Examples with Immunization org.hl7.fhir.dstu3.model.Immunization used on opensource projects

Example 11 with Immunization

use of org.hl7.fhir.dstu3.model.Immunization in project hl7v2-fhir-converter by LinuxForHealth.

the class FHIRConverterTest method testCodingSystems.

@Test
/*
     * This tests some of coding systems of interest or potential problems
     */
void testCodingSystems() throws FHIRException {
    String hl7VUXmessageRep = "MSH|^~\\&|MYEHR2.5|RI88140101|KIDSNET_IFL|RIHEALTH|201305330||VXU^V04^VXU_V04|20130531RI881401010105|P|2.6|||AL|NE|764|ASCII||||||^4086::132:2A57:3C28^IPv6\r" + "EVN|A01|20130617154644||01\r" + "PID|1||12345678^^^MYEMR^MR||TestPatient^John|||M|\r" + "ORC|RE||197027|||||||^Clerk^Myron||MD67895^Pediatric^MARY^^^^MD^^RIA|||||RI2050\r" + // Test MVX
    "RXA|0|1|20130528|20130529|48^HIB PRP-T^CVX|0.5|ML^^ISO+||00^new immunization record^NIP001|^Sticker^Nurse|^^^RI2050||||33k2a|20131210|PMC^sanofi^MVX|||CP|A\r" + // Test HL70162 & HL70163
    "RXR|C28161^IM^NCIT^IM^INTRAMUSCULAR^HL70162|RT^right thigh^HL70163\r";
    String json = ftv.convert(hl7VUXmessageRep, OPTIONS);
    FHIRContext context = new FHIRContext();
    IBaseResource bundleResource = context.getParser().parseResource(json);
    assertThat(bundleResource).isNotNull();
    Bundle b = (Bundle) bundleResource;
    assertThat(b.getType()).isEqualTo(BundleType.COLLECTION);
    assertThat(b.getId()).isNotNull();
    List<BundleEntryComponent> e = b.getEntry();
    List<Resource> obsResource = e.stream().filter(v -> ResourceType.Immunization == v.getResource().getResourceType()).map(BundleEntryComponent::getResource).collect(Collectors.toList());
    assertThat(obsResource).hasSize(1);
    Immunization immunization = (Immunization) obsResource.get(0);
    // Check that organization identifier (MVX) has a system
    Organization org = (Organization) immunization.getManufacturer().getResource();
    List<Identifier> li = org.getIdentifier();
    Identifier ident = li.get(0);
    assertThat(ident.hasSystem()).isTrue();
    assertThat(ident.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/MVX");
    assertThat(ident.hasValue()).isTrue();
    assertThat(ident.getValue()).isEqualTo("PMC");
    // Check that route (HL70162) has a system
    CodeableConcept route = immunization.getRoute();
    assertThat(route.hasCoding()).isTrue();
    List<Coding> codings = route.getCoding();
    assertThat(codings.size()).isEqualTo(2);
    Coding coding = codings.get(0);
    // If the first one is not the one we want look at the second one.
    if (coding.getCode().contains("C28161")) {
        coding = codings.get(1);
    }
    assertThat(coding.hasSystem()).isTrue();
    assertThat(coding.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0162");
    // Check that site (HL70163) has a system
    CodeableConcept site = immunization.getSite();
    coding = site.getCodingFirstRep();
    assertThat(coding.hasSystem()).isTrue();
    assertThat(coding.getSystem()).isEqualTo("http://terminology.hl7.org/CodeSystem/v2-0163");
}

Example 12 with Immunization

use of org.hl7.fhir.dstu3.model.Immunization in project openmrs-module-fhir2 by openmrs.

the class FhirImmunizationServiceImplTest method updateImmunization_shouldUpdateImmunizationAccordingly.

