.getResource().getId());
                }
            }
            System.out.print(f.getName() + " (" + cursor + "/" + bnd.getEntry().size() + "): ");
            ms = System.currentTimeMillis();
            Bundle resp = client.transaction(bt);
            int ncursor = cursor + size;
            for (int i = 0; i < resp.getEntry().size(); i++) {
                BundleEntryComponent t = resp.getEntry().get(i);
                if (!t.getResponse().getStatus().startsWith("2")) {
                    System.out.println("failed status at " + Integer.toString(i) + ": " + t.getResponse().getStatus());
                    ncursor = cursor + i - 1;
                    break;
                }
            }
            cursor = ncursor;
            System.out.println("  .. done: (" + Long.toString(System.currentTimeMillis() - ms) + " ms) " + SimpleDateFormat.getInstance().format(new Date()));
            ini.setIntegerProperty("progress", f.getName(), cursor, null);
            ini.save();
        }
        ini.setBooleanProperty("finished", f.getName(), true, null);
        ini.save();
    } else {
        client.update(res);
        ini.setBooleanProperty("finished", f.getName(), true, null);
        ini.save();
    }
}