Examples with COMPLETED org.hl7.fhir.r4.model.Procedure.ProcedureStatus.COMPLETED used on opensource projects

Example 26 with COMPLETED

use of org.hl7.fhir.r4.model.Procedure.ProcedureStatus.COMPLETED in project synthea by synthetichealth.

the class FhirR4 method immunization.

private static BundleEntryComponent immunization(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, HealthRecord.Entry immunization) {
    Immunization immResource = new Immunization();
    if (USE_US_CORE_IG) {
        Meta meta = new Meta();
        meta.addProfile("http://hl7.org/fhir/us/core/StructureDefinition/us-core-immunization");
        immResource.setMeta(meta);
    } else if (USE_SHR_EXTENSIONS) {
        immResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-immunization-ImmunizationGiven"));
        Extension performedContext = new Extension();
        performedContext.setUrl(SHR_EXT + "shr-action-PerformedContext-extension");
        performedContext.addExtension(SHR_EXT + "shr-action-Status-extension", new CodeType("completed"));
        immResource.addExtension(performedContext);
    }
    immResource.setStatus(ImmunizationStatus.COMPLETED);
    immResource.setOccurrence(convertFhirDateTime(immunization.start, true));
    immResource.setVaccineCode(mapCodeToCodeableConcept(immunization.codes.get(0), CVX_URI));
    immResource.setPrimarySource(true);
    immResource.setPatient(new Reference(personEntry.getFullUrl()));
    immResource.setEncounter(new Reference(encounterEntry.getFullUrl()));
    if (USE_US_CORE_IG) {
        org.hl7.fhir.r4.model.Encounter encounterResource = (org.hl7.fhir.r4.model.Encounter) encounterEntry.getResource();
        immResource.setLocation(encounterResource.getLocationFirstRep().getLocation());
    }
    BundleEntryComponent immunizationEntry = newEntry(rand, bundle, immResource);
    immunization.fullUrl = immunizationEntry.getFullUrl();
    return immunizationEntry;
}

Example 27 with COMPLETED

use of org.hl7.fhir.r4.model.Procedure.ProcedureStatus.COMPLETED in project synthea by synthetichealth.

the class FhirStu3 method immunization.

private static BundleEntryComponent immunization(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, HealthRecord.Entry immunization) {
    Immunization immResource = new Immunization();
    immResource.setStatus(ImmunizationStatus.COMPLETED);
    immResource.setDate(new Date(immunization.start));
    immResource.setVaccineCode(mapCodeToCodeableConcept(immunization.codes.get(0), CVX_URI));
    immResource.setNotGiven(false);
    immResource.setPrimarySource(true);
    immResource.setPatient(new Reference(personEntry.getFullUrl()));
    immResource.setEncounter(new Reference(encounterEntry.getFullUrl()));
    if (USE_SHR_EXTENSIONS) {
        immResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-immunization-ImmunizationGiven"));
        // profile requires action-PerformedContext-extension, status, notGiven, vaccineCode, patient,
        // date, primarySource
        Extension performedContext = new Extension();
        performedContext.setUrl(SHR_EXT + "shr-action-PerformedContext-extension");
        performedContext.addExtension(SHR_EXT + "shr-action-Status-extension", new CodeType("completed"));
        immResource.addExtension(performedContext);
    }
    BundleEntryComponent immunizationEntry = newEntry(rand, bundle, immResource);
    immunization.fullUrl = immunizationEntry.getFullUrl();
    return immunizationEntry;
}

Example 28 with COMPLETED

use of org.hl7.fhir.r4.model.Procedure.ProcedureStatus.COMPLETED in project synthea by synthetichealth.

the class FhirStu3 method medicationAdministration.

