Examples with StructureDefinition org.hl7.fhir.r5.model.StructureDefinition used on opensource projects

Example 1 with StructureDefinition

use of org.hl7.fhir.r5.model.StructureDefinition in project kindling by HL7.

the class Publisher method produceProfiledTypeProfile.

private void produceProfiledTypeProfile(ProfiledType pt) throws Exception {
    String fn = pt.getName().toLowerCase() + ".profile.xml";
    StructureDefinition rp = pt.getProfile();
    FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + fn);
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(fn, ".canonical.xml"));
    new XmlParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(fn, ".json"));
    new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(fn, ".canonical.json"));
    new JsonParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, rp);
    s.close();
    Utilities.copyFile(new CSFile(page.getFolders().dstDir + fn), new CSFile(Utilities.path(page.getFolders().dstDir, "examples", fn)));
    addToResourceFeed(rp, page.getTypeBundle(), (fn));
    cloneToXhtml(pt.getName().toLowerCase() + ".profile", "StructureDefinition for " + pt.getName(), false, "profile-instance:type:" + pt.getName(), "Type", null, wg("mnm"));
    jsonToXhtml(pt.getName().toLowerCase() + ".profile", "StructureDefinition for " + pt.getName(), resource2Json(rp), "profile-instance:type:" + pt.getName(), "Type", null, wg("mnm"));
    ttlToXhtml(pt.getName().toLowerCase() + ".profile", "StructureDefinition for " + pt.getName(), resource2Ttl(rp), "profile-instance:type:" + pt.getName(), "Type", null, wg("mnm"));
    String shex = new ShExGenerator(page.getWorkerContext()).generate(HTMLLinkPolicy.NONE, rp);
    TextFile.stringToFile(shex, Utilities.changeFileExt(page.getFolders().dstDir + fn, ".shex"));
    shexToXhtml(pt.getName().toLowerCase(), "ShEx statement for " + pt.getName(), shex, "profile-instance:type:" + pt.getName(), "Type", null, wg("mnm"));
}

Example 2 with StructureDefinition

use of org.hl7.fhir.r5.model.StructureDefinition in project kindling by HL7.

the class Publisher method genXhtmlProfile.

private void genXhtmlProfile() throws Exception {
    StructureDefinition profile = new ProfileGenerator(page.getDefinitions(), page.getWorkerContext(), page, page.getGenDate(), page.getVersion(), dataElements, fpUsages, page.getFolders().rootDir, page.getUml(), page.getRc()).generateXhtml();
    if (page.getProfiles().has(profile.getUrl()))
        throw new Exception("Duplicate Profile URL " + profile.getUrl());
    page.getProfiles().see(profile, page.packageInfo());
// DataTypeTableGenerator dtg = new DataTypeTableGenerator(page.getFolders().dstDir, page, t.getCode(), true);
// t.setProfile(profile);
// t.getProfile().getText().setDiv(new XhtmlNode(NodeType.Element, "div"));
// t.getProfile().getText().getDiv().getChildNodes().add(dtg.generate(t));
}

Example 3 with StructureDefinition

use of org.hl7.fhir.r5.model.StructureDefinition in project kindling by HL7.

the class Publisher method produceSpecMap.

