Examples with TTLObject org.hl7.fhir.dstu3.utils.formats.Turtle.TTLObject used on opensource projects

Example 6 with TTLObject

use of org.hl7.fhir.dstu3.utils.formats.Turtle.TTLObject in project org.hl7.fhir.core by hapifhir.

the class TurtleParser method parseChild.

private void parseChild(Turtle src, TTLComplex object, Element context, Set<String> processed, Property property, String path, String name) throws FHIRException {
    processed.add(name);
    String npath = path + "/" + property.getName();
    TTLObject e = object.getPredicates().get(FHIR_URI_BASE + name);
    if (e == null)
        return;
    if (property.isList() && (e instanceof TTLList)) {
        TTLList arr = (TTLList) e;
        for (TTLObject am : arr.getList()) {
            parseChildInstance(src, npath, object, context, property, name, am);
        }
    } else {
        parseChildInstance(src, npath, object, context, property, name, e);
    }
}

Example 7 with TTLObject

use of org.hl7.fhir.dstu3.utils.formats.Turtle.TTLObject in project org.hl7.fhir.core by hapifhir.

the class TurtleParser method parseChildren.

private void parseChildren(Turtle src, String path, TTLComplex object, Element element, boolean primitive) throws FHIRException {
    List<Property> properties = element.getProperty().getChildProperties(element.getName(), null);
    Set<String> processed = new HashSet<String>();
    if (primitive)
        processed.add(FHIR_URI_BASE + "value");
    // first pass: process the properties
    for (Property property : properties) {
        if (property.isChoice()) {
            for (TypeRefComponent type : property.getDefinition().getType()) {
                String eName = property.getName().substring(0, property.getName().length() - 3) + Utilities.capitalize(type.getCode());
                parseChild(src, object, element, processed, property, path, getFormalName(property, eName));
            }
        } else {
            parseChild(src, object, element, processed, property, path, getFormalName(property));
        }
    }
    // second pass: check for things not processed
    if (policy != ValidationPolicy.NONE) {
        for (String u : object.getPredicates().keySet()) {
            if (!processed.contains(u)) {
                TTLObject n = object.getPredicates().get(u);
                logError(n.getLine(), n.getCol(), path, IssueType.STRUCTURE, context.formatMessage(I18nConstants.UNRECOGNISED_PREDICATE_, u), IssueSeverity.ERROR);
            }
        }
    }
}

Example 8 with TTLObject

use of org.hl7.fhir.dstu3.utils.formats.Turtle.TTLObject in project org.hl7.fhir.core by hapifhir.

the class TurtleParser method parseResource.

private void parseResource(Turtle src, String npath, TTLComplex object, Element element, Property property, String name, TTLObject e) throws FHIRException {
    TTLComplex obj;
    if (e instanceof TTLComplex)
        obj = (TTLComplex) e;
    else if (e instanceof TTLURL) {
        String url = ((TTLURL) e).getUri();
        obj = src.getObject(url);
        if (obj == null) {
            logError(e.getLine(), e.getCol(), npath, IssueType.INVALID, context.formatMessage(I18nConstants.REFERENCE_TO__CANNOT_BE_RESOLVED, url), IssueSeverity.FATAL);
            return;
        }
    } else
        throw new FHIRFormatError(context.formatMessage(I18nConstants.WRONG_TYPE_FOR_RESOURCE));
    TTLObject type = obj.getPredicates().get("http://www.w3.org/2000/01/rdf-schema#type");
    if (type == null) {
        logError(object.getLine(), object.getCol(), npath, IssueType.INVALID, context.formatMessage(I18nConstants.UNKNOWN_RESOURCE_TYPE_MISSING_RDFSTYPE), IssueSeverity.FATAL);
        return;
    }
    if (type instanceof TTLList) {
        // this is actually broken - really we have to look through the structure definitions at this point
        for (TTLObject tobj : ((TTLList) type).getList()) {
            if (tobj instanceof TTLURL && ((TTLURL) tobj).getUri().startsWith(FHIR_URI_BASE)) {
                type = tobj;
                break;
            }
        }
    }
    if (!(type instanceof TTLURL)) {
        logError(object.getLine(), object.getCol(), npath, IssueType.INVALID, context.formatMessage(I18nConstants.UNEXPECTED_DATATYPE_FOR_RDFSTYPE), IssueSeverity.FATAL);
        return;
    }
    String rt = ((TTLURL) type).getUri();
    String ns = rt.substring(0, rt.lastIndexOf("/"));
    rt = rt.substring(rt.lastIndexOf("/") + 1);
    StructureDefinition sd = getDefinition(object.getLine(), object.getCol(), ns, rt);
    if (sd == null)
        return;
    Element n = new Element(tail(name), property).markLocation(object.getLine(), object.getCol());
    element.getChildren().add(n);
    n.updateProperty(new Property(this.context, sd.getSnapshot().getElement().get(0), sd), SpecialElement.fromProperty(n.getProperty()), property);
    n.setType(rt);
    parseChildren(src, npath, obj, n, false);
}