/**
 * Add a MedicationAdministration if needed for the given medication.
 *
 * @param rand Source of randomness to use when generating ids etc
 * @param personEntry       The Entry for the Person
 * @param bundle            Bundle to add the MedicationAdministration to
 * @param encounterEntry    Current Encounter entry
 * @param medication        The Medication
 * @param medicationRequest The related medicationRequest
 * @return The added Entry
 */
private static BundleEntryComponent medicationAdministration(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, Medication medication, MedicationRequest medicationRequest) {
    MedicationAdministration medicationResource = new MedicationAdministration();
    medicationResource.setSubject(new Reference(personEntry.getFullUrl()));
    medicationResource.setContext(new Reference(encounterEntry.getFullUrl()));
    Code code = medication.codes.get(0);
    String system = code.system.equals("SNOMED-CT") ? SNOMED_URI : RXNORM_URI;
    medicationResource.setMedication(mapCodeToCodeableConcept(code, system));
    medicationResource.setEffective(new DateTimeType(new Date(medication.start)));
    medicationResource.setStatus(MedicationAdministrationStatus.fromCode("completed"));
    if (medication.prescriptionDetails != null) {
        JsonObject rxInfo = medication.prescriptionDetails;
        MedicationAdministrationDosageComponent dosage = new MedicationAdministrationDosageComponent();
        // as_needed is true if present
        if ((rxInfo.has("dosage")) && (!rxInfo.has("as_needed"))) {
            Quantity dose = new SimpleQuantity().setValue(rxInfo.get("dosage").getAsJsonObject().get("amount").getAsDouble());
            dosage.setDose((SimpleQuantity) dose);
            if (rxInfo.has("instructions")) {
                for (JsonElement instructionElement : rxInfo.get("instructions").getAsJsonArray()) {
                    JsonObject instruction = instructionElement.getAsJsonObject();
                    dosage.setText(instruction.get("display").getAsString());
                }
            }
        }
        medicationResource.setDosage(dosage);
    }
    if (!medication.reasons.isEmpty()) {
        // Only one element in list
        Code reason = medication.reasons.get(0);
        for (BundleEntryComponent entry : bundle.getEntry()) {
            if (entry.getResource().fhirType().equals("Condition")) {
                Condition condition = (Condition) entry.getResource();
                // Only one element in list
                Coding coding = condition.getCode().getCoding().get(0);
                if (reason.code.equals(coding.getCode())) {
                    medicationResource.addReasonReference().setReference(entry.getFullUrl());
                }
            }
        }
    }
    BundleEntryComponent medicationAdminEntry = newEntry(rand, bundle, medicationResource);
    return medicationAdminEntry;
}

Example 29 with COMPLETED

use of org.hl7.fhir.r4.model.Procedure.ProcedureStatus.COMPLETED in project synthea by synthetichealth.

the class FhirStu3 method medication.

/**
 * Map the given Medication to a FHIR MedicationRequest resource, and add it to the given Bundle.
 *
 * @param rand Source of randomness to use when generating ids etc
 * @param personEntry The Entry for the Person
 * @param bundle Bundle to add the Medication to
 * @param encounterEntry Current Encounter entry
 * @param medication The Medication
 * @return The added Entry
 */
private static BundleEntryComponent medication(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, Medication medication) {
    MedicationRequest medicationResource = new MedicationRequest();
    medicationResource.setSubject(new Reference(personEntry.getFullUrl()));
    medicationResource.setContext(new Reference(encounterEntry.getFullUrl()));
    Code code = medication.codes.get(0);
    String system = code.system.equals("SNOMED-CT") ? SNOMED_URI : RXNORM_URI;
    medicationResource.setMedication(mapCodeToCodeableConcept(code, system));
    medicationResource.setAuthoredOn(new Date(medication.start));
    medicationResource.setIntent(MedicationRequestIntent.ORDER);
    org.hl7.fhir.dstu3.model.Encounter encounter = (org.hl7.fhir.dstu3.model.Encounter) encounterEntry.getResource();
    MedicationRequestRequesterComponent requester = new MedicationRequestRequesterComponent();
    requester.setAgent(encounter.getParticipantFirstRep().getIndividual());
    requester.setOnBehalfOf(encounter.getServiceProvider());
    medicationResource.setRequester(requester);
    if (medication.stop != 0L) {
        medicationResource.setStatus(MedicationRequestStatus.STOPPED);
    } else {
        medicationResource.setStatus(MedicationRequestStatus.ACTIVE);
    }
    if (!medication.reasons.isEmpty()) {
        // Only one element in list
        Code reason = medication.reasons.get(0);
        for (BundleEntryComponent entry : bundle.getEntry()) {
            if (entry.getResource().fhirType().equals("Condition")) {
                Condition condition = (Condition) entry.getResource();
                // Only one element in list
                Coding coding = condition.getCode().getCoding().get(0);
                if (reason.code.equals(coding.getCode())) {
                    medicationResource.addReasonReference().setReference(entry.getFullUrl());
                }
            }
        }
    }
    if (medication.prescriptionDetails != null) {
        JsonObject rxInfo = medication.prescriptionDetails;
        Dosage dosage = new Dosage();
        dosage.setSequence(1);
        // as_needed is true if present
        dosage.setAsNeeded(new BooleanType(rxInfo.has("as_needed")));
        // as_needed is true if present
        if ((rxInfo.has("dosage")) && (!rxInfo.has("as_needed"))) {
            Timing timing = new Timing();
            TimingRepeatComponent timingRepeatComponent = new TimingRepeatComponent();
            timingRepeatComponent.setFrequency(rxInfo.get("dosage").getAsJsonObject().get("frequency").getAsInt());
            timingRepeatComponent.setPeriod(rxInfo.get("dosage").getAsJsonObject().get("period").getAsDouble());
            timingRepeatComponent.setPeriodUnit(convertUcumCode(rxInfo.get("dosage").getAsJsonObject().get("unit").getAsString()));
            timing.setRepeat(timingRepeatComponent);
            dosage.setTiming(timing);
            Quantity dose = new SimpleQuantity().setValue(rxInfo.get("dosage").getAsJsonObject().get("amount").getAsDouble());
            dosage.setDose(dose);
            if (rxInfo.has("instructions")) {
                for (JsonElement instructionElement : rxInfo.get("instructions").getAsJsonArray()) {
                    JsonObject instruction = instructionElement.getAsJsonObject();
                    Code instructionCode = new Code(SNOMED_URI, instruction.get("code").getAsString(), instruction.get("display").getAsString());
                    dosage.addAdditionalInstruction(mapCodeToCodeableConcept(instructionCode, SNOMED_URI));
                }
            }
        }
        List<Dosage> dosageInstruction = new ArrayList<Dosage>();
        dosageInstruction.add(dosage);
        medicationResource.setDosageInstruction(dosageInstruction);
    }
    if (USE_SHR_EXTENSIONS) {
        medicationResource.addExtension().setUrl(SHR_EXT + "shr-base-ActionCode-extension").setValue(PRESCRIPTION_OF_DRUG_CC);
        medicationResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-medication-MedicationRequested"));
        // required fields for this profile are status, action-RequestedContext-extension,
        // medication[x]subject, authoredOn, requester
        Extension requestedContext = new Extension();
        requestedContext.setUrl(SHR_EXT + "shr-action-RequestedContext-extension");
        requestedContext.addExtension(SHR_EXT + "shr-action-Status-extension", new CodeType("completed"));
        requestedContext.addExtension(SHR_EXT + "shr-action-RequestIntent-extension", new CodeType("original-order"));
        medicationResource.addExtension(requestedContext);
    }
    BundleEntryComponent medicationEntry = newEntry(rand, bundle, medicationResource);
    // create new claim for medication
    medicationClaim(rand, personEntry, bundle, encounterEntry, medication.claim, medicationEntry);
    // Create new administration for medication, if needed
    if (medication.administration) {
        medicationAdministration(rand, personEntry, bundle, encounterEntry, medication, medicationResource);
    }
    return medicationEntry;
}

