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Example 51 with ContactDetail

use of org.hl7.fhir.r5.model.ContactDetail in project org.hl7.fhir.core by hapifhir.

the class NarrativeGenerator method generate.

public boolean generate(ResourceContext rcontext, ConceptMap cm) throws FHIRFormatError, DefinitionException, IOException {
    XhtmlNode x = new XhtmlNode(NodeType.Element, "div");
    x.h2().addText(cm.getName() + " (" + cm.getUrl() + ")");
    XhtmlNode p = x.para();
    p.tx("Mapping from ");
    if (cm.hasSource())
        AddVsRef(rcontext, cm.getSource().primitiveValue(), p);
    else
        p.tx("(not specified)");
    p.tx(" to ");
    if (cm.hasTarget())
        AddVsRef(rcontext, cm.getTarget().primitiveValue(), p);
    else
        p.tx("(not specified)");
    p = x.para();
    if (cm.getExperimental())
        p.addText(Utilities.capitalize(cm.getStatus().toString()) + " (not intended for production usage). ");
    else
        p.addText(Utilities.capitalize(cm.getStatus().toString()) + ". ");
    p.tx("Published on " + (cm.hasDate() ? cm.getDateElement().toHumanDisplay() : "??") + " by " + cm.getPublisher());
    if (!cm.getContact().isEmpty()) {
        p.tx(" (");
        boolean firsti = true;
        for (ContactDetail ci : cm.getContact()) {
            if (firsti)
                firsti = false;
            else
                p.tx(", ");
            if (ci.hasName())
                p.addText(ci.getName() + ": ");
            boolean first = true;
            for (ContactPoint c : ci.getTelecom()) {
                if (first)
                    first = false;
                else
                    p.tx(", ");
                addTelecom(p, c);
            }
        }
        p.tx(")");
    }
    p.tx(". ");
    p.addText(cm.getCopyright());
    if (!Utilities.noString(cm.getDescription()))
        addMarkdown(x, cm.getDescription());
    x.br();
    CodeSystem cs = context.fetchCodeSystem("http://hl7.org/fhir/concept-map-equivalence");
    String eqpath = cs.getUserString("path");
    for (ConceptMapGroupComponent grp : cm.getGroup()) {
        String src = grp.getSource();
        boolean comment = false;
        boolean ok = true;
        Map<String, HashSet<String>> sources = new HashMap<String, HashSet<String>>();
        Map<String, HashSet<String>> targets = new HashMap<String, HashSet<String>>();
        sources.put("code", new HashSet<String>());
        targets.put("code", new HashSet<String>());
        SourceElementComponent cc = grp.getElement().get(0);
        String dst = grp.getTarget();
        sources.get("code").add(grp.getSource());
        targets.get("code").add(grp.getTarget());
        for (SourceElementComponent ccl : grp.getElement()) {
            ok = ok && ccl.getTarget().size() == 1 && ccl.getTarget().get(0).getDependsOn().isEmpty() && ccl.getTarget().get(0).getProduct().isEmpty();
            for (TargetElementComponent ccm : ccl.getTarget()) {
                comment = comment || !Utilities.noString(ccm.getComment());
                for (OtherElementComponent d : ccm.getDependsOn()) {
                    if (!sources.containsKey(d.getProperty()))
                        sources.put(d.getProperty(), new HashSet<String>());
                    sources.get(d.getProperty()).add(d.getSystem());
                }
                for (OtherElementComponent d : ccm.getProduct()) {
                    if (!targets.containsKey(d.getProperty()))
                        targets.put(d.getProperty(), new HashSet<String>());
                    targets.get(d.getProperty()).add(d.getSystem());
                }
            }
        }
        String display;
        if (ok) {
            // simple
            XhtmlNode tbl = x.table("grid");
            XhtmlNode tr = tbl.tr();
            tr.td().b().tx("Source Code");
            tr.td().b().tx("Equivalence");
            tr.td().b().tx("Destination Code");
            if (comment)
                tr.td().b().tx("Comment");
            for (SourceElementComponent ccl : grp.getElement()) {
                tr = tbl.tr();
                XhtmlNode td = tr.td();
                td.addText(ccl.getCode());
                display = getDisplayForConcept(grp.getSource(), ccl.getCode());
                if (display != null && !isSameCodeAndDisplay(ccl.getCode(), display))
                    td.tx(" (" + display + ")");
                TargetElementComponent ccm = ccl.getTarget().get(0);
                tr.td().addText(!ccm.hasEquivalence() ? "" : ccm.getEquivalence().toCode());
                td = tr.td();
                td.addText(ccm.getCode());
                display = getDisplayForConcept(grp.getTarget(), ccm.getCode());
                if (display != null && !isSameCodeAndDisplay(ccm.getCode(), display))
                    td.tx(" (" + display + ")");
                if (comment)
                    tr.td().addText(ccm.getComment());
            }
        } else {
            XhtmlNode tbl = x.table("grid");
            XhtmlNode tr = tbl.tr();
            XhtmlNode td;
            tr.td().colspan(Integer.toString(sources.size())).b().tx("Source Concept Details");
            tr.td().b().tx("Equivalence");
