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Example 1 with ContactDetail

use of org.hl7.fhir.r5.model.ContactDetail in project gpconnect-demonstrator by nhsconnect.

the class PatientResourceProvider method getValidContact.

private ContactDetail getValidContact() {
    HumanName ctName = new HumanName();
    ctName.setUse(NameUse.OFFICIAL);
    ctName.setFamily("FamilyName");
    List<CodeableConcept> ctRelList = new ArrayList<>();
    ctRelList.add(createCoding("family", "Family", SystemURL.VS_PATIENT_CONTACT_REL));
    ContactDetail contact = new ContactDetail();
    contact.setName(ctName.toString());
    contact.addTelecom(staticElHelper.getValidTelecom());
    return contact;
}
Also used : ContactDetail(org.hl7.fhir.dstu3.model.ContactDetail) HumanName(org.hl7.fhir.dstu3.model.HumanName) ArrayList(java.util.ArrayList) CodeableConcept(org.hl7.fhir.dstu3.model.CodeableConcept)

Example 2 with ContactDetail

use of org.hl7.fhir.r5.model.ContactDetail in project gpconnect-demonstrator by nhsconnect.

the class OrganizationResourceProvider method getValidContact.

private ContactDetail getValidContact() {
    HumanName orgCtName = new HumanName();
    orgCtName.setUse(NameUse.USUAL);
    orgCtName.setFamily("FamilyName");
    Coding coding = new Coding().setSystem(SystemURL.VS_CC_ORG_CT_ENTITYTYPE).setDisplay("ADMIN");
    CodeableConcept orgCtPurpose = new CodeableConcept().addCoding(coding);
    ContactDetail orgContact = new ContactDetail();
    orgContact.setNameElement(orgCtName.getFamilyElement());
    orgContact.addTelecom(getValidTelecom());
    return orgContact;
}
Also used : ContactDetail(org.hl7.fhir.dstu3.model.ContactDetail) HumanName(org.hl7.fhir.dstu3.model.HumanName) Coding(org.hl7.fhir.dstu3.model.Coding) CodeableConcept(org.hl7.fhir.dstu3.model.CodeableConcept)

Example 3 with ContactDetail

use of org.hl7.fhir.r5.model.ContactDetail in project kindling by HL7.

the class Publisher method generateCodeSystemRegistry.

