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Example 1 with Encounter

use of org.hl7.fhir.dstu3.model.Encounter in project beneficiary-fhir-data by CMSgov.

the class ExplanationOfBenefitResourceProviderIT method searchForEobsByExistingPatientWithOddPaging.

/**
 * Verifies that {@link ExplanationOfBenefitResourceProvider#findByPatient} works as expected for
 * a {@link Patient} that does exist in the DB, with paging. This test uses a count of 3 to verify
 * our code will not run into an IndexOutOfBoundsException on even bundle sizes.
 *
 * @throws FHIRException (indicates test failure)
 */
@Test
public void searchForEobsByExistingPatientWithOddPaging() throws FHIRException {
    List<Object> loadedRecords = ServerTestUtils.get().loadData(Arrays.asList(StaticRifResourceGroup.SAMPLE_A.getResources()));
    IGenericClient fhirClient = ServerTestUtils.get().createFhirClient();
    Beneficiary beneficiary = loadedRecords.stream().filter(r -> r instanceof Beneficiary).map(r -> (Beneficiary) r).findFirst().get();
    Bundle searchResults = fhirClient.search().forResource(ExplanationOfBenefit.class).where(ExplanationOfBenefit.PATIENT.hasId(TransformerUtils.buildPatientId(beneficiary))).count(3).returnBundle(Bundle.class).execute();
    assertNotNull(searchResults);
    assertEquals(3, searchResults.getEntry().size());
    /*
     * Verify that accessing all next links, eventually leading to the last page,
     * will not encounter an IndexOutOfBoundsException.
     */
    while (searchResults.getLink(Constants.LINK_NEXT) != null) {
        searchResults = fhirClient.loadPage().next(searchResults).execute();
        assertNotNull(searchResults);
        assertTrue(searchResults.hasEntry());
    }
}
Also used : Arrays(java.util.Arrays) Bundle(org.hl7.fhir.dstu3.model.Bundle) Date(java.util.Date) Constants(ca.uhn.fhir.rest.api.Constants) InpatientClaim(gov.cms.bfd.model.rif.InpatientClaim) DateTimeDt(ca.uhn.fhir.model.primitive.DateTimeDt) PartDEvent(gov.cms.bfd.model.rif.PartDEvent) SNFClaim(gov.cms.bfd.model.rif.SNFClaim) DateRangeParam(ca.uhn.fhir.rest.param.DateRangeParam) BeforeAll(org.junit.jupiter.api.BeforeAll) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) BeneficiaryHistory(gov.cms.bfd.model.rif.BeneficiaryHistory) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Triple(org.apache.commons.lang3.tuple.Triple) OutpatientClaim(gov.cms.bfd.model.rif.OutpatientClaim) IdDt(ca.uhn.fhir.model.primitive.IdDt) ExplanationOfBenefit(org.hl7.fhir.dstu3.model.ExplanationOfBenefit) InvalidRequestException(ca.uhn.fhir.rest.server.exceptions.InvalidRequestException) Instant(java.time.Instant) Collectors(java.util.stream.Collectors) Test(org.junit.jupiter.api.Test) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) List(java.util.List) TransformerConstants(gov.cms.bfd.server.war.commons.TransformerConstants) EntityManagerFactory(javax.persistence.EntityManagerFactory) Assertions.assertTrue(org.junit.jupiter.api.Assertions.assertTrue) CarrierClaim(gov.cms.bfd.model.rif.CarrierClaim) Optional(java.util.Optional) TokenAndListParam(ca.uhn.fhir.rest.param.TokenAndListParam) Assertions.assertThrows(org.junit.jupiter.api.Assertions.assertThrows) Assertions.assertNotNull(org.junit.jupiter.api.Assertions.assertNotNull) Assertions.assertNull(org.junit.jupiter.api.Assertions.assertNull) RequestHeaders(gov.cms.bfd.server.war.commons.RequestHeaders) IBaseBundle(org.hl7.fhir.instance.model.api.IBaseBundle) ArrayList(java.util.ArrayList) HHAClaim(gov.cms.bfd.model.rif.HHAClaim) PipelineTestUtils(gov.cms.bfd.pipeline.sharedutils.PipelineTestUtils) RequestDetails(ca.uhn.fhir.rest.api.server.RequestDetails) ImmutableList(com.google.common.collect.ImmutableList) ReferenceParam(ca.uhn.fhir.rest.param.ReferenceParam) DMEClaim(gov.cms.bfd.model.rif.DMEClaim) Assertions.assertEquals(org.junit.jupiter.api.Assertions.assertEquals) ResourceNotFoundException(ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException) StaticRifResourceGroup(gov.cms.bfd.model.rif.samples.StaticRifResourceGroup) ServerTestUtils(gov.cms.bfd.server.war.ServerTestUtils) StringClientParam(ca.uhn.fhir.rest.gclient.StringClientParam) CommonHeaders(gov.cms.bfd.server.war.commons.CommonHeaders) ImmutableTriple(org.apache.commons.lang3.tuple.ImmutableTriple) TokenClientParam(ca.uhn.fhir.rest.gclient.TokenClientParam) HospiceClaim(gov.cms.bfd.model.rif.HospiceClaim) EntityManager(javax.persistence.EntityManager) MedicareBeneficiaryIdHistory(gov.cms.bfd.model.rif.MedicareBeneficiaryIdHistory) AfterEach(org.junit.jupiter.api.AfterEach) ChronoUnit(java.time.temporal.ChronoUnit) Patient(org.hl7.fhir.dstu3.model.Patient) FHIRException(org.hl7.fhir.exceptions.FHIRException) IGenericClient(ca.uhn.fhir.rest.client.api.IGenericClient) Bundle(org.hl7.fhir.dstu3.model.Bundle) IBaseBundle(org.hl7.fhir.instance.model.api.IBaseBundle) Beneficiary(gov.cms.bfd.model.rif.Beneficiary) Test(org.junit.jupiter.api.Test)

