Examples with MetadataResource org.hl7.fhir.dstu3.model.MetadataResource used on opensource projects

Example 16 with MetadataResource

use of org.hl7.fhir.dstu3.model.MetadataResource in project org.hl7.fhir.core by hapifhir.

the class BaseWorkerContext method cacheResource.

public void cacheResource(Resource r) throws FHIRException {
    synchronized (lock) {
        Map<String, Resource> map = allResourcesById.get(r.fhirType());
        if (map == null) {
            map = new HashMap<String, Resource>();
            allResourcesById.put(r.fhirType(), map);
        }
        map.put(r.getId(), r);
        if (r instanceof MetadataResource) {
            MetadataResource m = (MetadataResource) r;
            String url = m.getUrl();
            if (!allowLoadingDuplicates && hasResource(r.getClass(), url))
                throw new DefinitionException("Duplicate Resource " + url);
            if (r instanceof StructureDefinition)
                seeMetadataResource((StructureDefinition) m, structures, false);
            else if (r instanceof ValueSet)
                seeMetadataResource((ValueSet) m, valueSets, false);
            else if (r instanceof CodeSystem)
                seeMetadataResource((CodeSystem) m, codeSystems, false);
            else if (r instanceof ImplementationGuide)
                seeMetadataResource((ImplementationGuide) m, guides, false);
            else if (r instanceof CapabilityStatement)
                seeMetadataResource((CapabilityStatement) m, capstmts, false);
            else if (r instanceof SearchParameter)
                seeMetadataResource((SearchParameter) m, searchParameters, false);
            else if (r instanceof PlanDefinition)
                seeMetadataResource((PlanDefinition) m, plans, false);
            else if (r instanceof OperationDefinition)
                seeMetadataResource((OperationDefinition) m, operations, false);
            else if (r instanceof Questionnaire)
                seeMetadataResource((Questionnaire) m, questionnaires, true);
            else if (r instanceof ConceptMap)
                seeMetadataResource((ConceptMap) m, maps, false);
            else if (r instanceof StructureMap)
                seeMetadataResource((StructureMap) m, transforms, false);
            else if (r instanceof NamingSystem)
                systems.add((NamingSystem) r);
        }
    }
}

Example 17 with MetadataResource

use of org.hl7.fhir.dstu3.model.MetadataResource in project org.hl7.fhir.core by hapifhir.

the class SimpleWorkerContext method loadFromFile.

public void loadFromFile(InputStream stream, String name, IContextResourceLoader loader) throws IOException, FHIRException {
    Resource f;
    try {
        if (loader != null)
            f = loader.loadBundle(stream, false);
        else {
            XmlParser xml = new XmlParser();
            f = xml.parse(stream);
        }
    } catch (DataFormatException e1) {
        throw new org.hl7.fhir.exceptions.FHIRFormatError("Error parsing " + name + ":" + e1.getMessage(), e1);
    } catch (Exception e1) {
        throw new org.hl7.fhir.exceptions.FHIRFormatError("Error parsing " + name + ":" + e1.getMessage(), e1);
    }
    if (f instanceof Bundle) {
        Bundle bnd = (Bundle) f;
        for (BundleEntryComponent e : bnd.getEntry()) {
            if (e.getFullUrl() == null) {
                logger.logDebugMessage(LogCategory.CONTEXT, "unidentified resource in " + name + " (no fullUrl)");
            }
            seeResource(e.getFullUrl(), e.getResource());
        }
    } else if (f instanceof MetadataResource) {
        MetadataResource m = (MetadataResource) f;
        seeResource(m.getUrl(), m);
    }
}

Example 18 with MetadataResource

use of org.hl7.fhir.dstu3.model.MetadataResource in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method findReleventMaps.

private List<UsedConceptMap> findReleventMaps(ValueSet vs) throws FHIRException {
    List<UsedConceptMap> res = new ArrayList<UsedConceptMap>();
    for (MetadataResource md : context.allConformanceResources()) {
        if (md instanceof ConceptMap) {
            ConceptMap cm = (ConceptMap) md;
            if (isSource(vs, cm.getSource())) {
                ConceptMapRenderInstructions re = findByTarget(cm.getTarget());
                if (re != null) {
                    ValueSet vst = cm.hasTarget() ? context.fetchResource(ValueSet.class, cm.hasTargetCanonicalType() ? cm.getTargetCanonicalType().getValue() : cm.getTargetUriType().asStringValue()) : null;
                    res.add(new UsedConceptMap(re, vst == null ? cm.getUserString("path") : vst.getUserString("path"), cm));
                }
            }
        }
    }
    return res;
// Map<ConceptMap, String> mymaps = new HashMap<ConceptMap, String>();
// for (ConceptMap a : context.findMapsForSource(vs.getUrl())) {
// String url = "";
// ValueSet vsr = context.fetchResource(ValueSet.class, ((Reference) a.getTarget()).getReference());
// if (vsr != null)
// url = (String) vsr.getUserData("filename");
// mymaps.put(a, url);
// }
// Map<ConceptMap, String> mymaps = new HashMap<ConceptMap, String>();
// for (ConceptMap a : context.findMapsForSource(cs.getValueSet())) {
// String url = "";
// ValueSet vsr = context.fetchResource(ValueSet.class, ((Reference) a.getTarget()).getReference());
// if (vsr != null)
// url = (String) vsr.getUserData("filename");
// mymaps.put(a, url);
// }
// also, look in the contained resources for a concept map
// for (Resource r : cs.getContained()) {
// if (r instanceof ConceptMap) {
// ConceptMap cm = (ConceptMap) r;
// if (((Reference) cm.getSource()).getReference().equals(cs.getValueSet())) {
// String url = "";
// ValueSet vsr = context.fetchResource(ValueSet.class, ((Reference) cm.getTarget()).getReference());
// if (vsr != null)
// url = (String) vsr.getUserData("filename");
// mymaps.put(cm, url);
// }
// }
// }
}

Example 19 with MetadataResource

use of org.hl7.fhir.dstu3.model.MetadataResource in project org.hl7.fhir.core by hapifhir.

the class Unbundler method unbundle.

private static void unbundle(String src) throws FHIRFormatError, FileNotFoundException, IOException {
    String folder = Utilities.getDirectoryForFile(src);
    Bundle bnd = (Bundle) new JsonParser().parse(new FileInputStream(src));
    for (BundleEntryComponent be : bnd.getEntry()) {
        Resource r = be.getResource();
        if (r != null) {
            if (StringUtils.isBlank(r.getId())) {
                if (r instanceof MetadataResource)
                    r.setId(tail((MetadataResource) r));
            }
            if (!StringUtils.isBlank(r.getId())) {
                String tgt = Utilities.path(folder, r.fhirType() + "-" + r.getId() + ".json");
                if (!new File(tgt).exists())
                    new JsonParser().compose(new FileOutputStream(tgt), r);
            }
        }
    }
}