Examples with MedicationIngredientComponent org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent used on opensource projects

Example 1 with MedicationIngredientComponent

use of org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent in project pathling by aehrc.

the class TestData method newMedication.

/**
 * Returns a FHIR medication to be contained to a medication request for testing purposes.
 */
public static Medication newMedication() {
    final Medication medication = new Medication();
    medication.setId("test-med");
    final MedicationIngredientComponent ingredient = new MedicationIngredientComponent();
    final CodeableConcept item = new CodeableConcept();
    item.addCoding().setSystem("test/ingredient/system").setCode("test-code");
    ingredient.setItem(item);
    medication.addIngredient(ingredient);
    return medication;
}

Example 2 with MedicationIngredientComponent

use of org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent in project eCRNow by drajer-health.

the class CdaFhirUtilities method getStringForMedicationFromContainedResources.

public static String getStringForMedicationFromContainedResources(List<Resource> resources, String refId) {
    Pair<String, Boolean> retVal = null;
    for (Resource res : resources) {
        logger.debug("res.getId {}", res.getId());
        if (res.getId().contains(refId) && res instanceof Medication) {
            logger.debug("Found a Contained Resource with Id {}", refId);
            Medication cmed = (Medication) res;
            if (cmed.getCode() != null) {
                logger.debug("Found Contained Med  Code");
                retVal = getCodeableConceptDisplayForCodeSystem(cmed.getCode(), CdaGeneratorConstants.FHIR_RXNORM_URL, false);
            }
            if (retVal.getValue0().isEmpty()) {
                logger.debug("Return Val is empty");
                if (cmed.getIngredient() != null) {
                    logger.debug("Found ingredient");
                    List<MedicationIngredientComponent> ings = cmed.getIngredient();
                    for (MedicationIngredientComponent ing : ings) {
                        if (ing.getItem() instanceof CodeableConcept) {
                            logger.debug("Found a CC for Ingredient");
                            CodeableConcept cc = (CodeableConcept) ing.getItem();
                            retVal = getCodeableConceptDisplayForCodeSystem(cc, CdaGeneratorConstants.FHIR_RXNORM_URL, false);
                            break;
                        }
                    }
                }
            }
            if (!retVal.getValue0().isEmpty())
                return retVal.getValue0();
        }
    // Found id
    }
    return CdaGeneratorConstants.UNKNOWN_VALUE;
}

Example 3 with MedicationIngredientComponent

use of org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent in project bunsen by cerner.

the class TestData method newMedication.

/**
 * Returns a new Medication for testing.
 *
 * @return a FHIR Medication for testing.
 */
public static Medication newMedication(String id) {
    Medication medication = new Medication();
    medication.setId(id);
    CodeableConcept itemCodeableConcept = new CodeableConcept();
    itemCodeableConcept.addCoding().setSystem("http://www.nlm.nih.gov/research/umls/rxnorm").setCode("103109").setDisplay("Vitamin E 3 MG Oral Tablet [Ephynal]").setUserSelected(true);
    MedicationIngredientComponent ingredientComponent = new MedicationIngredientComponent();
    ingredientComponent.setItem(itemCodeableConcept);
    medication.addIngredient(ingredientComponent);
    Reference itemReference = new Reference("test-item-reference");
    MedicationPackageContentComponent medicationPackageContentComponent = new MedicationPackageContentComponent();
    medicationPackageContentComponent.setItem(itemReference);
    MedicationPackageComponent medicationPackageComponent = new MedicationPackageComponent();
    medicationPackageComponent.addContent(medicationPackageContentComponent);
    medication.setPackage(medicationPackageComponent);
    return medication;
}

Example 4 with MedicationIngredientComponent

use of org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent in project eCRNow by drajer-health.

the class CdaMedicationGenerator method getValidMedicationRequests.