Example 2 with Encounter

use of org.hl7.fhir.dstu3.model.Encounter in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7EncounterFHIRConversionTest method test_encounter_PV2segment_missing.

// Test messages with PV1 segment and no PV2 segment, and no serviceProvider provided
// Extension list should be empty and serviceProvider should be null
@ParameterizedTest
@ValueSource(strings = { "ADT^A01", /* "ADT^A02", "ADT^A03", "ADT^A04", */
"ADT^A08", // MDM messages are not tested here because they do not have PV2 segments
"OMP^O09", "ORU^R01", "RDE^O11", "RDE^O25", "VXU^V04" })
void test_encounter_PV2segment_missing(String message) {
    String hl7message = "MSH|^~\\&|WHI_LOAD_GENERATOR|IBM_TORONTO_LAB||IBM|20210330144208|8078780|" + message + "|MSGID_4e1c575f-6c6d-47b2-ab9f-829f20c96db2|T|2.3\n" + "EVN||20210330144208||ADT_EVENT|007|20210309140700\n" + "PID|1||0a8a1752-e336-43e1-bf7f-0c8f6f437ca3^^^MRN||Patient^Load^Generator||19690720|M|Patient^Alias^Generator|AA|9999^^CITY^STATE^ZIP^CAN|COUNTY|(866)845-0900||ENGLISH^ENGLISH|SIN|NONE|Account_0a8a1752-e336-43e1-bf7f-0c8f6f437ca3|123-456-7890|||N|BIRTH PLACE|N||||||N\n" + "PV1||I|^^^^^5642 Hilly Av||||2905^Doctor^Attending^M^IV^^M.D|5755^Doctor^Referring^^Sr|770542^Doctor^Consulting^Jr||||||||59367^Doctor^Admitting||Visit_0a3be81e-144b-4885-9b4e-c5cd33c8f038|||||||||||||||||||||||||20210407191342\n";
    Encounter encounter = ResourceUtils.getEncounter(ftv, hl7message);
    Narrative encText = encounter.getText();
    assertNull(encText.getStatus());
    assertThat(encText.getDiv().getChildNodes()).isEmpty();
    List<Extension> extensionList = encounter.getExtension();
    assertNotNull(extensionList);
    assertThat(extensionList).isEmpty();
    Reference serviceProvider = encounter.getServiceProvider();
    assertThat(serviceProvider).isNotNull();
    assertThat(serviceProvider.getReference()).isNull();
}
Also used : Extension(org.hl7.fhir.r4.model.Extension) Narrative(org.hl7.fhir.r4.model.Narrative) Reference(org.hl7.fhir.r4.model.Reference) Encounter(org.hl7.fhir.r4.model.Encounter) ValueSource(org.junit.jupiter.params.provider.ValueSource) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest)