private void generateCodeSystemRegistry() throws FileNotFoundException, IOException, Exception {
    XmlParser xml = new XmlParser();
    xml.setOutputStyle(OutputStyle.PRETTY);
    Bundle bnd = (Bundle) xml.parse(new CSFileInputStream(Utilities.path(page.getFolders().srcDir, "namingsystem", "namingsystem-terminologies.xml")));
    for (BundleEntryComponent entry : bnd.getEntry()) {
        NamingSystem ns = (NamingSystem) entry.getResource();
        entry.setFullUrl("http://hl7.org/fhir/NamingSystem/" + ns.getId());
        String url = null;
        for (NamingSystemUniqueIdComponent t : ns.getUniqueId()) {
            if (t.getType() == NamingSystemIdentifierType.URI)
                url = t.getValue();
        }
        if (url != null) {
            if (url.startsWith("http://hl7.org/fhir"))
                page.getDefinitions().addNs(url, "System " + ns.getName(), "terminologies-systems.html#" + url);
            page.getDefinitions().addNs(entry.getFullUrl(), ns.getId(), "terminologies-systems.html#" + url);
        }
    }
    List<String> names = new ArrayList<String>();
    Set<String> urls = new HashSet<>();
    names.addAll(page.getCodeSystems().keys());
    Collections.sort(names);
    for (String n : names) {
        CodeSystem cs = page.getCodeSystems().get(n);
        if (cs != null && !urls.contains(cs.getUrl()) && cs.hasUrl() && !cs.getUrl().startsWith("http://terminology.hl7.org")) {
            urls.add(cs.getUrl());
            if (cs.hasName()) {
                NamingSystem ns = new NamingSystem();
                ns.setId(cs.getId());
                ns.setName(cs.getName());
                ns.setStatus(cs.getStatus());
                if (!ns.hasStatus())
                    ns.setStatus(PublicationStatus.DRAFT);
                ns.setKind(NamingSystemType.CODESYSTEM);
                ns.setPublisher(cs.getPublisher());
                for (ContactDetail c : cs.getContact()) {
                    ContactDetail nc = ns.addContact();
                    nc.setName(c.getName());
                    for (ContactPoint cc : c.getTelecom()) {
                        nc.getTelecom().add(cc);
                    }
                }
                ns.setDate(cs.getDate());
                if (!ns.hasDate())
                    ns.setDate(page.getGenDate().getTime());
                ns.setDescription(cs.getDescription());
                ns.addUniqueId().setType(NamingSystemIdentifierType.URI).setValue(cs.getUrl()).setPreferred(true);
                String oid = CodeSystemUtilities.getOID(cs);
                if (oid != null) {
                    if (oid.startsWith("urn:oid:"))
                        oid = oid.substring(8);
                    ns.addUniqueId().setType(NamingSystemIdentifierType.OID).setValue(oid).setPreferred(false);
                }
                ns.setUserData("path", cs.getUserData("path"));
                bnd.addEntry().setResource(ns).setFullUrl("http://hl7.org/fhir/" + ns.fhirType() + "/" + ns.getId());
            }
        }
    }
    xml.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.xml")), bnd);
    cloneToXhtml("namingsystem-terminologies", "Terminology Registry", false, "resource-instance:NamingSystem", "Terminology Registry", null, wg("vocab"));
    xml.setOutputStyle(OutputStyle.CANONICAL);
    xml.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.canonical.xml")), bnd);
    JsonParser json = new JsonParser();
    json.setOutputStyle(OutputStyle.PRETTY);
    json.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.json")), bnd);
    jsonToXhtml("namingsystem-terminologies", "Terminology Registry", TextFile.fileToString(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.json")), "resource-instance:NamingSystem", "Terminology Registry", null, wg("vocab"));
    json.setOutputStyle(OutputStyle.CANONICAL);
    json.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.canonical.json")), bnd);
    RdfParser rdf = new RdfParser();
    rdf.setOutputStyle(OutputStyle.PRETTY);
    rdf.compose(new FileOutputStream(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.ttl")), bnd);
    ttlToXhtml("namingsystem-terminologies", "Terminology Registry", TextFile.fileToString(Utilities.path(page.getFolders().dstDir, "namingsystem-terminologies.ttl")), "resource-instance:NamingSystem", "Terminology Registry", null, wg("vocab"));
    StringBuilder b = new StringBuilder();
    b.append("<table class=\"grid\">\r\n");
    b.append(" <tr>");
    b.append("<td><b>Name</b></td>");
    b.append("<td><b>Uri</b></td>");
    b.append("<td><b>OID</b></td>");
    b.append("</tr>\r\n");
    for (BundleEntryComponent entry : bnd.getEntry()) {
        NamingSystem ns = (NamingSystem) entry.getResource();
        String uri = "";
        String oid = "";
        for (NamingSystemUniqueIdComponent id : ns.getUniqueId()) {
            if (id.getType() == NamingSystemIdentifierType.URI)
                uri = id.getValue();
            if (id.getType() == NamingSystemIdentifierType.OID)
                oid = id.getValue();
        }
        String link = "terminologies-systems.html#" + uri;
        if (ns.getUserData("path") != null)
            link = ns.getUserString("path");
        b.append(" <tr>");
        b.append("<td><a href=\"" + link + "\">" + Utilities.escapeXml(ns.getName()) + "</a></td>");
        b.append("<td>" + Utilities.escapeXml(uri) + "</td>");
        b.append("<td>" + Utilities.escapeXml(oid) + "</td>");
        b.append("</tr>\r\n");
    }
    b.append("</table>\r\n");
    String html = TextFile.fileToString(page.getFolders().templateDir + "template-example.html").replace("<%example%>", b.toString()).replace("<%example-usage%>", "");
    html = page.processPageIncludes("namingsystem-terminologies.html", html, "resource-instance:NamingSystem", null, bnd, null, "Example", null, null, page.getDefinitions().getWorkgroups().get("fhir"));
    TextFile.stringToFile(html, page.getFolders().dstDir + "namingsystem-terminologies.html");
    cachePage("namingsystem-terminologies.html", html, "Registered Code Systems", false);
}
Also used : XmlParser(org.hl7.fhir.r5.formats.XmlParser) NamingSystemUniqueIdComponent(org.hl7.fhir.r5.model.NamingSystem.NamingSystemUniqueIdComponent) CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder) Bundle(org.hl7.fhir.r5.model.Bundle) ArrayList(java.util.ArrayList) CodeSystem(org.hl7.fhir.r5.model.CodeSystem) ContactDetail(org.hl7.fhir.r5.model.ContactDetail) ContactPoint(org.hl7.fhir.r5.model.ContactPoint) BundleEntryComponent(org.hl7.fhir.r5.model.Bundle.BundleEntryComponent) NamingSystem(org.hl7.fhir.r5.model.NamingSystem) FileOutputStream(java.io.FileOutputStream) CSFileInputStream(org.hl7.fhir.utilities.CSFileInputStream) HashSet(java.util.HashSet) JsonParser(org.hl7.fhir.r5.formats.JsonParser) RdfParser(org.hl7.fhir.r5.formats.RdfParser)

Example 4 with ContactDetail

use of org.hl7.fhir.r5.model.ContactDetail in project kindling by HL7.

the class PageProcessor method cdHeader.

private String cdHeader(String mode) {
    StringBuilder b = new StringBuilder();
    b.append("<ul class=\"nav nav-tabs\">");
    b.append(makeHeaderTab("Contact Detail", "contactdetail.html", mode == null || "base".equals(mode)));
    b.append(makeHeaderTab("Examples", "contactdetail-examples.html", mode == null || "examples".equals(mode)));
    b.append(makeHeaderTab("Detailed Descriptions", "contactdetail-definitions.html", mode == null || "definitions".equals(mode)));
    b.append(makeHeaderTab("Mappings", "contactdetail-mappings.html", mode == null || "mappings".equals(mode)));
    b.append("</ul>\r\n");
    return b.toString();
}
Also used : CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder)

