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Example 16 with ValueSetComposeComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetComposeComponent in project gpconnect-demonstrator by nhsconnect.

the class ValueSetValidator method validateCode.

public Boolean validateCode(Coding code) {
    String systemUrl = code.getSystem();
    ValueSet valSet = loadValueSet(systemUrl);
    // Check Code System
    @SuppressWarnings("unused") ValueSetComposeComponent codeSys = valSet.getCompose();
    @SuppressWarnings("unused") List<ValueSet.ConceptReferenceComponent> concepts;
    return true;
}
Also used : ValueSet(org.hl7.fhir.dstu3.model.ValueSet) ValueSetComposeComponent(org.hl7.fhir.dstu3.model.ValueSet.ValueSetComposeComponent)

Example 17 with ValueSetComposeComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetComposeComponent in project bunsen by cerner.

the class ValueSets method expandValuesIterator.

private static Iterator<Value> expandValuesIterator(ValueSet valueSet) {
    List<Value> values = new ArrayList<>();
    ValueSetComposeComponent compose = valueSet.getCompose();
    for (ConceptSetComponent inclusion : compose.getInclude()) {
        for (ConceptReferenceComponent concept : inclusion.getConcept()) {
            Value value = new Value();
            value.setValueSetUri(valueSet.getUrl());
            value.setValueSetVersion(valueSet.getVersion());
            value.setSystem(inclusion.getSystem());
            value.setVersion(inclusion.getVersion());
            value.setValue(concept.getCode());
            values.add(value);
        }
    }
    return values.iterator();
}
Also used : ConceptSetComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptSetComponent) ArrayList(java.util.ArrayList) ValueSetComposeComponent(org.hl7.fhir.dstu3.model.ValueSet.ValueSetComposeComponent) ConceptReferenceComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptReferenceComponent)

Example 18 with ValueSetComposeComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetComposeComponent in project bunsen by cerner.

the class ValueSets method addToValueSet.

/**
 * Adds the given values to the given value set instance.
 */
private void addToValueSet(ValueSet valueSet, Dataset<Value> values) {
    ValueSetComposeComponent composeComponent = valueSet.getCompose();
    ConceptSetComponent currentInclusion = null;
    ConceptReferenceComponent concept = null;
    List<Value> sortedValues = values.sort("system", "version", "value").collectAsList();
    // Workaround for the decoder producing an immutable array by replacing it with a mutable one
    composeComponent.setInclude(new ArrayList<>(composeComponent.getInclude()));
    for (Value value : sortedValues) {
        if (currentInclusion == null || !value.getSystem().equals(currentInclusion.getSystem()) || !value.getVersion().equals(currentInclusion.getVersion())) {
            // Find a matching inclusion
            for (ConceptSetComponent candidate : composeComponent.getInclude()) {
                if (value.getSystem().equals(candidate.getSystem()) && value.getVersion().equals(candidate.getVersion())) {
                    currentInclusion = candidate;
                    // Workaround for the decoder producing an immutable array by replacing it with a
                    // mutable one
                    currentInclusion.setConcept(new ArrayList<>(currentInclusion.getConcept()));
                }
            }
            // No matching inclusion found, so add one
            if (currentInclusion == null) {
                currentInclusion = composeComponent.addInclude();
                currentInclusion.setSystem(value.getSystem());
                currentInclusion.setVersion(value.getVersion());
                concept = null;
            }
        }
        // Create concept if not exists
        if (concept == null || !value.getValue().equals(concept.getCode())) {
            concept = currentInclusion.addConcept();
            concept.setCode(value.getValue());
        }
    }
}
Also used : ConceptSetComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptSetComponent) ValueSetComposeComponent(org.hl7.fhir.dstu3.model.ValueSet.ValueSetComposeComponent) ConceptReferenceComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptReferenceComponent)

Example 19 with ValueSetComposeComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetComposeComponent in project bunsen by cerner.

the class ValueSets method addToValueSet.

