Examples with FINISHED org.hl7.fhir.r4.model.Encounter.EncounterStatus.FINISHED used on opensource projects

Example 11 with FINISHED

use of org.hl7.fhir.r4.model.Encounter.EncounterStatus.FINISHED in project synthea by synthetichealth.

the class FhirR4 method encounter.

/**
 * Map the given Encounter into a FHIR Encounter resource, and add it to the given Bundle.
 *
 * @param personEntry Entry for the Person
 * @param bundle      The Bundle to add to
 * @param encounter   The current Encounter
 * @return The added Entry
 */
private static BundleEntryComponent encounter(Person person, BundleEntryComponent personEntry, Bundle bundle, Encounter encounter) {
    org.hl7.fhir.r4.model.Encounter encounterResource = new org.hl7.fhir.r4.model.Encounter();
    if (USE_US_CORE_IG) {
        Meta meta = new Meta();
        meta.addProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-encounter");
        encounterResource.setMeta(meta);
    } else if (USE_SHR_EXTENSIONS) {
        encounterResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-encounter-EncounterPerformed"));
        Extension performedContext = new Extension();
        performedContext.setUrl(SHR_EXT + "shr-action-PerformedContext-extension");
        performedContext.addExtension(SHR_EXT + "shr-action-Status-extension", new CodeType("finished"));
        encounterResource.addExtension(performedContext);
    }
    Patient patient = (Patient) personEntry.getResource();
    encounterResource.setSubject(new Reference().setReference(personEntry.getFullUrl()).setDisplay(patient.getNameFirstRep().getNameAsSingleString()));
    encounterResource.setStatus(EncounterStatus.FINISHED);
    if (encounter.codes.isEmpty()) {
        // wellness encounter
        encounterResource.addType().addCoding().setCode("185349003").setDisplay("Encounter for check up").setSystem(SNOMED_URI);
    } else {
        Code code = encounter.codes.get(0);
        encounterResource.addType(mapCodeToCodeableConcept(code, SNOMED_URI));
    }
    Coding classCode = new Coding();
    classCode.setCode(EncounterType.fromString(encounter.type).code());
    classCode.setSystem("http://terminology.hl7.org/CodeSystem/v3-ActCode");
    encounterResource.setClass_(classCode);
    encounterResource.setPeriod(new Period().setStart(new Date(encounter.start)).setEnd(new Date(encounter.stop)));
    if (encounter.reason != null) {
        encounterResource.addReasonCode().addCoding().setCode(encounter.reason.code).setDisplay(encounter.reason.display).setSystem(SNOMED_URI);
    }
    Provider provider = encounter.provider;
    if (provider == null) {
        // no associated provider, patient goes to wellness provider
        provider = person.getProvider(EncounterType.WELLNESS, encounter.start);
    }
    if (TRANSACTION_BUNDLE) {
        encounterResource.setServiceProvider(new Reference(ExportHelper.buildFhirSearchUrl("Organization", provider.getResourceID())));
    } else {
        String providerFullUrl = findProviderUrl(provider, bundle);
        if (providerFullUrl != null) {
            encounterResource.setServiceProvider(new Reference(providerFullUrl));
        } else {
            BundleEntryComponent providerOrganization = provider(person, bundle, provider);
            encounterResource.setServiceProvider(new Reference(providerOrganization.getFullUrl()));
        }
    }
    encounterResource.getServiceProvider().setDisplay(provider.name);
    if (USE_US_CORE_IG) {
        String referenceUrl;
        String display;
        if (TRANSACTION_BUNDLE) {
            if (encounter.type.equals(EncounterType.VIRTUAL.toString())) {
                referenceUrl = ExportHelper.buildFhirSearchUrl("Location", FhirR4PatientHome.getPatientHome().getId());
                display = "Patient's Home";
            } else {
                referenceUrl = ExportHelper.buildFhirSearchUrl("Location", provider.getResourceLocationID());
                display = provider.name;
            }
        } else {
            if (encounter.type.equals(EncounterType.VIRTUAL.toString())) {
                referenceUrl = addPatientHomeLocation(bundle);
                display = "Patient's Home";
            } else {
                referenceUrl = findLocationUrl(provider, bundle);
                display = provider.name;
            }
        }
        encounterResource.addLocation().setLocation(new Reference().setReference(referenceUrl).setDisplay(display));
    }
    if (encounter.clinician != null) {
        if (TRANSACTION_BUNDLE) {
            encounterResource.addParticipant().setIndividual(new Reference(ExportHelper.buildFhirNpiSearchUrl(encounter.clinician)));
        } else {
            String practitionerFullUrl = findPractitioner(encounter.clinician, bundle);
            if (practitionerFullUrl != null) {
                encounterResource.addParticipant().setIndividual(new Reference(practitionerFullUrl));
            } else {
                BundleEntryComponent practitioner = practitioner(person, bundle, encounter.clinician);
                encounterResource.addParticipant().setIndividual(new Reference(practitioner.getFullUrl()));
            }
        }
        encounterResource.getParticipantFirstRep().getIndividual().setDisplay(encounter.clinician.getFullname());
        encounterResource.getParticipantFirstRep().addType(mapCodeToCodeableConcept(new Code("http://terminology.hl7.org/CodeSystem/v3-ParticipationType", "PPRF", "primary performer"), null));
        encounterResource.getParticipantFirstRep().setPeriod(encounterResource.getPeriod());
    }
    if (encounter.discharge != null) {
        EncounterHospitalizationComponent hospitalization = new EncounterHospitalizationComponent();
        Code dischargeDisposition = new Code(DISCHARGE_URI, encounter.discharge.code, encounter.discharge.display);
        hospitalization.setDischargeDisposition(mapCodeToCodeableConcept(dischargeDisposition, DISCHARGE_URI));
        encounterResource.setHospitalization(hospitalization);
    }
    BundleEntryComponent entry = newEntry(person, bundle, encounterResource);
    if (USE_US_CORE_IG) {
        // US Core Encounters should have an identifier to support the required
        // Encounter.identifier search parameter
        encounterResource.addIdentifier().setUse(IdentifierUse.OFFICIAL).setSystem(SYNTHEA_IDENTIFIER).setValue(encounterResource.getId());
    }
    return entry;
}