Example 3 with Encounter

use of org.hl7.fhir.dstu3.model.Encounter in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7EncounterFHIRConversionTest method test_encounter_PV1_serviceProvider.

// Test for serviceProvider reference in messages with both PV1 and PV2 segments
// Part 2: Field PV2.23 is provided but no PV2.23.8; serviceProvider id should use backup field PV1.3.4.1
@ParameterizedTest
@ValueSource(strings = { "ADT^A01", /* "ADT^A02", "ADT^A03", "ADT^A04", */
"ADT^A08", // MDM messages are not tested here because they do not have PV2 segments
"OMP^O09", "ORU^R01", "RDE^O11", "RDE^O25", "VXU^V04" })
void test_encounter_PV1_serviceProvider(String message) {
    String hl7message = "MSH|^~\\&|TestSystem||TestTransformationAgent||20150502090000||" + message + "|controlID|P|2.6\r" + "EVN||20210330144208||ADT_EVENT|007|20210309140700\r" + "PID|1||0a8a1752-e336-43e1-bf7f-0c8f6f437ca3^^^MRN||Patient^Load^Generator||19690720|M|Patient^Alias^Generator|AA|9999^^CITY^STATE^ZIP^CAN|COUNTY|(866)845-0900||ENGLISH^ENGLISH|SIN|NONE|Account_0a8a1752-e336-43e1-bf7f-0c8f6f437ca3|123-456-7890|||N|BIRTH PLACE|N||||||N\r" + "PV1||I|^^^Toronto^^5642 Hilly Av||||2905^Doctor^Attending^M^IV^^M.D|5755^Doctor^Referring^^Sr|770542^Doctor^Consulting^Jr||||||||59367^Doctor^Admitting||Visit_0a3be81e-144b-4885-9b4e-c5cd33c8f038|||||||||||||||||||||||||20210407191342\r" + "PV2||TEL||||X-5546||20210330144208|20210309||||||||||||n|N|South Shore Hosptial Weymouth|||||||||N||||||\r";
    String json = ftv.convert(hl7message, OPTIONS);
    assertThat(json).isNotBlank();
    LOGGER.debug("FHIR json result:\n" + json);
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> encounterResource = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    assertThat(encounterResource).hasSize(1);
    Encounter encounter = ResourceUtils.getResourceEncounter(encounterResource.get(0), context);
    Reference serviceProvider = encounter.getServiceProvider();
    assertThat(serviceProvider).isNotNull();
    String providerString = serviceProvider.getReference();
    assertThat(providerString).isEqualTo("Organization/toronto");
    List<Resource> organizations = ResourceUtils.getResourceList(e, ResourceType.Organization);
    assertThat(organizations).hasSize(1);
    Organization orgResource = ResourceUtils.getResourceOrganization(organizations.get(0), context);
    assertThat(orgResource.getId()).isEqualTo(providerString);
    assertThat(orgResource.getName()).isEqualTo("South Shore Hosptial Weymouth");
    assertThat(orgResource.getIdentifier()).hasSize(1);
    // PV1.3.4.1
    assertThat(orgResource.getIdentifierFirstRep().getValue()).hasToString("Toronto");
    // Because ID is name based
    assertThat(orgResource.getIdentifierFirstRep().getSystem()).hasToString("urn:id:extID");
}
Also used : BundleEntryComponent(org.hl7.fhir.r4.model.Bundle.BundleEntryComponent) Organization(org.hl7.fhir.r4.model.Organization) Bundle(org.hl7.fhir.r4.model.Bundle) Reference(org.hl7.fhir.r4.model.Reference) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) Resource(org.hl7.fhir.r4.model.Resource) Encounter(org.hl7.fhir.r4.model.Encounter) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) ValueSource(org.junit.jupiter.params.provider.ValueSource) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest)