            tr.td().colspan(Integer.toString(targets.size())).b().tx("Destination Concept Details");
            if (comment)
                tr.td().b().tx("Comment");
            tr = tbl.tr();
            if (sources.get("code").size() == 1) {
                String url = sources.get("code").iterator().next();
                renderCSDetailsLink(tr, url);
            } else
                tr.td().b().tx("Code");
            for (String s : sources.keySet()) {
                if (!s.equals("code")) {
                    if (sources.get(s).size() == 1) {
                        String url = sources.get(s).iterator().next();
                        renderCSDetailsLink(tr, url);
                    } else
                        tr.td().b().addText(getDescForConcept(s));
                }
            }
            tr.td();
            if (targets.get("code").size() == 1) {
                String url = targets.get("code").iterator().next();
                renderCSDetailsLink(tr, url);
            } else
                tr.td().b().tx("Code");
            for (String s : targets.keySet()) {
                if (!s.equals("code")) {
                    if (targets.get(s).size() == 1) {
                        String url = targets.get(s).iterator().next();
                        renderCSDetailsLink(tr, url);
                    } else
                        tr.td().b().addText(getDescForConcept(s));
                }
            }
            if (comment)
                tr.td();
            for (int si = 0; si < grp.getElement().size(); si++) {
                SourceElementComponent ccl = grp.getElement().get(si);
                boolean slast = si == grp.getElement().size() - 1;
                boolean first = true;
                for (int ti = 0; ti < ccl.getTarget().size(); ti++) {
                    TargetElementComponent ccm = ccl.getTarget().get(ti);
                    boolean last = ti == ccl.getTarget().size() - 1;
                    tr = tbl.tr();
                    td = tr.td();
                    if (!first && !last)
                        td.setAttribute("style", "border-top-style: none; border-bottom-style: none");
                    else if (!first)
                        td.setAttribute("style", "border-top-style: none");
                    else if (!last)
                        td.setAttribute("style", "border-bottom-style: none");
                    if (first) {
                        if (sources.get("code").size() == 1)
                            td.addText(ccl.getCode());
                        else
                            td.addText(grp.getSource() + " / " + ccl.getCode());
                        display = getDisplayForConcept(grp.getSource(), ccl.getCode());
                        if (display != null)
                            td.tx(" (" + display + ")");
                    }
                    for (String s : sources.keySet()) {
                        if (!s.equals("code")) {
                            td = tr.td();
                            if (first) {
                                td.addText(getValue(ccm.getDependsOn(), s, sources.get(s).size() != 1));
                                display = getDisplay(ccm.getDependsOn(), s);
                                if (display != null)
                                    td.tx(" (" + display + ")");
                            }
                        }
                    }
                    first = false;
                    if (!ccm.hasEquivalence())
                        tr.td().tx(":" + "(" + ConceptMapEquivalence.EQUIVALENT.toCode() + ")");
                    else
                        tr.td().ah(eqpath + "#" + ccm.getEquivalence().toCode()).tx(ccm.getEquivalence().toCode());
                    td = tr.td();
                    if (targets.get("code").size() == 1)
                        td.addText(ccm.getCode());
                    else
                        td.addText(grp.getTarget() + " / " + ccm.getCode());
                    display = getDisplayForConcept(grp.getTarget(), ccm.getCode());
                    if (display != null)
                        td.tx(" (" + display + ")");
                    for (String s : targets.keySet()) {
                        if (!s.equals("code")) {
                            td = tr.td();
                            td.addText(getValue(ccm.getProduct(), s, targets.get(s).size() != 1));
                            display = getDisplay(ccm.getProduct(), s);
                            if (display != null)
                                td.tx(" (" + display + ")");
                        }
                    }
                    if (comment)
                        tr.td().addText(ccm.getComment());
                }
            }
        }
    }
    inject(cm, x, NarrativeStatus.GENERATED);
    return true;
}
Also used : CodeSystem(org.hl7.fhir.r4.model.CodeSystem) XhtmlNode(org.hl7.fhir.utilities.xhtml.XhtmlNode) OtherElementComponent(org.hl7.fhir.r4.model.ConceptMap.OtherElementComponent) TargetElementComponent(org.hl7.fhir.r4.model.ConceptMap.TargetElementComponent) ConceptMapGroupComponent(org.hl7.fhir.r4.model.ConceptMap.ConceptMapGroupComponent) SourceElementComponent(org.hl7.fhir.r4.model.ConceptMap.SourceElementComponent)