Example 12 with FINISHED

use of org.hl7.fhir.r4.model.Encounter.EncounterStatus.FINISHED in project synthea by synthetichealth.

the class FhirR4 method provenance.

/**
 * Create a Provenance entry at the end of this Bundle that
 * targets all the entries in the Bundle.
 *
 * @param bundle The finished complete Bundle.
 * @param person The person.
 * @param stopTime The time the simulation stopped.
 * @return BundleEntryComponent containing a Provenance resource.
 */
private static BundleEntryComponent provenance(Bundle bundle, Person person, long stopTime) {
    Provenance provenance = new Provenance();
    if (USE_US_CORE_IG) {
        Meta meta = new Meta();
        meta.addProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-provenance");
        provenance.setMeta(meta);
    }
    for (BundleEntryComponent entry : bundle.getEntry()) {
        provenance.addTarget(new Reference(entry.getFullUrl()));
    }
    provenance.setRecorded(new Date(stopTime));
    // Provenance sources...
    int index = person.record.encounters.size() - 1;
    Clinician clinician = null;
    while (index >= 0 && clinician == null) {
        clinician = person.record.encounters.get(index).clinician;
        index--;
    }
    String clinicianDisplay = null;
    if (clinician != null) {
        clinicianDisplay = clinician.getFullname();
    }
    String practitionerFullUrl = TRANSACTION_BUNDLE ? ExportHelper.buildFhirNpiSearchUrl(clinician) : findPractitioner(clinician, bundle);
    Provider providerOrganization = person.record.provider;
    if (providerOrganization == null) {
        providerOrganization = person.getProvider(EncounterType.WELLNESS, stopTime);
    }
    String organizationFullUrl = TRANSACTION_BUNDLE ? ExportHelper.buildFhirSearchUrl("Organization", providerOrganization.getResourceID()) : findProviderUrl(providerOrganization, bundle);
    // Provenance Author...
    ProvenanceAgentComponent agent = provenance.addAgent();
    agent.setType(mapCodeToCodeableConcept(new Code("http://terminology.hl7.org/CodeSystem/provenance-participant-type", "author", "Author"), null));
    agent.setWho(new Reference().setReference(practitionerFullUrl).setDisplay(clinicianDisplay));
    agent.setOnBehalfOf(new Reference().setReference(organizationFullUrl).setDisplay(providerOrganization.name));
    // Provenance Transmitter...
    agent = provenance.addAgent();
    agent.setType(mapCodeToCodeableConcept(new Code("http://hl7.org/fhir/us/core/CodeSystem/us-core-provenance-participant-type", "transmitter", "Transmitter"), null));
    agent.setWho(new Reference().setReference(practitionerFullUrl).setDisplay(clinicianDisplay));
    agent.setOnBehalfOf(new Reference().setReference(organizationFullUrl).setDisplay(providerOrganization.name));
    return newEntry(person, bundle, provenance);
}