Example 30 with COMPLETED

use of org.hl7.fhir.r4.model.Procedure.ProcedureStatus.COMPLETED in project synthea by synthetichealth.

the class FhirStu3 method procedure.

/**
 * Map the given Procedure into a FHIR Procedure resource, and add it to the given Bundle.
 *
 * @param rand Source of randomness to use when generating ids etc
 * @param personEntry The Person entry
 * @param bundle Bundle to add to
 * @param encounterEntry The current Encounter entry
 * @param procedure  The Procedure
 * @return The added Entry
 */
private static BundleEntryComponent procedure(RandomNumberGenerator rand, BundleEntryComponent personEntry, Bundle bundle, BundleEntryComponent encounterEntry, Procedure procedure) {
    org.hl7.fhir.dstu3.model.Procedure procedureResource = new org.hl7.fhir.dstu3.model.Procedure();
    procedureResource.setStatus(ProcedureStatus.COMPLETED);
    procedureResource.setSubject(new Reference(personEntry.getFullUrl()));
    procedureResource.setContext(new Reference(encounterEntry.getFullUrl()));
    Code code = procedure.codes.get(0);
    CodeableConcept procCode = mapCodeToCodeableConcept(code, SNOMED_URI);
    procedureResource.setCode(procCode);
    if (procedure.stop != 0L) {
        Date startDate = new Date(procedure.start);
        Date endDate = new Date(procedure.stop);
        procedureResource.setPerformed(new Period().setStart(startDate).setEnd(endDate));
    } else {
        procedureResource.setPerformed(convertFhirDateTime(procedure.start, true));
    }
    if (!procedure.reasons.isEmpty()) {
        // Only one element in list
        Code reason = procedure.reasons.get(0);
        for (BundleEntryComponent entry : bundle.getEntry()) {
            if (entry.getResource().fhirType().equals("Condition")) {
                Condition condition = (Condition) entry.getResource();
                // Only one element in list
                Coding coding = condition.getCode().getCoding().get(0);
                if (reason.code.equals(coding.getCode())) {
                    procedureResource.addReasonReference().setReference(entry.getFullUrl()).setDisplay(reason.display);
                }
            }
        }
    }
    if (USE_SHR_EXTENSIONS) {
        procedureResource.setMeta(new Meta().addProfile(SHR_EXT + "shr-procedure-ProcedurePerformed"));
        // required fields for this profile are action-PerformedContext-extension,
        // status, code, subject, performed[x]
        Extension performedContext = new Extension();
        performedContext.setUrl(SHR_EXT + "shr-action-PerformedContext-extension");
        performedContext.addExtension(SHR_EXT + "shr-action-Status-extension", new CodeType("completed"));
        procedureResource.addExtension(performedContext);
    }
    BundleEntryComponent procedureEntry = newEntry(rand, bundle, procedureResource);
    procedure.fullUrl = procedureEntry.getFullUrl();
    return procedureEntry;
}