use of org.hl7.fhir.dstu3.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.
the class LibraryRenderer method renderArtifact.
private void renderArtifact(XhtmlNode t, RelatedArtifact ra, Resource lib, boolean label, boolean display, boolean citation) throws IOException {
XhtmlNode tr = t.tr();
tr.td().tx(ra.getType().getDisplay());
if (label) {
tr.td().tx(ra.getLabel());
}
if (display) {
tr.td().tx(ra.getDisplay());
}
if (citation) {
tr.td().markdown(ra.getCitation(), "Citation");
}
if (ra.hasResource()) {
renderCanonical(lib, tr.td(), ra.getResource());
} else {
renderAttachment(tr.td(), ra.getDocument(), false, 0, lib.getId());
}
}
use of org.hl7.fhir.dstu3.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.
the class LibraryRenderer method render.
public boolean render(XhtmlNode x, Library lib) throws FHIRFormatError, DefinitionException, IOException {
if (lib.hasAuthor() || lib.hasEditor() || lib.hasReviewer() || lib.hasEndorser()) {
boolean email = hasCT(lib.getAuthor(), "email") || hasCT(lib.getEditor(), "email") || hasCT(lib.getReviewer(), "email") || hasCT(lib.getEndorser(), "email");
boolean phone = hasCT(lib.getAuthor(), "phone") || hasCT(lib.getEditor(), "phone") || hasCT(lib.getReviewer(), "phone") || hasCT(lib.getEndorser(), "phone");
boolean url = hasCT(lib.getAuthor(), "url") || hasCT(lib.getEditor(), "url") || hasCT(lib.getReviewer(), "url") || hasCT(lib.getEndorser(), "url");
x.h2().tx("Participants");
XhtmlNode t = x.table("grid");
for (ContactDetail cd : lib.getAuthor()) {
participantRow(t, "Author", cd, email, phone, url);
}
for (ContactDetail cd : lib.getEditor()) {
participantRow(t, "Editor", cd, email, phone, url);
}
for (ContactDetail cd : lib.getReviewer()) {
participantRow(t, "Reviewer", cd, email, phone, url);
}
for (ContactDetail cd : lib.getEndorser()) {
participantRow(t, "Endorser", cd, email, phone, url);
}
}
if (lib.hasRelatedArtifact()) {
x.h2().tx("Related Artifacts");
XhtmlNode t = x.table("grid");
boolean label = false;
boolean display = false;
boolean citation = false;
for (RelatedArtifact ra : lib.getRelatedArtifact()) {
label = label || ra.hasLabel();
display = display || ra.hasDisplay();
citation = citation || ra.hasCitation();
}
for (RelatedArtifact ra : lib.getRelatedArtifact()) {
renderArtifact(t, ra, lib, label, display, citation);
}
}
if (lib.hasParameter()) {
x.h2().tx("Parameters");
XhtmlNode t = x.table("grid");
boolean doco = false;
for (ParameterDefinition p : lib.getParameter()) {
doco = doco || p.hasDocumentation();
}
for (ParameterDefinition p : lib.getParameter()) {
renderParameter(t, p, doco);
}
}
if (lib.hasDataRequirement()) {
x.h2().tx("Data Requirements");
for (DataRequirement p : lib.getDataRequirement()) {
renderDataRequirement(x, p);
}
}
if (lib.hasContent()) {
x.h2().tx("Contents");
boolean isCql = false;
int counter = 0;
for (Attachment att : lib.getContent()) {
renderAttachment(x, att, isCql, counter, lib.getId());
isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
counter++;
}
}
return false;
}
use of org.hl7.fhir.dstu3.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.
the class LibraryRenderer method render.