Example 13 with FINISHED

use of org.hl7.fhir.r4.model.Encounter.EncounterStatus.FINISHED in project synthea by synthetichealth.

the class FhirStu3 method encounter.

/**
 * Map the given Encounter into a FHIR Encounter resource, and add it to the given Bundle.
 *
 * @param personEntry Entry for the Person
 * @param bundle The Bundle to add to
 * @param encounter The current Encounter
 * @return The added Entry
 */
private static BundleEntryComponent encounter(Person person, BundleEntryComponent personEntry, Bundle bundle, Encounter encounter) {
    org.hl7.fhir.dstu3.model.Encounter encounterResource = new org.hl7.fhir.dstu3.model.Encounter();
    encounterResource.setSubject(new Reference(personEntry.getFullUrl()));
    encounterResource.setStatus(EncounterStatus.FINISHED);
    if (encounter.codes.isEmpty()) {
        // wellness encounter
        encounterResource.addType().addCoding().setCode("185349003").setDisplay("Encounter for check up").setSystem(SNOMED_URI);
    } else {
        Code code = encounter.codes.get(0);
        encounterResource.addType(mapCodeToCodeableConcept(code, SNOMED_URI));
    }
    Coding classCode = new Coding();
    classCode.setCode(EncounterType.fromString(encounter.type).code());
    classCode.setSystem("http://terminology.hl7.org/CodeSystem/v3-ActCode");
    encounterResource.setClass_(classCode);
    encounterResource.setPeriod(new Period().setStart(new Date(encounter.start)).setEnd(new Date(encounter.stop)));
    if (encounter.reason != null) {
        encounterResource.addReason().addCoding().setCode(encounter.reason.code).setDisplay(encounter.reason.display).setSystem(SNOMED_URI);
    }
    Provider provider = encounter.provider;
    if (provider == null) {
        // no associated provider, patient goes to wellness provider
        provider = person.getProvider(EncounterType.WELLNESS, encounter.start);
    }
    if (TRANSACTION_BUNDLE) {
        encounterResource.setServiceProvider(new Reference(ExportHelper.buildFhirSearchUrl("Organization", provider.getResourceID())));
    } else {
        String providerFullUrl = findProviderUrl(provider, bundle);
        if (providerFullUrl != null) {
            encounterResource.setServiceProvider(new Reference(providerFullUrl));
        } else {
            BundleEntryComponent providerOrganization = provider(bundle, provider);
            encounterResource.setServiceProvider(new Reference(providerOrganization.getFullUrl()));
        }
    }
    encounterResource.getServiceProvider().setDisplay(provider.name);
    if (encounter.clinician != null) {
        if (TRANSACTION_BUNDLE) {
            encounterResource.addParticipant().setIndividual(new Reference(ExportHelper.buildFhirNpiSearchUrl(encounter.clinician)));
        } else {
            String practitionerFullUrl = findPractitioner(encounter.clinician, bundle);
            if (practitionerFullUrl != null) {
                encounterResource.addParticipant().setIndividual(new Reference(practitionerFullUrl));
            } else {
                BundleEntryComponent practitioner = practitioner(bundle, encounter.clinician);
                encounterResource.addParticipant().setIndividual(new Reference(practitioner.getFullUrl()));
            }
        }
        encounterResource.getParticipantFirstRep().getIndividual().setDisplay(encounter.clinician.getFullname());
    }
    if (encounter.discharge != null) {
        EncounterHospitalizationComponent hospitalization = new EncounterHospitalizationComponent();
        Code dischargeDisposition = new Code(DISCHARGE_URI, encounter.discharge.code, encounter.discharge.display);
        hospitalization.setDischargeDisposition(mapCodeToCodeableConcept(dischargeDisposition, DISCHARGE_URI));
        encounterResource.setHospitalization(hospitalization);
    }
    if (USE_SHR_EXTENSIONS) {
        encounterResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-encounter-EncounterPerformed"));
        // required fields for this profile are status & action-PerformedContext-extension
        Extension performedContext = new Extension();
        performedContext.setUrl(SHR_EXT + "shr-action-PerformedContext-extension");
        performedContext.addExtension(SHR_EXT + "shr-action-Status-extension", new CodeType("finished"));
        encounterResource.addExtension(performedContext);
    }
    return newEntry(person, bundle, encounterResource);
}

