Examples with ActivityDefinition org.hl7.fhir.r4.model.ActivityDefinition used on opensource projects

Example 11 with ActivityDefinition

use of org.hl7.fhir.r4.model.ActivityDefinition in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveServiceRequest.

private ServiceRequest resolveServiceRequest(ActivityDefinition activityDefinition, String patientId, String practitionerId, String organizationId) throws ActivityDefinitionApplyException {
    // status, intent, code, and subject are required
    ServiceRequest serviceRequest = new ServiceRequest();
    serviceRequest.setStatus(ServiceRequest.ServiceRequestStatus.DRAFT);
    serviceRequest.setIntent(ServiceRequest.ServiceRequestIntent.PROPOSAL);
    String patientReferenceString = patientId;
    URI patientIdAsUri = URI.create(patientReferenceString);
    if (!patientIdAsUri.isAbsolute() && patientIdAsUri.getFragment() == null && !patientReferenceString.startsWith("Patient/")) {
        patientReferenceString = "Patient/" + patientId;
    }
    serviceRequest.setSubject(new Reference(patientReferenceString));
    if (practitionerId != null) {
        serviceRequest.setRequester(new Reference(practitionerId));
    } else if (organizationId != null) {
        serviceRequest.setRequester(new Reference(organizationId));
    }
    if (activityDefinition.hasExtension()) {
        serviceRequest.setExtension(activityDefinition.getExtension());
    }
    if (activityDefinition.hasCode()) {
        serviceRequest.setCode(activityDefinition.getCode());
    } else // code can be set as a dynamicValue
    if (!activityDefinition.hasCode() && !activityDefinition.hasDynamicValue()) {
        throw new ActivityDefinitionApplyException("Missing required code property");
    }
    if (activityDefinition.hasBodySite()) {
        serviceRequest.setBodySite(activityDefinition.getBodySite());
    }
    if (activityDefinition.hasProduct()) {
        throw new ActivityDefinitionApplyException("Product does not map to " + activityDefinition.getKind());
    }
    if (activityDefinition.hasDosage()) {
        throw new ActivityDefinitionApplyException("Dosage does not map to " + activityDefinition.getKind());
    }
    return serviceRequest;
}

Example 12 with ActivityDefinition

use of org.hl7.fhir.r4.model.ActivityDefinition in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveActivityDefinition.

// For library use
public Resource resolveActivityDefinition(ActivityDefinition activityDefinition, String patientId, String practitionerId, String organizationId, RequestDetails theRequest) throws FHIRException {
    Resource result = newResource(activityDefinition.getKind().toCode());
    switch(result.fhirType()) {
        case "ServiceRequest":
            result = resolveServiceRequest(activityDefinition, patientId, practitionerId, organizationId);
            break;
        case "MedicationRequest":
            result = resolveMedicationRequest(activityDefinition, patientId);
            break;
        case "SupplyRequest":
            result = resolveSupplyRequest(activityDefinition, practitionerId, organizationId);
            break;
        case "Procedure":
            result = resolveProcedure(activityDefinition, patientId);
            break;
        case "DiagnosticReport":
            result = resolveDiagnosticReport(activityDefinition, patientId);
            break;
        case "Communication":
            result = resolveCommunication(activityDefinition, patientId);
            break;
        case "CommunicationRequest":
            result = resolveCommunicationRequest(activityDefinition, patientId);
            break;
        case "Task":
            result = resolveTask(activityDefinition, patientId);
            break;
    }
    for (ActivityDefinition.ActivityDefinitionDynamicValueComponent dynamicValue : activityDefinition.getDynamicValue()) {
        // ActivityDefinition apply operation does not fail.
        try {
            if (dynamicValue.getExpression() != null) {
                // Special case for setting a Patient reference
                if ("Patient".equals(dynamicValue.getExpression().getExpression())) {
                    this.modelResolver.setValue(result, dynamicValue.getPath(), new Reference(patientId));
                } else {
                    /*
						 * TODO: Passing the activityDefinition as context here because that's what will
						 * have the libraries, but perhaps the "context" here should be the result
						 * resource?
						 */
                    Object value = expressionEvaluation.evaluateInContext(activityDefinition, dynamicValue.getExpression().getExpression(), patientId, theRequest);
                    if (value != null) {
                        logger.debug("dynamicValue value: {}", value);
                        if (value instanceof Boolean) {
                            value = new BooleanType((Boolean) value);
                        } else if (value instanceof DateTime) {
                            value = Date.from(((DateTime) value).getDateTime().toInstant());
                        } else if (value instanceof String) {
                            value = new StringType((String) value);
                        }
                        this.modelResolver.setValue(result, dynamicValue.getPath(), value);
                    } else {
                        logger.warn("WARNING: ActivityDefinition has null value for path: {}", dynamicValue.getPath());
                    }
                }
            }
        } catch (Exception e) {
            logger.error("ERROR: ActivityDefinition dynamicValue {} could not be applied and threw exception {}", dynamicValue.getPath(), e.toString());
            logger.error(e.toString());
        }
    }
    return result;
}

