Examples with INACTIVE org.hl7.fhir.r4.model.Consent.ConsentState.INACTIVE used on opensource projects

Example 1 with INACTIVE

use of org.hl7.fhir.r4.model.Consent.ConsentState.INACTIVE in project openmrs-module-fhir2 by openmrs.

the class AllergyIntoleranceTranslatorImplTest method toFhirResource_shouldTranslateVoidedTrueToInactive.

@Test
public void toFhirResource_shouldTranslateVoidedTrueToInactive() {
    omrsAllergy.setVoided(true);
    AllergyIntolerance allergyIntolerance = allergyIntoleranceTranslator.toFhirResource(omrsAllergy);
    assertThat(allergyIntolerance.getClinicalStatus().getCoding().get(0).getCode(), equalTo("inactive"));
    assertThat(allergyIntolerance.getClinicalStatus().getCoding().get(0).getDisplay(), equalTo("Inactive"));
    assertThat(allergyIntolerance.getClinicalStatus().getText(), equalTo("Inactive"));
}

Example 2 with INACTIVE

use of org.hl7.fhir.r4.model.Consent.ConsentState.INACTIVE in project openmrs-module-fhir2 by openmrs.

the class AllergyIntoleranceTranslatorImpl method setClinicalStatus.

private CodeableConcept setClinicalStatus(boolean voided) {
    CodeableConcept status = new CodeableConcept();
    if (voided) {
        status.setText("Inactive");
        status.addCoding(new Coding(FhirConstants.ALLERGY_INTOLERANCE_CLINICAL_STATUS_SYSTEM_URI, "inactive", "Inactive"));
    } else {
        status.setText("Active");
        status.addCoding(new Coding(FhirConstants.ALLERGY_INTOLERANCE_CLINICAL_STATUS_SYSTEM_URI, "active", "Active"));
    }
    return status;
}

Example 3 with INACTIVE

use of org.hl7.fhir.r4.model.Consent.ConsentState.INACTIVE in project openmrs-module-fhir2 by openmrs.

the class ConditionClinicalStatusTranslatorImpl_2_2Test method shouldMapFHIRInActiveToOpenMrsInActive.

@Test
public void shouldMapFHIRInActiveToOpenMrsInActive() {
    CodeableConcept codeableConcept = new CodeableConcept();
    Coding coding = new Coding();
    coding.setCode(INACTIVE);
    coding.setSystem(FhirConstants.CONDITION_CLINICAL_STATUS_SYSTEM_URI);
    codeableConcept.addCoding(coding);
    assertThat(clinicalStatusTranslator.toOpenmrsType(codeableConcept), is(ConditionClinicalStatus.INACTIVE));
}

Example 4 with INACTIVE

use of org.hl7.fhir.r4.model.Consent.ConsentState.INACTIVE in project org.hl7.fhir.core by hapifhir.

the class CCDAConverter method processAllergyProblemAct.