Example 52 with ContactDetail

use of org.hl7.fhir.r5.model.ContactDetail in project org.hl7.fhir.core by hapifhir.

the class StructureMapUtilities method createProfile.

private PropertyWithType createProfile(StructureMap map, List<StructureDefinition> profiles, PropertyWithType prop, String sliceName, Base ctxt) throws FHIRException {
    if (prop.getBaseProperty().getDefinition().getPath().contains("."))
        throw new DefinitionException("Unable to process entry point");
    String type = prop.getBaseProperty().getDefinition().getPath();
    String suffix = "";
    if (ids.containsKey(type)) {
        int id = ids.get(type);
        id++;
        ids.put(type, id);
        suffix = "-" + id;
    } else
        ids.put(type, 0);
    StructureDefinition profile = new StructureDefinition();
    profiles.add(profile);
    profile.setDerivation(TypeDerivationRule.CONSTRAINT);
    profile.setType(type);
    profile.setBaseDefinition(prop.getBaseProperty().getStructure().getUrl());
    profile.setName("Profile for " + profile.getType() + " for " + sliceName);
    profile.setUrl(map.getUrl().replace("StructureMap", "StructureDefinition") + "-" + profile.getType() + suffix);
    // then we can easily assign this profile url for validation later when we actually transform
    ctxt.setUserData("profile", profile.getUrl());
    profile.setId(map.getId() + "-" + profile.getType() + suffix);
    profile.setStatus(map.getStatus());
    profile.setExperimental(map.getExperimental());
    profile.setDescription("Generated automatically from the mapping by the Java Reference Implementation");
    for (ContactDetail c : map.getContact()) {
        ContactDetail p = profile.addContact();
        p.setName(c.getName());
        for (ContactPoint cc : c.getTelecom()) p.addTelecom(cc);
    }
    profile.setDate(map.getDate());
    profile.setCopyright(map.getCopyright());
    profile.setFhirVersion(FHIRVersion.fromCode(Constants.VERSION));
    profile.setKind(prop.getBaseProperty().getStructure().getKind());
    profile.setAbstract(false);
    ElementDefinition ed = profile.getDifferential().addElement();
    ed.setPath(profile.getType());
    prop.setProfileProperty(new Property(worker, ed, profile));
    return prop;
}
Also used : DefinitionException(org.hl7.fhir.exceptions.DefinitionException) Property(org.hl7.fhir.r4b.elementmodel.Property)

Example 53 with ContactDetail

use of org.hl7.fhir.r5.model.ContactDetail in project org.hl7.fhir.core by hapifhir.

the class JsonParser method composeType.