Example 13 with ActivityDefinition

use of org.hl7.fhir.r4.model.ActivityDefinition in project cqf-ruler by DBCG.

the class ActivityDefinitionApplyProvider method resolveCommunication.

private Communication resolveCommunication(ActivityDefinition activityDefinition, String patientId) {
    Communication communication = new Communication();
    communication.setStatus(Communication.CommunicationStatus.UNKNOWN);
    communication.setSubject(new Reference(patientId));
    if (activityDefinition.hasCode()) {
        communication.setReasonCode(Collections.singletonList(activityDefinition.getCode()));
    }
    if (activityDefinition.hasRelatedArtifact()) {
        for (RelatedArtifact artifact : activityDefinition.getRelatedArtifact()) {
            if (artifact.hasUrl()) {
                Attachment attachment = new Attachment().setUrl(artifact.getUrl());
                if (artifact.hasDisplay()) {
                    attachment.setTitle(artifact.getDisplay());
                }
                Communication.CommunicationPayloadComponent payload = new Communication.CommunicationPayloadComponent();
                payload.setContent(artifact.hasDisplay() ? attachment.setTitle(artifact.getDisplay()) : attachment);
                communication.setPayload(Collections.singletonList(payload));
            }
        // TODO - other relatedArtifact types
        }
    }
    return communication;
}

Example 14 with ActivityDefinition

use of org.hl7.fhir.r4.model.ActivityDefinition in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeActivityDefinition.