private void produceSpecMap() throws IOException {
    SpecMapManager spm = new SpecMapManager("hl7.fhir.core", page.getVersion().toCode(), page.getVersion().toCode(), page.getBuildId(), page.getGenDate(), CANONICAL_BASE);
    for (StructureDefinition sd : page.getWorkerContext().allStructures()) {
        if (sd.hasUserData("path")) {
            spm.path(sd.getUrl(), sd.getUserString("path").replace("\\", "/"));
            spm.target(sd.getUserString("path").replace("\\", "/"));
        }
    }
    for (StructureDefinition sd : page.getWorkerContext().getExtensionDefinitions()) {
        if (sd.hasUserData("path")) {
            spm.path(sd.getUrl(), sd.getUserString("path").replace("\\", "/"));
            spm.target(sd.getUserString("path").replace("\\", "/"));
        }
    }
    for (String s : page.getCodeSystems().keys()) {
        CodeSystem cs = page.getCodeSystems().get(s);
        if (cs == null && !Utilities.existsInList(s, "http://unitsofmeasure.org", "http://loinc.org", "http://fdasis.nlm.nih.gov", "http://www.nlm.nih.gov/research/umls/rxnorm", "urn:oid:1.2.36.1.2001.1005.17") && !SIDUtilities.isknownCodeSystem(s))
            System.out.println("No code system resource found for " + s);
    }
    for (CodeSystem cs : page.getCodeSystems().getList()) {
        if (cs != null && cs.hasUserData("path")) {
            spm.path(cs.getUrl(), cs.getUserString("path").replace("\\", "/"));
            spm.target(cs.getUserString("path").replace("\\", "/"));
        }
    }
    for (ValueSet vs : page.getValueSets().getList()) {
        if (vs.hasUserData("path")) {
            spm.path(vs.getUrl(), vs.getUserString("path").replace("\\", "/"));
            spm.target(vs.getUserString("path").replace("\\", "/"));
        }
    }
    for (ConceptMap cm : page.getConceptMaps().getList()) {
        if (cm.hasUserData("path")) {
            spm.path(cm.getUrl(), cm.getUserString("path").replace("\\", "/"));
            spm.target(cm.getUserString("path").replace("\\", "/"));
        }
    }
    for (String s : page.getDefinitions().getPageTitles().keySet()) {
        spm.page(s, page.getDefinitions().getPageTitles().get(s));
    }
    for (String n : page.getIni().getPropertyNames("pages")) {
        spm.target(n);
    }
    for (ResourceDefn rd : page.getDefinitions().getResources().values()) {
        spm.target(rd.getName().toLowerCase() + ".html");
        spm.target(rd.getName().toLowerCase() + "-definitions.html");
        spm.target(rd.getName().toLowerCase() + "-mappings.html");
        spm.target(rd.getName().toLowerCase() + "-examples.html");
        spm.target(rd.getName().toLowerCase() + "-profiles.html");
        if (!rd.getOperations().isEmpty())
            spm.target(rd.getName().toLowerCase() + "-operations.html");
        for (Example ex : rd.getExamples()) {
            ImplementationGuideDefn ig = ex.getIg() == null ? null : page.getDefinitions().getIgs().get(ex.getIg());
            String prefix = (ig == null || ig.isCore()) ? "" : ig.getCode() + "/";
            spm.target(prefix + ex.getTitle() + ".html");
        }
    }
    for (Profile p : page.getDefinitions().getPackList()) {
        spm.target(p.getId() + ".html");
    }
    // for (String url : page.getDefinitions().getMapTypes().keySet()) {
    // spm.map(url, page.getDefinitions().getMapTypes().get(url).getPreamble());
    // }
    scanForImages(spm, page.getFolders().dstDir, page.getFolders().dstDir);
    scanForPages(spm, page.getFolders().dstDir, page.getFolders().dstDir);
    for (String url : page.getDefinitions().getRedirectList().keySet()) {
        // http://hl7.org/fhir/ = 20 chars
        spm.target(url.substring(20));
    }
    spm.save(page.getFolders().dstDir + "spec.internals");
}

Example 4 with StructureDefinition

use of org.hl7.fhir.r5.model.StructureDefinition in project kindling by HL7.

the class Publisher method generateProfile.