protected void composeType(String prefix, DataType type) throws IOException {
    if (type == null) {
        ;
    } else if (type instanceof Address) {
        composeAddress(prefix + "Address", (Address) type);
    } else if (type instanceof Age) {
        composeAge(prefix + "Age", (Age) type);
    } else if (type instanceof Annotation) {
        composeAnnotation(prefix + "Annotation", (Annotation) type);
    } else if (type instanceof Attachment) {
        composeAttachment(prefix + "Attachment", (Attachment) type);
    } else if (type instanceof CodeableConcept) {
        composeCodeableConcept(prefix + "CodeableConcept", (CodeableConcept) type);
    } else if (type instanceof CodeableReference) {
        composeCodeableReference(prefix + "CodeableReference", (CodeableReference) type);
    } else if (type instanceof Coding) {
        composeCoding(prefix + "Coding", (Coding) type);
    } else if (type instanceof ContactDetail) {
        composeContactDetail(prefix + "ContactDetail", (ContactDetail) type);
    } else if (type instanceof ContactPoint) {
        composeContactPoint(prefix + "ContactPoint", (ContactPoint) type);
    } else if (type instanceof Contributor) {
        composeContributor(prefix + "Contributor", (Contributor) type);
    } else if (type instanceof Count) {
        composeCount(prefix + "Count", (Count) type);
    } else if (type instanceof DataRequirement) {
        composeDataRequirement(prefix + "DataRequirement", (DataRequirement) type);
    } else if (type instanceof Distance) {
        composeDistance(prefix + "Distance", (Distance) type);
    } else if (type instanceof Dosage) {
        composeDosage(prefix + "Dosage", (Dosage) type);
    } else if (type instanceof Duration) {
        composeDuration(prefix + "Duration", (Duration) type);
    } else if (type instanceof ElementDefinition) {
        composeElementDefinition(prefix + "ElementDefinition", (ElementDefinition) type);
    } else if (type instanceof Expression) {
        composeExpression(prefix + "Expression", (Expression) type);
    } else if (type instanceof Extension) {
        composeExtension(prefix + "Extension", (Extension) type);
    } else if (type instanceof HumanName) {
        composeHumanName(prefix + "HumanName", (HumanName) type);
    } else if (type instanceof Identifier) {
        composeIdentifier(prefix + "Identifier", (Identifier) type);
    } else if (type instanceof MarketingStatus) {
        composeMarketingStatus(prefix + "MarketingStatus", (MarketingStatus) type);
    } else if (type instanceof Meta) {
        composeMeta(prefix + "Meta", (Meta) type);
    } else if (type instanceof Money) {
        composeMoney(prefix + "Money", (Money) type);
    } else if (type instanceof Narrative) {
        composeNarrative(prefix + "Narrative", (Narrative) type);
    } else if (type instanceof ParameterDefinition) {
        composeParameterDefinition(prefix + "ParameterDefinition", (ParameterDefinition) type);
    } else if (type instanceof Period) {
        composePeriod(prefix + "Period", (Period) type);
    } else if (type instanceof Population) {
        composePopulation(prefix + "Population", (Population) type);
    } else if (type instanceof ProdCharacteristic) {
        composeProdCharacteristic(prefix + "ProdCharacteristic", (ProdCharacteristic) type);
    } else if (type instanceof ProductShelfLife) {
        composeProductShelfLife(prefix + "ProductShelfLife", (ProductShelfLife) type);
    } else if (type instanceof Quantity) {
        composeQuantity(prefix + "Quantity", (Quantity) type);
    } else if (type instanceof Range) {
        composeRange(prefix + "Range", (Range) type);
    } else if (type instanceof Ratio) {
        composeRatio(prefix + "Ratio", (Ratio) type);
    } else if (type instanceof RatioRange) {
        composeRatioRange(prefix + "RatioRange", (RatioRange) type);
    } else if (type instanceof Reference) {
        composeReference(prefix + "Reference", (Reference) type);
    } else if (type instanceof RelatedArtifact) {
        composeRelatedArtifact(prefix + "RelatedArtifact", (RelatedArtifact) type);
    } else if (type instanceof SampledData) {
        composeSampledData(prefix + "SampledData", (SampledData) type);
    } else if (type instanceof Signature) {
        composeSignature(prefix + "Signature", (Signature) type);
    } else if (type instanceof Timing) {
        composeTiming(prefix + "Timing", (Timing) type);
    } else if (type instanceof TriggerDefinition) {
        composeTriggerDefinition(prefix + "TriggerDefinition", (TriggerDefinition) type);
    } else if (type instanceof UsageContext) {
        composeUsageContext(prefix + "UsageContext", (UsageContext) type);
    } else if (type instanceof CodeType) {
        composeCodeCore(prefix + "Code", (CodeType) type, false);
        composeCodeExtras(prefix + "Code", (CodeType) type, false);
    } else if (type instanceof OidType) {
        composeOidCore(prefix + "Oid", (OidType) type, false);
        composeOidExtras(prefix + "Oid", (OidType) type, false);
    } else if (type instanceof CanonicalType) {
        composeCanonicalCore(prefix + "Canonical", (CanonicalType) type, false);
        composeCanonicalExtras(prefix + "Canonical", (CanonicalType) type, false);
    } else if (type instanceof UuidType) {
        composeUuidCore(prefix + "Uuid", (UuidType) type, false);
        composeUuidExtras(prefix + "Uuid", (UuidType) type, false);
    } else if (type instanceof UrlType) {
        composeUrlCore(prefix + "Url", (UrlType) type, false);
        composeUrlExtras(prefix + "Url", (UrlType) type, false);
    } else if (type instanceof UnsignedIntType) {
        composeUnsignedIntCore(prefix + "UnsignedInt", (UnsignedIntType) type, false);
        composeUnsignedIntExtras(prefix + "UnsignedInt", (UnsignedIntType) type, false);
    } else if (type instanceof MarkdownType) {
        composeMarkdownCore(prefix + "Markdown", (MarkdownType) type, false);
        composeMarkdownExtras(prefix + "Markdown", (MarkdownType) type, false);
    } else if (type instanceof IdType) {
        composeIdCore(prefix + "Id", (IdType) type, false);
        composeIdExtras(prefix + "Id", (IdType) type, false);
    } else if (type instanceof PositiveIntType) {
        composePositiveIntCore(prefix + "PositiveInt", (PositiveIntType) type, false);
        composePositiveIntExtras(prefix + "PositiveInt", (PositiveIntType) type, false);
    } else if (type instanceof DateType) {
        composeDateCore(prefix + "Date", (DateType) type, false);
        composeDateExtras(prefix + "Date", (DateType) type, false);
    } else if (type instanceof DateTimeType) {
        composeDateTimeCore(prefix + "DateTime", (DateTimeType) type, false);
        composeDateTimeExtras(prefix + "DateTime", (DateTimeType) type, false);
    } else if (type instanceof StringType) {
        composeStringCore(prefix + "String", (StringType) type, false);
        composeStringExtras(prefix + "String", (StringType) type, false);
    } else if (type instanceof IntegerType) {
        composeIntegerCore(prefix + "Integer", (IntegerType) type, false);
        composeIntegerExtras(prefix + "Integer", (IntegerType) type, false);
    } else if (type instanceof Integer64Type) {
        composeInteger64Core(prefix + "Integer64", (Integer64Type) type, false);
        composeInteger64Extras(prefix + "Integer64", (Integer64Type) type, false);
    } else if (type instanceof UriType) {
        composeUriCore(prefix + "Uri", (UriType) type, false);
        composeUriExtras(prefix + "Uri", (UriType) type, false);
    } else if (type instanceof InstantType) {
        composeInstantCore(prefix + "Instant", (InstantType) type, false);
        composeInstantExtras(prefix + "Instant", (InstantType) type, false);
    } else if (type instanceof BooleanType) {
        composeBooleanCore(prefix + "Boolean", (BooleanType) type, false);
        composeBooleanExtras(prefix + "Boolean", (BooleanType) type, false);
    } else if (type instanceof Base64BinaryType) {
        composeBase64BinaryCore(prefix + "Base64Binary", (Base64BinaryType) type, false);
        composeBase64BinaryExtras(prefix + "Base64Binary", (Base64BinaryType) type, false);
    } else if (type instanceof TimeType) {
        composeTimeCore(prefix + "Time", (TimeType) type, false);
        composeTimeExtras(prefix + "Time", (TimeType) type, false);
    } else if (type instanceof DecimalType) {
        composeDecimalCore(prefix + "Decimal", (DecimalType) type, false);
        composeDecimalExtras(prefix + "Decimal", (DecimalType) type, false);
    } else
        throw new Error("Unhandled type");
}
Also used : FHIRFormatError(org.hl7.fhir.exceptions.FHIRFormatError)