public boolean render(XhtmlNode x, Library lib) throws FHIRFormatError, DefinitionException, IOException {
if (lib.hasAuthor() || lib.hasEditor() || lib.hasReviewer() || lib.hasEndorser()) {
boolean email = hasCT(lib.getAuthor(), "email") || hasCT(lib.getEditor(), "email") || hasCT(lib.getReviewer(), "email") || hasCT(lib.getEndorser(), "email");
boolean phone = hasCT(lib.getAuthor(), "phone") || hasCT(lib.getEditor(), "phone") || hasCT(lib.getReviewer(), "phone") || hasCT(lib.getEndorser(), "phone");
boolean url = hasCT(lib.getAuthor(), "url") || hasCT(lib.getEditor(), "url") || hasCT(lib.getReviewer(), "url") || hasCT(lib.getEndorser(), "url");
x.h2().tx("Participants");
XhtmlNode t = x.table("grid");
for (ContactDetail cd : lib.getAuthor()) {
participantRow(t, "Author", cd, email, phone, url);
}
for (ContactDetail cd : lib.getEditor()) {
participantRow(t, "Editor", cd, email, phone, url);
}
for (ContactDetail cd : lib.getReviewer()) {
participantRow(t, "Reviewer", cd, email, phone, url);
}
for (ContactDetail cd : lib.getEndorser()) {
participantRow(t, "Endorser", cd, email, phone, url);
}
}
if (lib.hasRelatedArtifact()) {
x.h2().tx("Related Artifacts");
XhtmlNode t = x.table("grid");
boolean label = false;
boolean display = false;
boolean citation = false;
for (RelatedArtifact ra : lib.getRelatedArtifact()) {
label = label || ra.hasLabel();
display = display || ra.hasDisplay();
citation = citation || ra.hasCitation();
}
for (RelatedArtifact ra : lib.getRelatedArtifact()) {
renderArtifact(t, ra, lib, label, display, citation);
}
}
if (lib.hasParameter()) {
x.h2().tx("Parameters");
XhtmlNode t = x.table("grid");
boolean doco = false;
for (ParameterDefinition p : lib.getParameter()) {
doco = doco || p.hasDocumentation();
}
for (ParameterDefinition p : lib.getParameter()) {
renderParameter(t, p, doco);
}
}
if (lib.hasDataRequirement()) {
x.h2().tx("Data Requirements");
for (DataRequirement p : lib.getDataRequirement()) {
renderDataRequirement(x, p);
}
}
if (lib.hasContent()) {
x.h2().tx("Contents");
boolean isCql = false;
int counter = 0;
for (Attachment att : lib.getContent()) {
renderAttachment(x, att, isCql, counter, lib.getId());
isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
counter++;
}
}
return false;
}
use of org.hl7.fhir.dstu3.model.RelatedArtifact in project org.hl7.fhir.core by hapifhir.
the class LibraryRenderer method render.
public boolean render(XhtmlNode x, ResourceWrapper lib) throws FHIRFormatError, DefinitionException, IOException {
PropertyWrapper authors = lib.getChildByName("author");
PropertyWrapper editors = lib.getChildByName("editor");
PropertyWrapper reviewers = lib.getChildByName("reviewer");
PropertyWrapper endorsers = lib.getChildByName("endorser");
if ((authors != null && authors.hasValues()) || (editors != null && editors.hasValues()) || (reviewers != null && reviewers.hasValues()) || (endorsers != null && endorsers.hasValues())) {
boolean email = hasCT(authors, "email") || hasCT(editors, "email") || hasCT(reviewers, "email") || hasCT(endorsers, "email");
boolean phone = hasCT(authors, "phone") || hasCT(editors, "phone") || hasCT(reviewers, "phone") || hasCT(endorsers, "phone");
boolean url = hasCT(authors, "url") || hasCT(editors, "url") || hasCT(reviewers, "url") || hasCT(endorsers, "url");
x.h2().tx("Participants");
XhtmlNode t = x.table("grid");
if (authors != null) {
for (BaseWrapper cd : authors.getValues()) {
participantRow(t, "Author", cd, email, phone, url);
}
}
if (authors != null) {
for (BaseWrapper cd : editors.getValues()) {
participantRow(t, "Editor", cd, email, phone, url);
}
}
if (authors != null) {
for (BaseWrapper cd : reviewers.getValues()) {
participantRow(t, "Reviewer", cd, email, phone, url);
}
}
if (authors != null) {
for (BaseWrapper cd : endorsers.getValues()) {
participantRow(t, "Endorser", cd, email, phone, url);
}
}
}
PropertyWrapper artifacts = lib.getChildByName("relatedArtifact");
if (artifacts != null && artifacts.hasValues()) {
x.h2().tx("Related Artifacts");
XhtmlNode t = x.table("grid");
boolean label = false;
boolean display = false;
boolean citation = false;
for (BaseWrapper ra : artifacts.getValues()) {
label = label || ra.has("label");
display = display || ra.has("display");
citation = citation || ra.has("citation");
}
for (BaseWrapper ra : artifacts.getValues()) {
renderArtifact(t, ra, lib, label, display, citation);
}
}
PropertyWrapper parameters = lib.getChildByName("parameter");
if (parameters != null && parameters.hasValues()) {
x.h2().tx("Parameters");
XhtmlNode t = x.table("grid");
boolean doco = false;
for (BaseWrapper p : parameters.getValues()) {
doco = doco || p.has("documentation");
}
for (BaseWrapper p : parameters.getValues()) {
renderParameter(t, p, doco);
}
}
PropertyWrapper dataRequirements = lib.getChildByName("dataRequirement");
if (dataRequirements != null && dataRequirements.hasValues()) {
x.h2().tx("Data Requirements");
for (BaseWrapper p : dataRequirements.getValues()) {
renderDataRequirement(x, (DataRequirement) p.getBase());
}
}
PropertyWrapper contents = lib.getChildByName("content");
if (contents != null) {
x.h2().tx("Contents");
boolean isCql = false;
int counter = 0;
for (BaseWrapper p : contents.getValues()) {
Attachment att = (Attachment) p.getBase();
renderAttachment(x, att, isCql, counter, lib.getId());
isCql = isCql || (att.hasContentType() && att.getContentType().startsWith("text/cql"));
counter++;
}
}
return false;
}
use of org.hl7.fhir.dstu3.model.RelatedArtifact in project clinical_quality_language by cqframework.
