use of org.hl7.fhir.r4b.elementmodel.ParserBase.NamedElement in project org.hl7.fhir.core by hapifhir.
the class JsonParser method parse.
@Override
public List<NamedElement> parse(InputStream stream) throws IOException, FHIRException {
// if we're parsing at this point, then we're going to use the custom parser
List<NamedElement> res = new ArrayList<>();
map = new IdentityHashMap<JsonElement, LocationData>();
String source = TextFile.streamToString(stream);
if (policy == ValidationPolicy.EVERYTHING) {
JsonObject obj = null;
try {
obj = JsonTrackingParser.parse(source, map, false, allowComments);
} catch (Exception e) {
logError(-1, -1, context.formatMessage(I18nConstants.DOCUMENT), IssueType.INVALID, context.formatMessage(I18nConstants.ERROR_PARSING_JSON_, e.getMessage()), IssueSeverity.FATAL);
return null;
}
assert (map.containsKey(obj));
Element e = parse(obj);
if (e != null) {
res.add(new NamedElement(null, e));
}
} else {
// (JsonObject) new com.google.gson.JsonParser().parse(source);
JsonObject obj = JsonTrackingParser.parse(source, null);
// assert (map.containsKey(obj));
Element e = parse(obj);
if (e != null) {
res.add(new NamedElement(null, e));
}
}
return res;
}
use of org.hl7.fhir.r4b.elementmodel.ParserBase.NamedElement in project org.hl7.fhir.core by hapifhir.
the class SHCParser method parse.
public List<NamedElement> parse(InputStream stream) throws IOException, FHIRFormatError, DefinitionException, FHIRException {
List<NamedElement> res = new ArrayList<>();
String src = TextFile.streamToString(stream).trim();
List<String> list = new ArrayList<>();
String pfx = null;
if (src.startsWith("{")) {
JsonObject json = JsonTrackingParser.parseJson(src);
if (checkProperty(json, "$", "verifiableCredential", true, "Array")) {
pfx = "verifiableCredential";
JsonArray arr = json.getAsJsonArray("verifiableCredential");
int i = 0;
for (JsonElement e : arr) {
if (!(e instanceof JsonPrimitive)) {
logError(line(e), col(e), "$.verifiableCredential[" + i + "]", IssueType.STRUCTURE, "Wrong Property verifiableCredential in JSON Payload. Expected : String but found " + JSONUtil.type(e), IssueSeverity.ERROR);
} else {
list.add(e.getAsString());
}
i++;
}
} else {
return res;
}
} else {
list.add(src);
}
int c = 0;
for (String ssrc : list) {
String prefix = pfx == null ? "" : pfx + "[" + Integer.toString(c) + "].";
c++;
JWT jwt = null;
try {
jwt = decodeJWT(ssrc);
} catch (Exception e) {
logError(1, 1, prefix + "JWT", IssueType.INVALID, "Unable to decode JWT token", IssueSeverity.ERROR);
return res;
}
map = jwt.map;
checkNamedProperties(jwt.getPayload(), prefix + "payload", "iss", "nbf", "vc");
checkProperty(jwt.getPayload(), prefix + "payload", "iss", true, "String");
logError(1, 1, prefix + "JWT", IssueType.INFORMATIONAL, "The FHIR Validator does not check the JWT signature " + "(see https://demo-portals.smarthealth.cards/VerifierPortal.html or https://github.com/smart-on-fhir/health-cards-dev-tools) (Issuer = '" + jwt.getPayload().get("iss").getAsString() + "')", IssueSeverity.INFORMATION);
checkProperty(jwt.getPayload(), prefix + "payload", "nbf", true, "Number");
JsonObject vc = jwt.getPayload().getAsJsonObject("vc");
if (vc == null) {
logError(1, 1, "JWT", IssueType.STRUCTURE, "Unable to find property 'vc' in the payload", IssueSeverity.ERROR);
return res;
}
String path = prefix + "payload.vc";
checkNamedProperties(vc, path, "type", "credentialSubject");
if (!checkProperty(vc, path, "type", true, "Array")) {
return res;
}
JsonArray type = vc.getAsJsonArray("type");
int i = 0;
for (JsonElement e : type) {
if (!(e instanceof JsonPrimitive)) {
logError(line(e), col(e), path + ".type[" + i + "]", IssueType.STRUCTURE, "Wrong Property Type in JSON Payload. Expected : String but found " + JSONUtil.type(e), IssueSeverity.ERROR);
} else {
types.add(e.getAsString());
}
i++;
}
if (!types.contains("https://smarthealth.cards#health-card")) {
logError(line(vc), col(vc), path, IssueType.STRUCTURE, "Card does not claim to be of type https://smarthealth.cards#health-card, cannot validate", IssueSeverity.ERROR);
return res;
}
if (!checkProperty(vc, path, "credentialSubject", true, "Object")) {
return res;
}
JsonObject cs = vc.getAsJsonObject("credentialSubject");
path = path + ".credentialSubject";
if (!checkProperty(cs, path, "fhirVersion", true, "String")) {
return res;
}
JsonElement fv = cs.get("fhirVersion");
if (!VersionUtilities.versionsCompatible(context.getVersion(), fv.getAsString())) {
logError(line(fv), col(fv), path + ".fhirVersion", IssueType.STRUCTURE, "Card claims to be of version " + fv.getAsString() + ", cannot be validated against version " + context.getVersion(), IssueSeverity.ERROR);
return res;
}
if (!checkProperty(cs, path, "fhirBundle", true, "Object")) {
return res;
}
// ok. all checks passed, we can now validate the bundle
Element e = jsonParser.parse(cs.getAsJsonObject("fhirBundle"), map);
if (e != null) {
res.add(new NamedElement(path, e));
}
}
return res;
}
use of org.hl7.fhir.r4b.elementmodel.ParserBase.NamedElement in project org.hl7.fhir.core by hapifhir.