@Override
protected void addToValueSet(ValueSet valueSet, Dataset<Value> values) {
    ValueSetComposeComponent composeComponent = valueSet.getCompose();
    ConceptSetComponent currentInclusion = null;
    ConceptReferenceComponent concept = null;
    List<Value> sortedValues = values.sort("system", "version", "value").collectAsList();
    // Workaround for the decoder producing an immutable array by replacing it with a mutable one
    composeComponent.setInclude(new ArrayList<>(composeComponent.getInclude()));
    for (Value value : sortedValues) {
        if (currentInclusion == null || !value.getSystem().equals(currentInclusion.getSystem()) || !value.getVersion().equals(currentInclusion.getVersion())) {
            // Find a matching inclusion
            for (ConceptSetComponent candidate : composeComponent.getInclude()) {
                if (value.getSystem().equals(candidate.getSystem()) && value.getVersion().equals(candidate.getVersion())) {
                    currentInclusion = candidate;
                    // Workaround for the decoder producing an immutable array by replacing it with a
                    // mutable one
                    currentInclusion.setConcept(new ArrayList<>(currentInclusion.getConcept()));
                }
            }
            // No matching inclusion found, so add one
            if (currentInclusion == null) {
                currentInclusion = composeComponent.addInclude();
                currentInclusion.setSystem(value.getSystem());
                currentInclusion.setVersion(value.getVersion());
                concept = null;
            }
        }
        // Create concept if not exists
        if (concept == null || !value.getValue().equals(concept.getCode())) {
            concept = currentInclusion.addConcept();
            concept.setCode(value.getValue());
        }
    }
}
Also used : ConceptSetComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptSetComponent) Value(com.cerner.bunsen.spark.codes.Value) ValueSetComposeComponent(org.hl7.fhir.dstu3.model.ValueSet.ValueSetComposeComponent) ConceptReferenceComponent(org.hl7.fhir.dstu3.model.ValueSet.ConceptReferenceComponent)

Example 20 with ValueSetComposeComponent

use of org.hl7.fhir.r4.model.ValueSet.ValueSetComposeComponent in project bunsen by cerner.

the class ValueSets method expandValuesIterator.

private static Iterator<Value> expandValuesIterator(ValueSet valueSet) {
    List<Value> values = new ArrayList<>();
    ValueSetComposeComponent compose = valueSet.getCompose();
    for (ConceptSetComponent inclusion : compose.getInclude()) {
        for (ConceptReferenceComponent concept : inclusion.getConcept()) {
            Value value = new Value();
            value.setValueSetUri(valueSet.getUrl());
            value.setValueSetVersion(valueSet.getVersion());
            value.setSystem(inclusion.getSystem());
            value.setVersion(inclusion.getVersion());
            value.setValue(concept.getCode());
            values.add(value);
        }
    }
    return values.iterator();
}
Also used : ConceptSetComponent(org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent) Value(com.cerner.bunsen.codes.Value) ArrayList(java.util.ArrayList) ValueSetComposeComponent(org.hl7.fhir.r4.model.ValueSet.ValueSetComposeComponent) ConceptReferenceComponent(org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent)

Aggregations

ConceptSetComponent (org.hl7.fhir.r4.model.ValueSet.ConceptSetComponent)9 ArrayList (java.util.ArrayList)8 ValueSetComposeComponent (org.hl7.fhir.r5.model.ValueSet.ValueSetComposeComponent)8 ValueSetComposeComponent (org.hl7.fhir.r4.model.ValueSet.ValueSetComposeComponent)7 ValueSetComposeComponent (org.hl7.fhir.dstu3.model.ValueSet.ValueSetComposeComponent)6 CodeSystem (org.hl7.fhir.r5.model.CodeSystem)6 CodeType (org.hl7.fhir.r5.model.CodeType)6 ConceptDefinitionComponent (org.hl7.fhir.r5.model.CodeSystem.ConceptDefinitionComponent)5 HashMap (java.util.HashMap)4 ConceptReferenceComponent (org.hl7.fhir.dstu3.model.ValueSet.ConceptReferenceComponent)4 ConceptSetComponent (org.hl7.fhir.dstu3.model.ValueSet.ConceptSetComponent)4 TerminologyServiceException (org.hl7.fhir.exceptions.TerminologyServiceException)4 ConceptReferenceComponent (org.hl7.fhir.r4.model.ValueSet.ConceptReferenceComponent)4 ConceptSetComponent (org.hl7.fhir.r5.model.ValueSet.ConceptSetComponent)4 FileNotFoundException (java.io.FileNotFoundException)3 IOException (java.io.IOException)3 DefinitionException (org.hl7.fhir.exceptions.DefinitionException)3 FHIRException (org.hl7.fhir.exceptions.FHIRException)3 NoTerminologyServiceException (org.hl7.fhir.exceptions.NoTerminologyServiceException)3 ConceptSetComponent (org.hl7.fhir.r4b.model.ValueSet.ConceptSetComponent)3