Examples with DocumentReference org.hl7.fhir.r4.model.DocumentReference used on opensource projects

Example 16 with DocumentReference

use of org.hl7.fhir.r4.model.DocumentReference in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeDocumentReference.

protected void composeDocumentReference(Complex parent, String parentType, String name, DocumentReference element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeDomainResource(t, "DocumentReference", name, element, index);
    if (element.hasMasterIdentifier())
        composeIdentifier(t, "DocumentReference", "masterIdentifier", element.getMasterIdentifier(), -1);
    for (int i = 0; i < element.getIdentifier().size(); i++) composeIdentifier(t, "DocumentReference", "identifier", element.getIdentifier().get(i), i);
    if (element.hasSubject())
        composeReference(t, "DocumentReference", "subject", element.getSubject(), -1);
    if (element.hasType())
        composeCodeableConcept(t, "DocumentReference", "type", element.getType(), -1);
    if (element.hasClass_())
        composeCodeableConcept(t, "DocumentReference", "class", element.getClass_(), -1);
    for (int i = 0; i < element.getAuthor().size(); i++) composeReference(t, "DocumentReference", "author", element.getAuthor().get(i), i);
    if (element.hasCustodian())
        composeReference(t, "DocumentReference", "custodian", element.getCustodian(), -1);
    if (element.hasAuthenticator())
        composeReference(t, "DocumentReference", "authenticator", element.getAuthenticator(), -1);
    if (element.hasCreatedElement())
        composeDateTime(t, "DocumentReference", "created", element.getCreatedElement(), -1);
    if (element.hasIndexedElement())
        composeInstant(t, "DocumentReference", "indexed", element.getIndexedElement(), -1);
    if (element.hasStatusElement())
        composeEnum(t, "DocumentReference", "status", element.getStatusElement(), -1);
    if (element.hasDocStatus())
        composeCodeableConcept(t, "DocumentReference", "docStatus", element.getDocStatus(), -1);
    for (int i = 0; i < element.getRelatesTo().size(); i++) composeDocumentReferenceDocumentReferenceRelatesToComponent(t, "DocumentReference", "relatesTo", element.getRelatesTo().get(i), i);
    if (element.hasDescriptionElement())
        composeString(t, "DocumentReference", "description", element.getDescriptionElement(), -1);
    for (int i = 0; i < element.getSecurityLabel().size(); i++) composeCodeableConcept(t, "DocumentReference", "securityLabel", element.getSecurityLabel().get(i), i);
    for (int i = 0; i < element.getContent().size(); i++) composeDocumentReferenceDocumentReferenceContentComponent(t, "DocumentReference", "content", element.getContent().get(i), i);
    if (element.hasContext())
        composeDocumentReferenceDocumentReferenceContextComponent(t, "DocumentReference", "context", element.getContext(), -1);
}

Example 17 with DocumentReference

use of org.hl7.fhir.r4.model.DocumentReference in project org.hl7.fhir.core by hapifhir.

the class TurtleTests method test_documentreference_example.

@Test
public void test_documentreference_example() throws FileNotFoundException, IOException, Exception {
    System.out.println("documentreference-example.ttl");
    new Turtle().parse(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\documentreference-example.ttl"));
}

Example 18 with DocumentReference

use of org.hl7.fhir.r4.model.DocumentReference in project fhir-bridge by ehrbase.

the class DocumentReferenceIT method executeMappingException.

@Override
public Exception executeMappingException(String resource) throws IOException {
    DocumentReference documentReference = (DocumentReference) testFileLoader.loadResource(resource);
    DocumentReferenceToHipDocumentConverter converter = new DocumentReferenceToHipDocumentConverter();
    return assertThrows(ConversionException.class, () -> converter.convert(documentReference));
}

Example 19 with DocumentReference

use of org.hl7.fhir.r4.model.DocumentReference in project eCRNow by drajer-health.

the class EicrServiceImpl method handleReportabilityResponse.