Aggregations

ContactDetail (org.hl7.fhir.dstu3.model.ContactDetail)15 ContactDetail (org.hl7.fhir.r5.model.ContactDetail)15 ContactPoint (org.hl7.fhir.r5.model.ContactPoint)9 ContactDetail (org.hl7.fhir.r4b.model.ContactDetail)7 XhtmlNode (org.hl7.fhir.utilities.xhtml.XhtmlNode)7 CodeType (org.hl7.fhir.r5.model.CodeType)6 NotImplementedException (org.apache.commons.lang3.NotImplementedException)5 CommaSeparatedStringBuilder (org.hl7.fhir.utilities.CommaSeparatedStringBuilder)5 HashSet (java.util.HashSet)4 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)4 ContactPoint (org.hl7.fhir.r4b.model.ContactPoint)4 Gson (com.google.gson.Gson)3 GsonBuilder (com.google.gson.GsonBuilder)3 JsonArray (com.google.gson.JsonArray)3 JsonObject (com.google.gson.JsonObject)3 FileOutputStream (java.io.FileOutputStream)3 UnsupportedEncodingException (java.io.UnsupportedEncodingException)3 HashMap (java.util.HashMap)3 CodeableConcept (org.hl7.fhir.dstu3.model.CodeableConcept)3 ContactPoint (org.hl7.fhir.dstu3.model.ContactPoint)3