public static List<MedicationRequest> getValidMedicationRequests(R4FhirData data, List<Medication> cmeds) {
    List<MedicationRequest> mr = new ArrayList<>();
    if (data.getMedicationRequests() != null && !data.getMedicationRequests().isEmpty()) {
        logger.debug("Total num of Medication Requests available for Patient {}", data.getMedicationRequests().size());
        for (MedicationRequest m : data.getMedicationRequests()) {
            if (m.getMedication() instanceof Reference) {
                Reference med = (Reference) m.getMedication();
                if (med.getReference().startsWith(CdaGeneratorConstants.FHIR_CONTAINED_REFERENCE)) {
                    // Check contained.
                    String refId = med.getReference().substring(1);
                    if (m.getContained() != null) {
                        List<Resource> meds = m.getContained();
                        for (Resource r : meds) {
                            logger.debug("starting to examine contained meds ");
                            if (r.getId().contains(refId) && r instanceof Medication) {
                                Medication cmed = (Medication) r;
                                if (cmed.getCode() != null && cmed.getCode().getCoding() != null && !cmed.getCode().getCoding().isEmpty() && CdaFhirUtilities.isCodingPresentForCodeSystem(cmed.getCode().getCoding(), CdaGeneratorConstants.FHIR_RXNORM_URL)) {
                                    // Found the Medication that matters.
                                    logger.debug("Adding Med Req - due to code ");
                                    cmeds.add(cmed);
                                    mr.add(m);
                                    break;
                                }
                                // if code present
                                Boolean found = false;
                                // Check Ingredients also.
                                if (cmed.getIngredient() != null) {
                                    List<MedicationIngredientComponent> ings = cmed.getIngredient();
                                    for (MedicationIngredientComponent ing : ings) {
                                        logger.debug("starting to examine contained ingredients ");
                                        if (ing.getItem() instanceof CodeableConcept) {
                                            CodeableConcept cc = (CodeableConcept) ing.getItem();
                                            if (cc.getCoding() != null && !cc.getCoding().isEmpty() && CdaFhirUtilities.isCodingPresentForCodeSystem(cc.getCoding(), CdaGeneratorConstants.FHIR_RXNORM_URL)) {
                                                logger.debug("Adding Med Req due to ingredient ");
                                                cmeds.add(cmed);
                                                mr.add(m);
                                                found = true;
                                                break;
                                            }
                                        // Code check.
                                        }
                                    // Ingredient is a Codeable Concept
                                    }
                                // Ingredients present
                                }
                                if (found)
                                    break;
                            }
                        // Found id
                        }
                    // For all resources
                    }
                // contained present
                } else // Contained reference
                {
                // Check the actual medication if desired in the future.
                }
            } else if (m.getMedication() instanceof CodeableConcept) {
                CodeableConcept cc = (CodeableConcept) m.getMedication();
                if (cc.getCoding() != null && !cc.getCoding().isEmpty() && CdaFhirUtilities.isCodingPresentForCodeSystem(cc.getCoding(), CdaGeneratorConstants.FHIR_RXNORM_URL)) {
                    logger.debug("Found a Medication Request with a RxNorm code");
                    mr.add(m);
                }
            }
        }
    } else {
        logger.debug("No Valid Medication Requests in the bundle to process");
    }
    return mr;
}

Example 5 with MedicationIngredientComponent

use of org.hl7.fhir.r4.model.Medication.MedicationIngredientComponent in project eCRNow by drajer-health.

the class CdaFhirUtilities method getXmlForMedicationTypeForCodeSystem.

public static String getXmlForMedicationTypeForCodeSystem(Type dt, String elName, Boolean valFlag, String codeSystemUrl, Boolean csOptional, DomainResource res) {
    if (dt instanceof Reference) {
        logger.debug("Found Medication of Type Reference within Domain Resource");
        Reference med = (Reference) dt;
        String codeXml = "";
        if (med.getReference().startsWith(CdaGeneratorConstants.FHIR_CONTAINED_REFERENCE)) {
            // Check contained.
            String refId = med.getReference().substring(1);
            logger.debug("Found Medication of Type Reference with Id {}", refId);
            if (res.getContained() != null) {
                logger.debug("Contained Elements Not null");
                List<Resource> meds = res.getContained();
                for (Resource r : meds) {
                    if (r.getId().contains(refId) && r instanceof Medication) {
                        logger.debug("Found Medication in contained resource");
                        Medication cmed = (Medication) r;
                        if (cmed.getCode() != null && cmed.getCode().getCoding() != null && !cmed.getCode().getCoding().isEmpty() && CdaFhirUtilities.isCodingPresentForCodeSystem(cmed.getCode().getCoding(), CdaGeneratorConstants.FHIR_RXNORM_URL)) {
                            logger.debug("Found Medication for code system in code element");
                            // Found the Medication that matters.
                            codeXml = getXmlForTypeForCodeSystem(cmed.getCode(), elName, valFlag, codeSystemUrl, csOptional);
                        } else // if code present
                        {
                            if (cmed.getIngredient() != null) {
                                logger.debug("Found Ingredients");
                                List<MedicationIngredientComponent> ings = cmed.getIngredient();
                                for (MedicationIngredientComponent ing : ings) {
                                    if (ing.getItem() instanceof CodeableConcept) {
                                        logger.debug("Found Ingredient which is coded");
                                        CodeableConcept cc = (CodeableConcept) ing.getItem();
                                        if (cc.getCoding() != null && !cc.getCoding().isEmpty() && CdaFhirUtilities.isCodingPresentForCodeSystem(cc.getCoding(), CdaGeneratorConstants.FHIR_RXNORM_URL)) {
                                            codeXml = getXmlForTypeForCodeSystem(cc, elName, valFlag, codeSystemUrl, csOptional);
                                            break;
                                        }
                                    }
                                }
                            }
                        }
                    }
                // contained med
                }
            // for all contained resources
            }
        // contained present
        } else // Contained reference
        {
        // Check the actual medication
        }
        return codeXml;
    } else
        return getXmlForTypeForCodeSystem(dt, elName, valFlag, codeSystemUrl, csOptional);
}