the class TurtleParser method parse.
@Override
public List<NamedElement> parse(InputStream input) throws IOException, FHIRException {
List<NamedElement> res = new ArrayList<>();
Turtle src = new Turtle();
if (policy == ValidationPolicy.EVERYTHING) {
try {
src.parse(TextFile.streamToString(input));
} catch (Exception e) {
logError(-1, -1, "(document)", IssueType.INVALID, context.formatMessage(I18nConstants.ERROR_PARSING_TURTLE_, e.getMessage()), IssueSeverity.FATAL);
return null;
}
Element e = parse(src);
if (e != null) {
res.add(new NamedElement(null, e));
}
} else {
src.parse(TextFile.streamToString(input));
Element e = parse(src);
if (e != null) {
res.add(new NamedElement(null, e));
}
}
return res;
}
use of org.hl7.fhir.r4b.elementmodel.ParserBase.NamedElement in project org.hl7.fhir.core by hapifhir.
the class JsonParser method parse.
@Override
public List<NamedElement> parse(InputStream stream) throws IOException, FHIRException {
// if we're parsing at this point, then we're going to use the custom parser
List<NamedElement> res = new ArrayList<>();
map = new IdentityHashMap<JsonElement, LocationData>();
String source = TextFile.streamToString(stream);
if (policy == ValidationPolicy.EVERYTHING) {
JsonObject obj = null;
try {
obj = JsonTrackingParser.parse(source, map, false, allowComments);
} catch (Exception e) {
logError(-1, -1, context.formatMessage(I18nConstants.DOCUMENT), IssueType.INVALID, context.formatMessage(I18nConstants.ERROR_PARSING_JSON_, e.getMessage()), IssueSeverity.FATAL);
return null;
}
assert (map.containsKey(obj));
Element e = parse(obj);
if (e != null) {
res.add(new NamedElement(null, e));
}
} else {
// (JsonObject) new com.google.gson.JsonParser().parse(source);
JsonObject obj = JsonTrackingParser.parse(source, null);
// assert (map.containsKey(obj));
Element e = parse(obj);
if (e != null) {
res.add(new NamedElement(null, e));
}
}
return res;
}
use of org.hl7.fhir.r4b.elementmodel.ParserBase.NamedElement in project org.hl7.fhir.core by hapifhir.
the class InstanceValidator method validate.
@Override
public org.hl7.fhir.r5.elementmodel.Element validate(Object appContext, List<ValidationMessage> errors, InputStream stream, FhirFormat format, List<StructureDefinition> profiles) throws FHIRException {
ParserBase parser = Manager.makeParser(context, format);
if (parser instanceof XmlParser)
((XmlParser) parser).setAllowXsiLocation(allowXsiLocation);
parser.setupValidation(ValidationPolicy.EVERYTHING, errors);
long t = System.nanoTime();
List<NamedElement> list = null;
try {
list = parser.parse(stream);
} catch (IOException e1) {
throw new FHIRException(e1);
}
timeTracker.load(t);
if (list != null && !list.isEmpty()) {
String url = parser.getImpliedProfile();
if (url != null) {
StructureDefinition sd = context.fetchResource(StructureDefinition.class, url);
if (sd == null) {
rule(errors, IssueType.NOTFOUND, "Payload", false, "Implied profile " + url + " not known to validator");
} else {
profiles.add(sd);
}
}
for (NamedElement ne : list) {
validate(appContext, errors, ne.getName(), ne.getElement(), profiles);
}
}
// todo: this is broken, but fixing it really complicates things elsewhere, so we do this for now
return (list == null || list.isEmpty()) ? null : list.get(0).getElement();
}
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