Example 4 with Encounter

use of org.hl7.fhir.dstu3.model.Encounter in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7EncounterFHIRConversionTest method testEncounterModeOfArrival.

@Test
void testEncounterModeOfArrival() {
    String hl7message = "MSH|^~\\&|PROSOLV|SENTARA|WHIA|IBM|20151008111200|S1|ADT^A01^ADT_A01|MSGID000001|T|2.6|10092|PRPA008|AL|AL|100|8859/1|ENGLISH|ARM|ARM5007\n" + "EVN|A04|20151008111200|20171013152901|O|OID1006|20171013153621|EVN1009\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1|1|E|SAN JOSE|A|10089|MILPITAS|2740^Torres^Callie|2913^Grey^Meredith^F|3065^Sloan^Mark^J|CAR|FOSTER CITY|AD|R|1|A4|VI|9052^Shepeard^Derek^|AH|10019181|FIC1002|IC|CC|CR|CO|20161012034052|60000|6|AC|GHBR|20160926054052|AC5678|45000|15000|D|20161016154413|DCD|SAN FRANCISCO|VEG|RE|O|AV|FREMONT|CALIFORNIA|20161013154626|20161014154634|10000|14000|2000|4000|POL8009|V|PHY6007\n" + "PV2|SAN BRUNO|AC4567|vomits|less equipped|purse|SAN MATEO|HO|20171014154626|20171018154634|4|3|DIAHHOREA|RSA456|20161013154626|Y|D|20191026001640|O|Y|1|F|Y|KAISER|AI|2|20161013154626|ED|20171018001900|20161013154626|10000|RR|Y|20171108002129|Y|Y|N|N|C^Car^HL70430\n";
    Encounter encounter = ResourceUtils.getEncounter(ftv, hl7message);
    List<Extension> extensionList = encounter.getExtension();
    assertNotNull(extensionList);
    assertThat(extensionList).hasSize(1);
    boolean extFound = false;
    for (Extension ext : extensionList) {
        if (ext.getUrl().equals("http://hl7.org/fhir/StructureDefinition/encounter-modeOfArrival")) {
            extFound = true;
            assertTrue(ext.getValue() instanceof Coding);
            Coding valueCoding = (Coding) ext.getValue();
            assertThat(valueCoding.getCode()).isEqualTo("C");
            assertThat(valueCoding.getDisplay()).isEqualTo("Car");
            assertThat(valueCoding.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0430");
            break;
        }
    }
    assertTrue(extFound, "modeOfArrival extension not found");
}
Also used : Extension(org.hl7.fhir.r4.model.Extension) Coding(org.hl7.fhir.r4.model.Coding) Encounter(org.hl7.fhir.r4.model.Encounter) Test(org.junit.jupiter.api.Test) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest)

Example 5 with Encounter

use of org.hl7.fhir.dstu3.model.Encounter in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7EncounterFHIRConversionTest method test_encounter_visitdescription_missing.