the class DataRequirementsProcessorTest method TestDataRequirementsProcessorWithExpressions.
@Test
public void TestDataRequirementsProcessorWithExpressions() {
CqlTranslatorOptions cqlTranslatorOptions = new CqlTranslatorOptions();
cqlTranslatorOptions.getFormats().add(CqlTranslator.Format.JSON);
try {
Set<String> expressions = new HashSet<>();
// TODO - add expressions to expressions
// Active Ambulatory Opioid Rx");
expressions.add("Conditions Indicating End of Life or With Limited Life Expectancy");
CqlTranslator translator = createTranslator("OpioidCDS/cql/OpioidCDSCommon.cql", cqlTranslatorOptions);
translator.toELM();
assertTrue(translator.getErrors().isEmpty());
libraryManager.cacheLibrary(translator.getTranslatedLibrary());
DataRequirementsProcessor dqReqTrans = new DataRequirementsProcessor();
org.hl7.fhir.r5.model.Library moduleDefinitionLibrary = dqReqTrans.gatherDataRequirements(libraryManager, translator.getTranslatedLibrary(), cqlTranslatorOptions, expressions, false);
assertTrue(moduleDefinitionLibrary.getType().getCode("http://terminology.hl7.org/CodeSystem/library-type").equalsIgnoreCase("module-definition"));
List<Extension> directReferenceCodes = moduleDefinitionLibrary.getExtensionsByUrl("http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-directReferenceCode");
assertTrue(directReferenceCodes.size() == 4);
Extension directReferenceCode = directReferenceCodes.get(0);
Coding coding = directReferenceCode.getValueCoding();
assertEquals("http://hl7.org/fhir/condition-category", coding.getSystem());
assertEquals("encounter-diagnosis", coding.getCode());
assertEquals("Encounter Diagnosis", coding.getDisplay());
assertTrue(moduleDefinitionLibrary.getRelatedArtifact().size() == 6);
RelatedArtifact conditionCategoryCodes = null;
for (RelatedArtifact relatedArtifact : moduleDefinitionLibrary.getRelatedArtifact()) {
if (relatedArtifact.getType() == RelatedArtifact.RelatedArtifactType.DEPENDSON && relatedArtifact.getResource() != null && relatedArtifact.getResource().equals("http://hl7.org/fhir/condition-category")) {
conditionCategoryCodes = relatedArtifact;
break;
}
}
assertTrue(conditionCategoryCodes != null);
assertTrue(moduleDefinitionLibrary.getParameter().size() == 1);
ParameterDefinition conditionsIndicatingEndOfLife = null;
for (ParameterDefinition parameter : moduleDefinitionLibrary.getParameter()) {
if (parameter.getName().equals("Conditions Indicating End of Life or With Limited Life Expectancy")) {
conditionsIndicatingEndOfLife = parameter;
break;
}
}
assertTrue(conditionsIndicatingEndOfLife != null);
assertTrue(moduleDefinitionLibrary.getDataRequirement().size() == 3);
DataRequirement diagnosisRequirement = null;
for (DataRequirement requirement : moduleDefinitionLibrary.getDataRequirement()) {
if (requirement.getType() == Enumerations.FHIRAllTypes.CONDITION && requirement.getCodeFilter().size() == 1) {
DataRequirement.DataRequirementCodeFilterComponent cfc = requirement.getCodeFilterFirstRep();
if (cfc.hasPath() && cfc.getPath().equals("category") && cfc.getCode().size() == 1 && cfc.getCodeFirstRep().hasCode() && cfc.getCodeFirstRep().getCode().equals("encounter-diagnosis")) {
diagnosisRequirement = requirement;
break;
}
}
}
assertTrue(diagnosisRequirement != null);
FhirContext context = getFhirContext();
IParser parser = context.newJsonParser();
String moduleDefString = parser.setPrettyPrint(true).encodeResourceToString(moduleDefinitionLibrary);
logger.debug(moduleDefString);
} catch (IOException ioException) {
ioException.printStackTrace();
}
}
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