@Test
public void updateImmunization_shouldUpdateImmunizationAccordingly() {
    // setup
    FhirContext ctx = FhirContext.forR4();
    IParser parser = ctx.newJsonParser();
    Immunization updatedImmunization = parser.parseResource(Immunization.class, "{\n" + "  \"resourceType\": \"Immunization\",\n" + "  \"id\": \"9353776b-dead-4588-8723-d687197d8438\",\n" + "  \"status\": \"completed\",\n" + "  \"vaccineCode\": {\n" + "    \"coding\": [\n" + "      {\n" + "        \"code\": \"d144d24f-6913-4b63-9660-a9108c2bebef\",\n" + "        \"display\": \"STAVUDINE LAMIVUDINE AND NEVIRAPINE\"\n" + "      }\n" + "    ]\n" + "  },\n" + "  \"patient\": {\n" + "    \"reference\": \"Patient/a7e04421-525f-442f-8138-05b619d16def\",\n" + "    \"type\": \"Patient\"\n" + "  },\n" + "  \"encounter\": {\n" + "    \"reference\": \"Encounter/7d8c1980-6b78-11e0-93c3-18a905e044dc\",\n" + "    \"type\": \"Encounter\"\n" + "  },\n" + "  \"occurrenceDateTime\": \"2020-07-08T20:30:00+02:00\",\n" + "  \"manufacturer\": {\n" + "    \"display\": \"Pharma Inc.\"\n" + "  },\n" + "  \"lotNumber\": \"YU765YT-1\",\n" + "  \"expirationDate\": \"2020-10-08\",\n" + "  \"performer\": [\n" + "    {\n" + "      \"actor\": {\n" + "        \"reference\": \"Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66\",\n" + "        \"type\": \"Practitioner\"\n" + "      }\n" + "    }\n" + "  ],\n" + "  \"protocolApplied\": [\n" + "    {\n" + "      \"doseNumberPositiveInt\": 4\n" + "    }\n" + "  ]\n" + "}");
    // replay
    Immunization savedImmunization = service.update("9353776b-dead-4588-8723-d687197d8438", updatedImmunization);
    Obs obs = obsService.getObsByUuid(savedImmunization.getId());
    // verify
    helper.validateImmunizationObsGroup(obs);
    assertObsCommons(obs, "a7e04421-525f-442f-8138-05b619d16def", "7d8c1980-6b78-11e0-93c3-18a905e044dc", "f9badd80-ab76-11e2-9e96-0800200c9a66");
    obs.getGroupMembers().forEach(o -> {
        assertObsCommons(o, "a7e04421-525f-442f-8138-05b619d16def", "7d8c1980-6b78-11e0-93c3-18a905e044dc", "f9badd80-ab76-11e2-9e96-0800200c9a66");
    });
    Map<String, Obs> members = helper.getObsMembersMap(obs);
    assertThat(members.get(CIEL_984).getValueCoded().getUuid(), is("d144d24f-6913-4b63-9660-a9108c2bebef"));
    assertThat(members.get(CIEL_1410).getValueDatetime(), equalTo(new DateTimeType("2020-07-08T20:30:00+02:00").getValue()));
    assertThat(members.get(CIEL_1418).getValueNumeric(), equalTo(4.0));
    assertThat(members.get(CIEL_1419).getValueText(), is("Pharma Inc."));
    assertThat(members.get(CIEL_1420).getValueText(), is("YU765YT-1"));
    assertThat(members.get(CIEL_165907).getValueDate(), equalTo(new DateType("2020-10-08").getValue()));
}

Example 13 with Immunization

use of org.hl7.fhir.dstu3.model.Immunization in project openmrs-module-fhir2 by openmrs.

the class FhirImmunizationServiceImplTest method searchImmunizations_shouldFetchImmunizationsByPatientIdentifier.