@Test
void test_encounter_visitdescription_missing() {
    String hl7message = "MSH|^~\\&|WHI_LOAD_GENERATOR|IBM_TORONTO_LAB||IBM|20210330144208|8078780|ADT^A01|MSGID_4e1c575f-6c6d-47b2-ab9f-829f20c96db2|T|2.3\n" + "EVN||20210330144208||ADT_EVENT|007|20210309140700\n" + "PID|1||0a8a1752-e336-43e1-bf7f-0c8f6f437ca3^^^MRN||Patient^Load^Generator||19690720|M|Patient^Alias^Generator|AA|9999^^CITY^STATE^ZIP^CAN|COUNTY|(866)845-0900||ENGLISH^ENGLISH|SIN|NONE|Account_0a8a1752-e336-43e1-bf7f-0c8f6f437ca3|123-456-7890|||N|BIRTH PLACE|N||||||N\n" + "PV1||I|^^^Toronto^^5642 Hilly Av||||2905^Doctor^Attending^M^IV^^M.D|5755^Doctor^Referring^^Sr|770542^Doctor^Consulting^Jr||||||||59367^Doctor^Admitting|S|Visit_0a3be81e-144b-4885-9b4e-c5cd33c8f038|||||||||||||||||||||||||20210407191342\n" + "PV2||TEL||||X-5546||20210330144208|20210309||||||||||||n|N|South Shore Hosptial Weymouth^SSHW^^^^^^SSH-WEYMOUTH|||||||||N||||||\n";
    String json = ftv.convert(hl7message, OPTIONS);
    assertThat(json).isNotBlank();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> patientResource = ResourceUtils.getResourceList(e, ResourceType.Patient);
    assertThat(patientResource).hasSize(1);
    List<Resource> encounterResource = ResourceUtils.getResourceList(e, ResourceType.Encounter);
    assertThat(encounterResource).hasSize(1);
    Encounter encounter = ResourceUtils.getResourceEncounter(encounterResource.get(0), context);
    // This assertion is to confirm that we do not get a type from PV1.18
    assertThat(encounter.hasType()).isFalse();
    Narrative encText = encounter.getText();
    assertNull(encText.getStatus());
    assertThat(encText.getDiv().getChildNodes()).isEmpty();
}
Also used : BundleEntryComponent(org.hl7.fhir.r4.model.Bundle.BundleEntryComponent) Narrative(org.hl7.fhir.r4.model.Narrative) Bundle(org.hl7.fhir.r4.model.Bundle) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) Resource(org.hl7.fhir.r4.model.Resource) Encounter(org.hl7.fhir.r4.model.Encounter) IBaseResource(org.hl7.fhir.instance.model.api.IBaseResource) Test(org.junit.jupiter.api.Test) ParameterizedTest(org.junit.jupiter.params.ParameterizedTest)

Aggregations

Test (org.junit.Test)238 Encounter (org.hl7.fhir.r4.model.Encounter)166 IBaseResource (org.hl7.fhir.instance.model.api.IBaseResource)100 Test (org.junit.jupiter.api.Test)93 BundleEntryComponent (org.hl7.fhir.r4.model.Bundle.BundleEntryComponent)87 MockHttpServletResponse (org.springframework.mock.web.MockHttpServletResponse)79 Reference (org.hl7.fhir.r4.model.Reference)71 IBundleProvider (ca.uhn.fhir.rest.api.server.IBundleProvider)66 ArrayList (java.util.ArrayList)64 Resource (org.hl7.fhir.r4.model.Resource)61 Bundle (org.hl7.fhir.r4.model.Bundle)60 Date (java.util.Date)57 Encounter (org.hl7.fhir.dstu3.model.Encounter)55 Coding (org.hl7.fhir.r4.model.Coding)51 SearchParameterMap (org.openmrs.module.fhir2.api.search.param.SearchParameterMap)49 Reference (org.hl7.fhir.dstu3.model.Reference)48 BaseModuleContextSensitiveTest (org.openmrs.test.BaseModuleContextSensitiveTest)43 CodeableConcept (org.hl7.fhir.r4.model.CodeableConcept)41 ParameterizedTest (org.junit.jupiter.params.ParameterizedTest)38 Complex (org.hl7.fhir.r4.utils.formats.Turtle.Complex)37