public void handleReportabilityResponse(ReportabilityResponse data, String xRequestId, boolean saveToEhr) {
    logger.debug(" Start processing RR");
    if (data.getRrXml() != null && !data.getRrXml().isEmpty()) {
        logger.debug("Reportability Response: {}, saveToEhr: {}", data.getRrXml(), saveToEhr);
        final CdaRrModel rrModel = rrParser.parse(data.getRrXml());
        final CdaIi rrDocId = rrModel.getRrDocId();
        final CdaIi eicrDocId = rrModel.getEicrDocId();
        if (rrDocId == null || StringUtils.isBlank(rrDocId.getRootValue())) {
            throw new IllegalArgumentException("Reportability response is missing RR_Doc_Id");
        }
        if (eicrDocId == null || StringUtils.isBlank(eicrDocId.getRootValue())) {
            throw new IllegalArgumentException("Reportability response is missing EICR_Doc_Id");
        }
        logger.info("Processing RR_DOC_ID {} of type {} for EICR_DOC_ID {}", rrDocId.getRootValue(), rrModel.getReportableType(), eicrDocId.getRootValue());
        final Eicr ecr = eicrDao.getEicrByDocId(eicrDocId.getRootValue());
        if (ecr != null) {
            logger.info(" Found the ecr for doc Id = {}", eicrDocId.getRootValue());
            ecr.setResponseType(EicrTypes.RrType.REPORTABLE.toString());
            ecr.setResponseDocId(rrDocId.getRootValue());
            ecr.setResponseXRequestId(xRequestId);
            ecr.setResponseData(data.getRrXml());
            if (rrModel.getReportableType() != null)
                ecr.setResponseType(rrModel.getReportableType());
            else
                ecr.setResponseType(CdaRrModel.UNKONWN_RESPONSE_TYPE);
            if (rrModel.getReportableType() != null && rrModel.getReportableStatus() != null)
                ecr.setResponseTypeDisplay(rrModel.getReportableType() + "-" + rrModel.getReportableStatus().getDisplayName());
            else if (rrModel.getReportableType() != null)
                ecr.setResponseTypeDisplay(rrModel.getReportableType());
            else if (rrModel.getReportableStatus() != null)
                ecr.setResponseTypeDisplay(rrModel.getReportableStatus().getDisplayName());
            else
                ecr.setResponseTypeDisplay(CdaRrModel.UNKONWN_RESPONSE_TYPE);
            if (saveToEhr) {
                try {
                    logger.info(" RR Xml and eCR is present hence create a document reference ");
                    DocumentReference docRef = constructDocumentReference(data, ecr);
                    if (docRef != null) {
                        logger.info(" Document Reference created successfully, submitting to Ehr ");
                        submitDocRefToEhr(docRef, ecr);
                    }
                } catch (Exception e) {
                    logger.error(" Error submitting Document Reference to EHR due to exception: {}", e.getMessage());
                    // Save the fact that we could not submit the message to the EHR.
                    ecr.setRrProcStatus(EventTypes.RrProcStatusEnum.FAILED_EHR_SUBMISSION.toString());
                    saveOrUpdate(ecr);
                    throw e;
                }
            }
            saveOrUpdate(ecr);
        } else {
            String errorMsg = "Unable to find Eicr for EICR_DOC_ID: " + eicrDocId.getRootValue();
            logger.error(errorMsg);
            throw new IllegalArgumentException(errorMsg);
        }
    } else {
        String errorMsg = "Received empty RR in request: " + xRequestId;
        logger.error(errorMsg);
        throw new IllegalArgumentException(errorMsg);
    }
}

Example 20 with DocumentReference

use of org.hl7.fhir.r4.model.DocumentReference in project nia-patient-switching-standard-adaptor by NHSDigital.

the class DocumentReferenceMapper method mapDocumentReference.

private DocumentReference mapDocumentReference(RCMRMT030101UK04NarrativeStatement narrativeStatement, RCMRMT030101UK04EhrComposition ehrComposition, Patient patient, RCMRMT030101UK04EhrExtract ehrExtract, List<Encounter> encounterList, Organization organization) {
    DocumentReference documentReference = new DocumentReference();
    var id = narrativeStatement.getReference().get(0).getReferredToExternalDocument().getId().getRoot();
    documentReference.addIdentifier(buildIdentifier(id, organization.getIdentifierFirstRep().getValue()));
    documentReference.setId(id);
    documentReference.getMeta().addProfile(META_PROFILE);
    documentReference.setStatus(DocumentReferenceStatus.CURRENT);
    documentReference.setType(getType(narrativeStatement));
    documentReference.setSubject(new Reference(patient));
    documentReference.setIndexedElement(getIndexed(ehrExtract));
    documentReference.setDescription(buildDescription(narrativeStatement));
    documentReference.setCustodian(new Reference(organization));
    getAuthor(narrativeStatement, ehrComposition).ifPresent(documentReference::addAuthor);
    if (narrativeStatement.hasAvailabilityTime() && narrativeStatement.getAvailabilityTime().hasValue()) {
        documentReference.setCreatedElement(DateFormatUtil.parseToDateTimeType(narrativeStatement.getAvailabilityTime().getValue()));
    }
    var encounterReference = encounterList.stream().filter(encounter -> encounter.getId().equals(ehrComposition.getId().getRoot())).findFirst().map(Reference::new);
    if (encounterReference.isPresent()) {
        DocumentReference.DocumentReferenceContextComponent documentReferenceContextComponent = new DocumentReference.DocumentReferenceContextComponent().setEncounter(encounterReference.get());
        documentReference.setContext(documentReferenceContextComponent);
    }
    setContentAttachments(documentReference, narrativeStatement);
    return documentReference;
}