Example 14 with FINISHED

use of org.hl7.fhir.r4.model.Encounter.EncounterStatus.FINISHED in project cqf-ruler by DBCG.

the class CodeSystemProviderIT method testDSTU3RxNormCodeSystemUpdateById.

@Test
@Order(3)
public void testDSTU3RxNormCodeSystemUpdateById() throws IOException {
    log.info("Beginning Test DSTU3 RxNorm CodeSystemUpdate");
    ValueSet vs = (ValueSet) loadResource("org/opencds/cqf/ruler/devtools/dstu3/valueset/AntithromboticTherapy.json");
    assertEquals(0, performCodeSystemSearchByUrl(rxNormUrl).size());
    OperationOutcome outcome = codeSystemUpdateProvider.updateCodeSystems(vs.getIdElement());
    for (OperationOutcomeIssueComponent issue : outcome.getIssue()) {
        assertEquals(OperationOutcome.IssueSeverity.INFORMATION, issue.getSeverity());
        assertTrue(issue.getDetails().getText().startsWith("Successfully updated the following CodeSystems: "));
        assertTrue(issue.getDetails().getText().contains("rxnorm"));
    }
    assertEquals(1, performCodeSystemSearchByUrl(rxNormUrl).size());
    log.info("Finished Test DSTU3 RxNorm CodeSystemUpdate");
}

Example 15 with FINISHED

use of org.hl7.fhir.r4.model.Encounter.EncounterStatus.FINISHED in project cqf-ruler by DBCG.

the class CodeSystemProviderIT method testDSTU3ICD10PerformCodeSystemUpdateByList.

@Test
@Order(4)
public void testDSTU3ICD10PerformCodeSystemUpdateByList() throws IOException {
    log.info("Beginning Test DSTU3 ICD10 CodeSystemUpdate");
    BufferedReader reader = new BufferedReader(new InputStreamReader(CodeSystemProviderIT.class.getResourceAsStream("valueset" + "/" + "AllPrimaryandSecondaryCancer.json")));
    String resourceString = reader.lines().collect(Collectors.joining(System.lineSeparator()));
    reader.close();
    ValueSet vs = (ValueSet) loadResource("json", resourceString);
    assertEquals(0, performCodeSystemSearchByUrl(icd10).size());
    codeSystemUpdateProvider.performCodeSystemUpdate(Arrays.asList(vs));
    OperationOutcome outcome = codeSystemUpdateProvider.updateCodeSystems(vs.getIdElement());
    for (OperationOutcomeIssueComponent issue : outcome.getIssue()) {
        assertEquals(OperationOutcome.IssueSeverity.INFORMATION, issue.getSeverity());
        assertTrue(issue.getDetails().getText().startsWith("Successfully updated the following CodeSystems: "));
        assertTrue(issue.getDetails().getText().contains("icd-10"));
    }
    assertEquals(1, performCodeSystemSearchByUrl(icd10).size());
    log.info("Finished Test DSTU3 ICD10 CodeSystemUpdate");
}