protected void composeActivityDefinition(Complex parent, String parentType, String name, ActivityDefinition element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "ActivityDefinition", name, element, index);
    if (element.hasUrlElement())
        composeUri(t, "ActivityDefinition", "url", element.getUrlElement(), -1);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "ActivityDefinition", "identifier", element.getIdentifier().get(i), i);
    if (element.hasVersionElement())
        composeString(t, "ActivityDefinition", "version", element.getVersionElement(), -1);
    if (element.hasNameElement())
        composeString(t, "ActivityDefinition", "name", element.getNameElement(), -1);
    if (element.hasTitleElement())
        composeString(t, "ActivityDefinition", "title", element.getTitleElement(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "ActivityDefinition", "status", element.getStatusElement(), -1);
    if (element.hasExperimentalElement())
        composeBoolean(t, "ActivityDefinition", "experimental", element.getExperimentalElement(), -1);
    if (element.hasDateElement())
        composeDateTime(t, "ActivityDefinition", "date", element.getDateElement(), -1);
    if (element.hasPublisherElement())
        composeString(t, "ActivityDefinition", "publisher", element.getPublisherElement(), -1);
    if (element.hasDescriptionElement())
        composeMarkdown(t, "ActivityDefinition", "description", element.getDescriptionElement(), -1);
    if (element.hasPurposeElement())
        composeMarkdown(t, "ActivityDefinition", "purpose", element.getPurposeElement(), -1);
    if (element.hasUsageElement())
        composeString(t, "ActivityDefinition", "usage", element.getUsageElement(), -1);
    if (element.hasApprovalDateElement())
        composeDate(t, "ActivityDefinition", "approvalDate", element.getApprovalDateElement(), -1);
    if (element.hasLastReviewDateElement())
        composeDate(t, "ActivityDefinition", "lastReviewDate", element.getLastReviewDateElement(), -1);
    if (element.hasEffectivePeriod())
        composePeriod(t, "ActivityDefinition", "effectivePeriod", element.getEffectivePeriod(), -1);
    for (int i = 0; i < element.getUseContext().size(); i++) composeUsageContext(t, "ActivityDefinition", "useContext", element.getUseContext().get(i), i);
    for (int i = 0; i < element.getJurisdiction().size(); i++) composeCodeableConcept(t, "ActivityDefinition", "jurisdiction", element.getJurisdiction().get(i), i);
    for (int i = 0; i < element.getTopic().size(); i++) composeCodeableConcept(t, "ActivityDefinition", "topic", element.getTopic().get(i), i);
    for (int i = 0; i < element.getContributor().size(); i++) composeContributor(t, "ActivityDefinition", "contributor", element.getContributor().get(i), i);
    for (int i = 0; i < element.getContact().size(); i++) composeContactDetail(t, "ActivityDefinition", "contact", element.getContact().get(i), i);
    if (element.hasCopyrightElement())
        composeMarkdown(t, "ActivityDefinition", "copyright", element.getCopyrightElement(), -1);
    for (int i = 0; i < element.getRelatedArtifact().size(); i++) composeRelatedArtifact(t, "ActivityDefinition", "relatedArtifact", element.getRelatedArtifact().get(i), i);
    for (int i = 0; i < element.getLibrary().size(); i++) composeReference(t, "ActivityDefinition", "library", element.getLibrary().get(i), i);
    if (element.hasKindElement())
        composeEnum(t, "ActivityDefinition", "kind", element.getKindElement(), -1);
    if (element.hasCode())
        composeCodeableConcept(t, "ActivityDefinition", "code", element.getCode(), -1);
    if (element.hasTiming())
        composeType(t, "ActivityDefinition", "timing", element.getTiming(), -1);
    if (element.hasLocation())
        composeReference(t, "ActivityDefinition", "location", element.getLocation(), -1);
    for (int i = 0; i < element.getParticipant().size(); i++) composeActivityDefinitionActivityDefinitionParticipantComponent(t, "ActivityDefinition", "participant", element.getParticipant().get(i), i);
    if (element.hasProduct())
        composeType(t, "ActivityDefinition", "product", element.getProduct(), -1);
    if (element.hasQuantity())
        composeQuantity(t, "ActivityDefinition", "quantity", element.getQuantity(), -1);
    for (int i = 0; i < element.getDosage().size(); i++) composeDosage(t, "ActivityDefinition", "dosage", element.getDosage().get(i), i);
    for (int i = 0; i < element.getBodySite().size(); i++) composeCodeableConcept(t, "ActivityDefinition", "bodySite", element.getBodySite().get(i), i);
    if (element.hasTransform())
        composeReference(t, "ActivityDefinition", "transform", element.getTransform(), -1);
    for (int i = 0; i < element.getDynamicValue().size(); i++) composeActivityDefinitionActivityDefinitionDynamicValueComponent(t, "ActivityDefinition", "dynamicValue", element.getDynamicValue().get(i), i);
}

Example 15 with ActivityDefinition

use of org.hl7.fhir.r4.model.ActivityDefinition in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeActivityDefinitionActivityDefinitionDynamicValueComponent.

protected void composeActivityDefinitionActivityDefinitionDynamicValueComponent(Complex parent, String parentType, String name, ActivityDefinition.ActivityDefinitionDynamicValueComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "dynamicValue", name, element, index);
    if (element.hasDescriptionElement())
        composeString(t, "ActivityDefinition", "description", element.getDescriptionElement(), -1);
    if (element.hasPathElement())
        composeString(t, "ActivityDefinition", "path", element.getPathElement(), -1);
    if (element.hasLanguageElement())
        composeString(t, "ActivityDefinition", "language", element.getLanguageElement(), -1);
    if (element.hasExpressionElement())
        composeString(t, "ActivityDefinition", "expression", element.getExpressionElement(), -1);
}