Example 9 with TTLObject

use of org.hl7.fhir.dstu3.utils.formats.Turtle.TTLObject in project org.hl7.fhir.core by hapifhir.

the class TurtleParser method parse.

private Element parse(Turtle src, TTLComplex cmp) throws FHIRException {
    TTLObject type = cmp.getPredicates().get("http://www.w3.org/2000/01/rdf-schema#type");
    if (type == null) {
        logError(cmp.getLine(), cmp.getCol(), "(document)", IssueType.INVALID, context.formatMessage(I18nConstants.UNKNOWN_RESOURCE_TYPE_MISSING_RDFSTYPE), IssueSeverity.FATAL);
        return null;
    }
    if (type instanceof TTLList) {
        // this is actually broken - really we have to look through the structure definitions at this point
        for (TTLObject obj : ((TTLList) type).getList()) {
            if (obj instanceof TTLURL && ((TTLURL) obj).getUri().startsWith(FHIR_URI_BASE)) {
                type = obj;
                break;
            }
        }
    }
    if (!(type instanceof TTLURL)) {
        logError(cmp.getLine(), cmp.getCol(), "(document)", IssueType.INVALID, context.formatMessage(I18nConstants.UNEXPECTED_DATATYPE_FOR_RDFSTYPE), IssueSeverity.FATAL);
        return null;
    }
    String name = ((TTLURL) type).getUri();
    String ns = name.substring(0, name.lastIndexOf("/"));
    name = name.substring(name.lastIndexOf("/") + 1);
    String path = "/" + name;
    StructureDefinition sd = getDefinition(cmp.getLine(), cmp.getCol(), ns, name);
    if (sd == null)
        return null;
    Element result = new Element(name, new Property(context, sd.getSnapshot().getElement().get(0), sd));
    result.markLocation(cmp.getLine(), cmp.getCol());
    result.setType(name);
    parseChildren(src, path, cmp, result, false);
    result.numberChildren();
    return result;
}

Example 10 with TTLObject

use of org.hl7.fhir.dstu3.utils.formats.Turtle.TTLObject in project org.hl7.fhir.core by hapifhir.

the class TurtleParser method parseChildren.

private void parseChildren(Turtle src, String path, TTLComplex object, Element context, boolean primitive) throws FHIRException {
    List<Property> properties = context.getProperty().getChildProperties(context.getName(), null);
    Set<String> processed = new HashSet<String>();
    if (primitive)
        processed.add(FHIR_URI_BASE + "value");
    // first pass: process the properties
    for (Property property : properties) {
        if (property.isChoice()) {
            for (TypeRefComponent type : property.getDefinition().getType()) {
                String eName = property.getName().substring(0, property.getName().length() - 3) + Utilities.capitalize(type.getCode());
                parseChild(src, object, context, processed, property, path, getFormalName(property, eName));
            }
        } else {
            parseChild(src, object, context, processed, property, path, getFormalName(property));
        }
    }
    // second pass: check for things not processed
    if (policy != ValidationPolicy.NONE) {
        for (String u : object.getPredicates().keySet()) {
            if (!processed.contains(u)) {
                TTLObject n = object.getPredicates().get(u);
                logError(n.getLine(), n.getCol(), path, IssueType.STRUCTURE, "Unrecognised predicate '" + u + "'", IssueSeverity.ERROR);
            }
        }
    }
}