Examples with AllergyIntolerance org.hl7.fhir.r4.model.AllergyIntolerance used on opensource projects

Example 86 with AllergyIntolerance

use of org.hl7.fhir.r4.model.AllergyIntolerance in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeAllergyIntolerance.

protected void composeAllergyIntolerance(Complex parent, String parentType, String name, AllergyIntolerance element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "AllergyIntolerance", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "AllergyIntolerance", "identifier", element.getIdentifier().get(i), i);
    if (element.hasClinicalStatusElement())
        composeEnum(t, "AllergyIntolerance", "clinicalStatus", element.getClinicalStatusElement(), -1);
    if (element.hasVerificationStatusElement())
        composeEnum(t, "AllergyIntolerance", "verificationStatus", element.getVerificationStatusElement(), -1);
    if (element.hasTypeElement())
        composeEnum(t, "AllergyIntolerance", "type", element.getTypeElement(), -1);
    for (int i = 0; i < element.getCategory().size(); i++) composeEnum(t, "AllergyIntolerance", "category", element.getCategory().get(i), i);
    if (element.hasCriticalityElement())
        composeEnum(t, "AllergyIntolerance", "criticality", element.getCriticalityElement(), -1);
    if (element.hasCode())
        composeCodeableConcept(t, "AllergyIntolerance", "code", element.getCode(), -1);
    if (element.hasPatient())
        composeReference(t, "AllergyIntolerance", "patient", element.getPatient(), -1);
    if (element.hasOnset())
        composeType(t, "AllergyIntolerance", "onset", element.getOnset(), -1);
    if (element.hasAssertedDateElement())
        composeDateTime(t, "AllergyIntolerance", "assertedDate", element.getAssertedDateElement(), -1);
    if (element.hasRecorder())
        composeReference(t, "AllergyIntolerance", "recorder", element.getRecorder(), -1);
    if (element.hasAsserter())
        composeReference(t, "AllergyIntolerance", "asserter", element.getAsserter(), -1);
    if (element.hasLastOccurrenceElement())
        composeDateTime(t, "AllergyIntolerance", "lastOccurrence", element.getLastOccurrenceElement(), -1);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "AllergyIntolerance", "note", element.getNote().get(i), i);
    for (int i = 0; i < element.getReaction().size(); i++) composeAllergyIntoleranceAllergyIntoleranceReactionComponent(t, "AllergyIntolerance", "reaction", element.getReaction().get(i), i);
}

Example 87 with AllergyIntolerance

use of org.hl7.fhir.r4.model.AllergyIntolerance in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeAllergyIntoleranceAllergyIntoleranceReactionComponent.

protected void composeAllergyIntoleranceAllergyIntoleranceReactionComponent(Complex parent, String parentType, String name, AllergyIntolerance.AllergyIntoleranceReactionComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "reaction", name, element, index);
    if (element.hasSubstance())
        composeCodeableConcept(t, "AllergyIntolerance", "substance", element.getSubstance(), -1);
    if (element.hasCertaintyElement())
        composeEnum(t, "AllergyIntolerance", "certainty", element.getCertaintyElement(), -1);
    for (int i = 0; i < element.getManifestation().size(); i++) composeCodeableConcept(t, "AllergyIntolerance", "manifestation", element.getManifestation().get(i), i);
    if (element.hasDescriptionElement())
        composeString(t, "AllergyIntolerance", "description", element.getDescriptionElement(), -1);
    if (element.hasOnsetElement())
        composeDateTime(t, "AllergyIntolerance", "onset", element.getOnsetElement(), -1);
    if (element.hasSeverityElement())
        composeEnum(t, "AllergyIntolerance", "severity", element.getSeverityElement(), -1);
    if (element.hasExposureRoute())
        composeCodeableConcept(t, "AllergyIntolerance", "exposureRoute", element.getExposureRoute(), -1);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "AllergyIntolerance", "note", element.getNote().get(i), i);
}

Example 88 with AllergyIntolerance

use of org.hl7.fhir.r4.model.AllergyIntolerance in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeNutritionOrder.

protected void composeNutritionOrder(Complex parent, String parentType, String name, NutritionOrder element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "NutritionOrder", name, element, index);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "NutritionOrder", "identifier", element.getIdentifier().get(i), i);
    if (element.hasStatusElement())
        composeEnum(t, "NutritionOrder", "status", element.getStatusElement(), -1);
    if (element.hasPatient())
        composeReference(t, "NutritionOrder", "patient", element.getPatient(), -1);
    if (element.hasEncounter())
        composeReference(t, "NutritionOrder", "encounter", element.getEncounter(), -1);
    if (element.hasDateTimeElement())
        composeDateTime(t, "NutritionOrder", "dateTime", element.getDateTimeElement(), -1);
    if (element.hasOrderer())
        composeReference(t, "NutritionOrder", "orderer", element.getOrderer(), -1);
    for (int i = 0; i < element.getAllergyIntolerance().size(); i++) composeReference(t, "NutritionOrder", "allergyIntolerance", element.getAllergyIntolerance().get(i), i);
    for (int i = 0; i < element.getFoodPreferenceModifier().size(); i++) composeCodeableConcept(t, "NutritionOrder", "foodPreferenceModifier", element.getFoodPreferenceModifier().get(i), i);
    for (int i = 0; i < element.getExcludeFoodModifier().size(); i++) composeCodeableConcept(t, "NutritionOrder", "excludeFoodModifier", element.getExcludeFoodModifier().get(i), i);
    if (element.hasOralDiet())
        composeNutritionOrderNutritionOrderOralDietComponent(t, "NutritionOrder", "oralDiet", element.getOralDiet(), -1);
    for (int i = 0; i < element.getSupplement().size(); i++) composeNutritionOrderNutritionOrderSupplementComponent(t, "NutritionOrder", "supplement", element.getSupplement().get(i), i);
    if (element.hasEnteralFormula())
        composeNutritionOrderNutritionOrderEnteralFormulaComponent(t, "NutritionOrder", "enteralFormula", element.getEnteralFormula(), -1);
}