private StructureDefinition generateProfile(ResourceDefn root, String n, String xmlSpec, String jsonSpec, String ttlSpec, boolean gen) throws Exception, FileNotFoundException {
    StructureDefinition rp = root.getProfile();
    page.getProfiles().see(rp, page.packageInfo());
    FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + n + ".profile.xml");
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + n + ".profile.canonical.xml");
    new XmlParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + n + ".profile.json");
    new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + n + ".profile.canonical.json");
    new JsonParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, rp);
    s.close();
    Utilities.copyFile(new CSFile(page.getFolders().dstDir + n + ".profile.xml"), new CSFile(page.getFolders().dstDir + "examples" + File.separator + n + ".profile.xml"));
    if (buildFlags.get("all")) {
        addToResourceFeed(rp, page.getResourceBundle(), null);
    }
    if (gen) {
        saveAsPureHtml(rp, new FileOutputStream(page.getFolders().dstDir + "html" + File.separator + n + ".html"));
        cloneToXhtml(n + ".profile", "StructureDefinition for " + n, true, "profile-instance:resource:" + root.getName(), "Profile", root, root.getWg());
        jsonToXhtml(n + ".profile", "StructureDefinition for " + n, resource2Json(rp), "profile-instance:resource:" + root.getName(), "Profile", root, root.getWg());
        ttlToXhtml(n + ".profile", "StructureDefinition for " + n, resource2Ttl(rp), "profile-instance:resource:" + root.getName(), "Profile", root, root.getWg());
        String shex = new ShExGenerator(page.getWorkerContext()).generate(HTMLLinkPolicy.NONE, rp);
        TextFile.stringToFile(shex, page.getFolders().dstDir + n + ".shex");
        shexToXhtml(n, "ShEx statement for " + n, shex, "profile-instance:type:" + root.getName(), "Type", root, root.getWg());
    }
    return rp;
}

Example 5 with StructureDefinition

use of org.hl7.fhir.r5.model.StructureDefinition in project kindling by HL7.

the class Publisher method producePrimitiveTypeProfile.

private void producePrimitiveTypeProfile(DefinedCode type) throws Exception {
    String fn = type.getCode().toLowerCase() + ".profile.xml";
    StructureDefinition rp = type.getProfile();
    FileOutputStream s = new FileOutputStream(page.getFolders().dstDir + fn);
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(fn, ".canonical.xml"));
    new XmlParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(fn, ".json"));
    new JsonParser().setOutputStyle(OutputStyle.PRETTY).compose(s, rp);
    s.close();
    s = new FileOutputStream(page.getFolders().dstDir + Utilities.changeFileExt(fn, ".canonical.json"));
    new JsonParser().setOutputStyle(OutputStyle.CANONICAL).compose(s, rp);
    s.close();
    String shex = new ShExGenerator(page.getWorkerContext()).generate(HTMLLinkPolicy.NONE, rp);
    TextFile.stringToFile(shex, Utilities.changeFileExt(page.getFolders().dstDir + fn, ".shex"));
    Utilities.copyFile(new CSFile(page.getFolders().dstDir + fn), new CSFile(Utilities.path(page.getFolders().dstDir, "examples", fn)));
    addToResourceFeed(rp, page.getTypeBundle(), (fn));
    // saveAsPureHtml(rp, new FileOutputStream(page.getFolders().dstDir+ "html"
    // + File.separator + "datatypes.html"));
    cloneToXhtml(type.getCode().toLowerCase() + ".profile", "StructureDefinition for " + type.getCode(), false, "profile-instance:type:" + type.getCode(), "Type", null, wg("mnm"));
    jsonToXhtml(type.getCode().toLowerCase() + ".profile", "StructureDefinition for " + type.getCode(), resource2Json(rp), "profile-instance:type:" + type.getCode(), "Type", null, wg("mnm"));
    ttlToXhtml(type.getCode().toLowerCase() + ".profile", "StructureDefinition for " + type.getCode(), resource2Ttl(rp), "profile-instance:type:" + type.getCode(), "Type", null, wg("mnm"));
    shexToXhtml(type.getCode().toLowerCase(), "ShEx statement for " + type.getCode(), shex, "profile-instance:type:" + type.getCode(), "Type", null, wg("mnm"));
}