Example 5 with ContactDetail

use of org.hl7.fhir.r5.model.ContactDetail in project kindling by HL7.

the class ValueSetGenerator method loadOperationOutcomeValueSet.

public void loadOperationOutcomeValueSet(BindingSpecification cd) throws Exception {
    ValueSet vs = new ValueSet();
    cd.setValueSet(vs);
    cd.setBindingMethod(BindingMethod.ValueSet);
    vs.setId("operation-outcome");
    vs.setUrl("http://hl7.org/fhir/ValueSet/" + vs.getId());
    vs.setName("OperationOutcomeCodes");
    vs.setTitle("Operation Outcome Codes");
    vs.setPublisher("HL7 (FHIR Project)");
    vs.setVersion(version);
    vs.setUserData("filename", "valueset-" + vs.getId());
    if (!vs.hasExtension(ToolingExtensions.EXT_WORKGROUP)) {
        vs.addExtension().setUrl(ToolingExtensions.EXT_WORKGROUP).setValue(new CodeType("fhir"));
    } else {
        String ec = ToolingExtensions.readStringExtension(vs, ToolingExtensions.EXT_WORKGROUP);
        if (!ec.equals("fhir"))
            System.out.println("ValueSet " + vs.getUrl() + " WG mismatch 11: is " + ec + ", want to set to " + "fhir");
    }
    vs.setUserData("path", "valueset-" + vs.getId() + ".html");
    ContactDetail c = vs.addContact();
    c.addTelecom().setSystem(ContactPointSystem.URL).setValue("http://hl7.org/fhir");
    c.addTelecom().setSystem(ContactPointSystem.EMAIL).setValue("fhir@lists.hl7.org");
    vs.setDescription("Operation Outcome codes used by FHIR test servers (see Implementation file translations.xml)");
    vs.setStatus(PublicationStatus.DRAFT);
    if (!vs.hasCompose())
        vs.setCompose(new ValueSetComposeComponent());
    vs.getCompose().addInclude().setSystem("http://terminology.hl7.org/CodeSystem/operation-outcome");
    CodeSystem cs = new CodeSystem();
    cs.setHierarchyMeaning(CodeSystemHierarchyMeaning.ISA);
    Set<String> codes = translator.listTranslations("ecode");
    for (String s : sorted(codes)) {
        Map<String, String> langs = translator.translations(s);
        ConceptDefinitionComponent cv = cs.addConcept();
        cv.setCode(s);
        cv.setDisplay(langs.get("en"));
        for (String lang : langs.keySet()) {
            if (!lang.equals("en")) {
                String value = langs.get(lang);
                ConceptDefinitionDesignationComponent dc = cv.addDesignation();
                dc.setLanguage(lang);
                dc.setValue(value);
                dc.getUse().setSystem("http://terminology.hl7.org/CodeSystem/designation-usage").setCode("display");
            }
        }
    }
    CodeSystemConvertor.populate(cs, vs);
    cs.setUrl("http://terminology.hl7.org/CodeSystem/operation-outcome");
    cs.setVersion(version);
    cs.setCaseSensitive(true);
    cs.setContent(CodeSystemContentMode.COMPLETE);
    definitions.getCodeSystems().see(cs, packageInfo);
}
Also used : ContactDetail(org.hl7.fhir.r5.model.ContactDetail) ConceptDefinitionComponent(org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent) ConceptDefinitionDesignationComponent(org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionDesignationComponent) CodeType(org.hl7.fhir.r5.model.CodeType) ValueSet(org.hl7.fhir.r5.model.ValueSet) ValueSetComposeComponent(org.hl7.fhir.r5.model.ValueSet.ValueSetComposeComponent) CodeSystem(org.hl7.fhir.r5.model.CodeSystem)

Aggregations

ContactDetail (org.hl7.fhir.dstu3.model.ContactDetail)15 ContactDetail (org.hl7.fhir.r5.model.ContactDetail)15 ContactPoint (org.hl7.fhir.r5.model.ContactPoint)9 ContactDetail (org.hl7.fhir.r4b.model.ContactDetail)7 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)7 CodeType (org.hl7.fhir.r5.model.CodeType)6 NotImplementedException (org.apache.commons.lang3.NotImplementedException)5 CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)5 HashSet (java.util.HashSet)4 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)4 ContactPoint (org.hl7.fhir.r4b.model.ContactPoint)4 Gson (com.google.gson.Gson)3 GsonBuilder (com.google.gson.GsonBuilder)3 JsonArray (com.google.gson.JsonArray)3 JsonObject (com.google.gson.JsonObject)3 FileOutputStream (java.io.FileOutputStream)3 UnsupportedEncodingException (java.io.UnsupportedEncodingException)3 HashMap (java.util.HashMap)3 CodeableConcept (org.hl7.fhir.dstu3.model.CodeableConcept)3 ContactPoint (org.hl7.fhir.dstu3.model.ContactPoint)3