@Test
public void searchImmunizations_shouldFetchImmunizationsByPatientIdentifier() {
    // setup
    ReferenceAndListParam param = new ReferenceAndListParam();
    param.addValue(new ReferenceOrListParam().add(new ReferenceParam(SP_IDENTIFIER, "12345K")));
    // replay
    List<Immunization> immunizations = get(service.searchImmunizations(param, null));
    // verify (in chronological order)
    assertThat(immunizations.size(), is(2));
    {
        Immunization immunization = immunizations.get(0);
        Coding coding = immunization.getVaccineCode().getCoding().get(0);
        assertThat(coding.getDisplay(), is("STAVUDINE LAMIVUDINE AND NEVIRAPINE"));
        assertThat(coding.getCode(), is("d144d24f-6913-4b63-9660-a9108c2bebef"));
        assertThat(immunization.getPatient().getReference(), is("Patient/a7e04421-525f-442f-8138-05b619d16def"));
        assertThat(immunization.getPatient().getType(), is(PATIENT));
        assertThat(immunization.getEncounter().getReference(), is("Encounter/7d8c1980-6b78-11e0-93c3-18a905e044dc"));
        assertThat(immunization.getEncounter().getType(), is(ENCOUNTER));
        assertThat(immunization.getOccurrenceDateTimeType().getValue().toString(), is("2020-07-08 20:30:00.0"));
        assertThat(immunization.getManufacturer().getDisplay(), is("Pharma Inc."));
        assertThat(immunization.getLotNumber(), is("YU765YT"));
        assertThat(immunization.getExpirationDate().toString(), is("2022-01-01 12:00:00.0"));
        assertThat(immunization.getPerformer().size(), is(1));
        assertThat(immunization.getPerformer().get(0).getActor().getReference(), is("Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66"));
        assertThat(immunization.getPerformer().get(0).getActor().getType(), is(PRACTITIONER));
        assertThat(immunization.getProtocolApplied().size(), is(1));
        assertThat(immunization.getProtocolApplied().get(0).getDoseNumberPositiveIntType().getValue(), is(3));
    }
    {
        Immunization immunization = immunizations.get(1);
        Coding coding = immunization.getVaccineCode().getCoding().get(0);
        assertThat(coding.getDisplay(), is("COUGH SYRUP"));
        assertThat(coding.getCode(), is("0cbe2ed3-cd5f-4f46-9459-26127c9265ab"));
        assertThat(immunization.getPatient().getReference(), is("Patient/a7e04421-525f-442f-8138-05b619d16def"));
        assertThat(immunization.getPatient().getType(), is(PATIENT));
        assertThat(immunization.getEncounter().getReference(), is("Encounter/7d8c1980-6b78-11e0-93c3-18a905e044dc"));
        assertThat(immunization.getEncounter().getType(), is(ENCOUNTER));
        assertThat(immunization.getOccurrenceDateTimeType().getValue().toString(), is("2020-06-08 20:30:00.0"));
        assertThat(immunization.getManufacturer().getDisplay(), is("Biotech Ltd"));
        assertThat(immunization.getLotNumber(), is("WV654XU"));
        assertThat(immunization.getExpirationDate().toString(), is("2023-01-01 12:00:00.0"));
        assertThat(immunization.getPerformer().size(), is(1));
        assertThat(immunization.getPerformer().get(0).getActor().getReference(), is("Practitioner/f9badd80-ab76-11e2-9e96-0800200c9a66"));
        assertThat(immunization.getPerformer().get(0).getActor().getType(), is(PRACTITIONER));
        assertThat(immunization.getProtocolApplied().size(), is(1));
        assertThat(immunization.getProtocolApplied().get(0).getDoseNumberPositiveIntType().getValue(), is(11));
    }
}

Example 14 with Immunization

use of org.hl7.fhir.dstu3.model.Immunization in project openmrs-module-fhir2 by openmrs.

the class ImmunizationFhirResourceProviderTest method updateImmunization_shouldThrowInvalidRequestExceptionForMissingId.

@Test(expected = InvalidRequestException.class)
public void updateImmunization_shouldThrowInvalidRequestExceptionForMissingId() {
    Immunization noIdImmunization = new Immunization();
    when(immunizationService.update(IMMUNIZATION_UUID, noIdImmunization)).thenThrow(InvalidRequestException.class);
    resourceProvider.updateImmunization(new IdType().setValue(IMMUNIZATION_UUID), noIdImmunization);
}

Example 15 with Immunization

use of org.hl7.fhir.dstu3.model.Immunization in project openmrs-module-fhir2 by openmrs.

the class ImmunizationFhirResourceProviderTest method searchImmunizations_shouldReturnMatchingImmunizationsWhenPatientParamIsSpecified.

@Test
public void searchImmunizations_shouldReturnMatchingImmunizationsWhenPatientParamIsSpecified() {
    ReferenceAndListParam patient = new ReferenceAndListParam();
    patient.addValue(new ReferenceOrListParam().add(new ReferenceParam(Immunization.SP_PATIENT, "John")));
    when(immunizationService.searchImmunizations(any(), any())).thenReturn(new MockIBundleProvider<>(Collections.singletonList(immunization), 10, 1));
    IBundleProvider result = resourceProvider.searchImmunizations(patient, null);
    List<IBaseResource> resources = getResources(result, 1, 0);
    assertThat(result, notNullValue());
    assertThat(resources, hasSize(equalTo(1)));
    assertThat(resources.get(0), notNullValue());
    assertThat(resources.get(0).fhirType(), equalTo(FhirConstants.IMMUNIZATION));
    assertThat(resources.get(0).getIdElement().getIdPart(), equalTo(IMMUNIZATION_UUID));
}