Example 89 with AllergyIntolerance

use of org.hl7.fhir.r4.model.AllergyIntolerance in project org.hl7.fhir.core by hapifhir.

the class ProfileUtilitiesTests method execute.

public void execute(String[] args) throws FileNotFoundException, IOException, FHIRException {
    System.out.println("loading context");
    context = SimpleWorkerContext.fromPack(Utilities.path(root, "validation.zip"));
    comp = new ProfileComparer(context);
    compare("patient-daf-dafpatient.profile.xml", "patient-qicore-qicore-patient.profile.xml");
    compare("encounter-daf-dafencounter.profile.xml", "encounter-qicore-qicore-encounter.profile.xml");
    compare("substance-daf-dafsubstance.profile.xml", "substance-qicore-qicore-substance.profile.xml");
    compare("medication-daf-dafmedication.profile.xml", "medication-qicore-qicore-medication.profile.xml");
    compare("procedure-daf-dafprocedure.profile.xml", "procedure-qicore-qicore-procedure.profile.xml");
    compare("familymemberhistory-daf-daffamilymemberhistory.profile.xml", "familymemberhistory-qicore-qicore-familymemberhistory.profile.xml");
    compare("immunization-daf-dafimmunization.profile.xml", "immunization-qicore-qicore-immunization.profile.xml");
    compare("condition-daf-dafcondition.profile.xml", "condition-qicore-qicore-condition.profile.xml");
    compare("allergyintolerance-daf-dafallergyintolerance.profile.xml", "allergyintolerance-qicore-qicore-allergyintolerance.profile.xml");
    compare("medicationadministration-daf-dafmedicationadministration.profile.xml", "medicationadministration-qicore-qicore-medicationadministration.profile.xml");
    compare("medicationdispense-daf-dafmedicationdispense.profile.xml", "medicationdispense-qicore-qicore-medicationdispense.profile.xml");
    compare("medicationprescription-daf-dafmedicationprescription.profile.xml", "medicationprescription-qicore-qicore-medicationprescription.profile.xml");
    compare("medicationstatement-daf-dafmedicationstatement.profile.xml", "medicationstatement-qicore-qicore-medicationstatement.profile.xml");
    compare("observation-daf-smokingstatus-dafsmokingstatus.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    compare("observation-daf-vitalsigns-dafvitalsigns.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    // compare("observation-daf-results-dafresultobs.profile.xml", "observation-qicore-qicore-observation.profile.xml");
    // compare("diagnosticorder-daf-dafdiagnosticorder.profile.xml", "diagnosticorder-qicore-qicore-diagnosticorder.profile.xml");
    // compare("diagnosticreport-daf-dafdiagnosticreport.profile.xml", "diagnosticreport-qicore-qicore-diagnosticreport.profile.xml");
    System.out.println("processing output");
    for (ProfileComparison outcome : comp.getComparisons()) {
        if (outcome.getSubset() != null)
            new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "intersection-" + outcome.getId() + ".xml")), outcome.getSubset());
        if (outcome.getSuperset() != null)
            new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "union-" + outcome.getId() + ".xml")), outcome.getSuperset());
        System.out.println("\r\n" + outcome.getId() + ": Comparison of " + outcome.getLeft().getUrl() + " and " + outcome.getRight().getUrl());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.INFORMATION)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.WARNING)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.ERROR)
            System.out.println(vm.summary());
        for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.FATAL)
            System.out.println(vm.summary());
        System.out.println("done. " + Integer.toString(outcome.getMessages().size()) + " messages");
        System.out.println("=================================================================");
    }
}

Example 90 with AllergyIntolerance

use of org.hl7.fhir.r4.model.AllergyIntolerance in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeAllergyIntoleranceAllergyIntoleranceReactionComponent.

protected void composeAllergyIntoleranceAllergyIntoleranceReactionComponent(Complex parent, String parentType, String name, AllergyIntolerance.AllergyIntoleranceReactionComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "reaction", name, element, index);
    if (element.hasSubstance())
        composeCodeableConcept(t, "AllergyIntolerance", "substance", element.getSubstance(), -1);
    for (int i = 0; i < element.getManifestation().size(); i++) composeCodeableConcept(t, "AllergyIntolerance", "manifestation", element.getManifestation().get(i), i);
    if (element.hasDescriptionElement())
        composeString(t, "AllergyIntolerance", "description", element.getDescriptionElement(), -1);
    if (element.hasOnsetElement())
        composeDateTime(t, "AllergyIntolerance", "onset", element.getOnsetElement(), -1);
    if (element.hasSeverityElement())
        composeEnum(t, "AllergyIntolerance", "severity", element.getSeverityElement(), -1);
    if (element.hasExposureRoute())
        composeCodeableConcept(t, "AllergyIntolerance", "exposureRoute", element.getExposureRoute(), -1);
    for (int i = 0; i < element.getNote().size(); i++) composeAnnotation(t, "AllergyIntolerance", "note", element.getNote().get(i), i);
}