protected void processAllergyProblemAct(ListResource list, Element concern) throws Exception {
    cda.checkTemplateId(concern, "2.16.840.1.113883.10.20.22.4.30");
    // Allergy Problem Act - this is a concern - we treat the concern as information about it's place in the list
    checkNoNegationOrNullFlavor(concern, "Allergy Problem Act");
    checkNoSubject(concern, "Allergy Problem Act");
    // SHALL contain exactly one [1..1] Allergy - intolerance Observation
    for (Element entry : cda.getChildren(concern, "entryRelationship")) {
        Element obs = cda.getChild(entry, "observation");
        cda.checkTemplateId(obs, "2.16.840.1.113883.10.20.22.4.7");
        checkNoNegationOrNullFlavor(obs, "Allergy - intolerance Observation");
        checkNoSubject(obs, "Allergy Problem Act");
        AllergyIntolerance ai = new AllergyIntolerance();
        ListEntryComponent item = addItemToList(list, ai);
        // SHALL contain at least one [1..*] id (CONF:7472).
        for (Element e : cda.getChildren(concern, "id")) ai.getIdentifier().add(convert.makeIdentifierFromII(e));
        // SHALL contain exactly one [1..1] statusCode, which SHALL be selected from ValueSet 2.16.840.1.113883.3.88.12.80.68 HITSPProblemStatus DYNAMIC (CONF:7485)
        // the status code is about the concern (e.g. the entry in the list)
        // possible values: active, suspended, aborted, completed, with an effective time
        String s = cda.getStatus(concern);
        item.setFlag(Factory.newCodeableConcept(s, "http://hl7.org/fhir/v3/ActStatus", s));
        if (// only on this condition?
        s.equals("aborted"))
            item.setDeleted(true);
        // SHALL contain exactly one [1..1] effectiveTime (CONF:7498)
        Period p = convert.makePeriodFromIVL(cda.getChild(concern, "effectiveTime"));
        item.getExtension().add(Factory.newExtension("http://www.healthintersections.com.au/fhir/extensions/list-period", p, false));
        if (p.getEnd() != null)
            item.setDate(p.getEnd());
        else
            item.setDate(p.getStart());
        // SHALL contain at least one [1..*] id (CONF:7382)
        for (Element e : cda.getChildren(obs, "id")) ai.getIdentifier().add(convert.makeIdentifierFromII(e));
        // SHALL contain exactly one [1..1] effectiveTime (CONF:7387)
        ai.getExtension().add(Factory.newExtension("http://www.healthintersections.com.au/fhir/extensions/allergyintolerance-period", convert.makePeriodFromIVL(cda.getChild(obs, "effectiveTime")), false));
        // SHALL contain exactly one [1..1] value with @xsi:type="CD" (CONF:7390)
        CodeableConcept type = convert.makeCodeableConceptFromCD(cda.getChild(obs, "value"));
        // This value SHALL contain @code, which SHALL be selected from ValueSet 2.16.840.1.113883.3.88.12.3221.6.2 Allergy/Adverse Event Type
        String ss = type.getCoding().get(0).getCode();
        if (ss.equals("416098002") || ss.equals("414285001"))
            ai.setType(AllergyIntoleranceType.ALLERGY);
        else if (ss.equals("59037007") || ss.equals("235719002"))
            ai.setType(AllergyIntoleranceType.INTOLERANCE);
        ai.getExtension().add(Factory.newExtension("http://www.healthintersections.com.au/fhir/extensions/allergy-category", type, false));
        // SHOULD contain zero or one [0..1] participant (CONF:7402) such that it
        // ......This playingEntity SHALL contain exactly one [1..1] code
        ai.setCode(convert.makeCodeableConceptFromCD(cda.getDescendent(obs, "participant/participantRole/playingEntity/code")));
        // SHOULD contain zero or more [0..*] entryRelationship (CONF:7447) such that it SHALL contain exactly one [1..1] Reaction Observation (templateId:2.16.840.1.113883.10.20.22.4.9) (CONF:7450).
        for (Element e : cda.getChildren(obs, "entryRelationship")) {
            Element child = cda.getChild(e, "observation");
            if (cda.hasTemplateId(child, "2.16.840.1.113883.10.20.22.4.28") && ai.getClinicalStatus() == null) {
                // SHALL contain exactly one [1..1] value with @xsi:type="CE", where the @code SHALL be selected from ValueSet Problem Status Value Set 2.16.840.1.113883.3.88.12.80.68 DYNAMIC (CONF:7322).
                // 55561003  SNOMED CT  Active
                // 73425007  SNOMED CT  Inactive
                // 413322009  SNOMED CT  Resolved
                String sc = cda.getChild(child, "value").getAttribute("code");
                if (sc.equals("55561003")) {
                    ai.setClinicalStatus(AllergyIntoleranceClinicalStatus.ACTIVE);
                    ai.setVerificationStatus(AllergyIntoleranceVerificationStatus.CONFIRMED);
                } else
                    ai.setClinicalStatus(AllergyIntoleranceClinicalStatus.RESOLVED);
            } else if (cda.hasTemplateId(child, "2.16.840.1.113883.10.20.22.4.9")) {
                ai.getReaction().add(processAdverseReactionObservation(child));
            }
        }
        // SHOULD contain zero or one [0..1] entryRelationship (CONF:9961) such that it SHALL contain exactly one [1..1] Severity Observation (templateId:2.16.840.1.113883.10.20.22.4.8) (CONF:9963).
        ai.setCriticality(readCriticality(cda.getSeverity(obs)));
    }
}

Example 5 with INACTIVE

use of org.hl7.fhir.r4.model.Consent.ConsentState.INACTIVE in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeValueSetValueSetExpansionContainsComponent.

protected void composeValueSetValueSetExpansionContainsComponent(Complex parent, String parentType, String name, ValueSet.ValueSetExpansionContainsComponent element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeBackboneElement(t, "contains", name, element, index);
    if (element.hasSystemElement())
        composeUri(t, "ValueSet", "system", element.getSystemElement(), -1);
    if (element.hasAbstractElement())
        composeBoolean(t, "ValueSet", "abstract", element.getAbstractElement(), -1);
    if (element.hasInactiveElement())
        composeBoolean(t, "ValueSet", "inactive", element.getInactiveElement(), -1);
    if (element.hasVersionElement())
        composeString(t, "ValueSet", "version", element.getVersionElement(), -1);
    if (element.hasCodeElement())
        composeCode(t, "ValueSet", "code", element.getCodeElement(), -1);
    if (element.hasDisplayElement())
        composeString(t, "ValueSet", "display", element.getDisplayElement(), -1);
    for (int i = 0; i < element.getDesignation().size(); i++) composeValueSetConceptReferenceDesignationComponent(t, "ValueSet", "designation", element.getDesignation().get(i), i);
    for (int i = 0; i < element.getContains().size(); i++) composeValueSetValueSetExpansionContainsComponent(t, "ValueSet", "contains", element.getContains().get(i), i);
}