use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.DIAGNOSTICREPORT in project org.hl7.fhir.core by hapifhir.
the class ProfileUtilitiesTests method execute.
public void execute(String[] args) throws FileNotFoundException, IOException, FHIRException {
System.out.println("loading context");
context = SimpleWorkerContext.fromPack(Utilities.path(root, "validation.zip"));
comp = new ProfileComparer(context);
compare("patient-daf-dafpatient.profile.xml", "patient-qicore-qicore-patient.profile.xml");
compare("encounter-daf-dafencounter.profile.xml", "encounter-qicore-qicore-encounter.profile.xml");
compare("substance-daf-dafsubstance.profile.xml", "substance-qicore-qicore-substance.profile.xml");
compare("medication-daf-dafmedication.profile.xml", "medication-qicore-qicore-medication.profile.xml");
compare("procedure-daf-dafprocedure.profile.xml", "procedure-qicore-qicore-procedure.profile.xml");
compare("familymemberhistory-daf-daffamilymemberhistory.profile.xml", "familymemberhistory-qicore-qicore-familymemberhistory.profile.xml");
compare("immunization-daf-dafimmunization.profile.xml", "immunization-qicore-qicore-immunization.profile.xml");
compare("condition-daf-dafcondition.profile.xml", "condition-qicore-qicore-condition.profile.xml");
compare("allergyintolerance-daf-dafallergyintolerance.profile.xml", "allergyintolerance-qicore-qicore-allergyintolerance.profile.xml");
compare("medicationadministration-daf-dafmedicationadministration.profile.xml", "medicationadministration-qicore-qicore-medicationadministration.profile.xml");
compare("medicationdispense-daf-dafmedicationdispense.profile.xml", "medicationdispense-qicore-qicore-medicationdispense.profile.xml");
compare("medicationprescription-daf-dafmedicationprescription.profile.xml", "medicationprescription-qicore-qicore-medicationprescription.profile.xml");
compare("medicationstatement-daf-dafmedicationstatement.profile.xml", "medicationstatement-qicore-qicore-medicationstatement.profile.xml");
compare("observation-daf-smokingstatus-dafsmokingstatus.profile.xml", "observation-qicore-qicore-observation.profile.xml");
compare("observation-daf-vitalsigns-dafvitalsigns.profile.xml", "observation-qicore-qicore-observation.profile.xml");
// compare("observation-daf-results-dafresultobs.profile.xml", "observation-qicore-qicore-observation.profile.xml");
// compare("diagnosticorder-daf-dafdiagnosticorder.profile.xml", "diagnosticorder-qicore-qicore-diagnosticorder.profile.xml");
// compare("diagnosticreport-daf-dafdiagnosticreport.profile.xml", "diagnosticreport-qicore-qicore-diagnosticreport.profile.xml");
System.out.println("processing output");
for (ProfileComparison outcome : comp.getComparisons()) {
if (outcome.getSubset() != null)
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "intersection-" + outcome.getId() + ".xml")), outcome.getSubset());
if (outcome.getSuperset() != null)
new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path("[tmp]", "union-" + outcome.getId() + ".xml")), outcome.getSuperset());
System.out.println("\r\n" + outcome.getId() + ": Comparison of " + outcome.getLeft().getUrl() + " and " + outcome.getRight().getUrl());
for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.INFORMATION)
System.out.println(vm.summary());
for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.WARNING)
System.out.println(vm.summary());
for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.ERROR)
System.out.println(vm.summary());
for (ValidationMessage vm : outcome.getMessages()) if (vm.getLevel() == IssueSeverity.FATAL)
System.out.println(vm.summary());
System.out.println("done. " + Integer.toString(outcome.getMessages().size()) + " messages");
System.out.println("=================================================================");
}
}
use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.DIAGNOSTICREPORT in project org.hl7.fhir.core by hapifhir.
the class RdfParser method composeDiagnosticReportDiagnosticReportMediaComponent.
protected void composeDiagnosticReportDiagnosticReportMediaComponent(Complex parent, String parentType, String name, DiagnosticReport.DiagnosticReportMediaComponent element, int index) {
if (element == null)
return;
Complex t;
if (Utilities.noString(parentType))
t = parent;
else {
t = parent.predicate("fhir:" + parentType + '.' + name);
}
composeBackboneElement(t, "media", name, element, index);
if (element.hasCommentElement())
composeString(t, "DiagnosticReport", "comment", element.getCommentElement(), -1);
if (element.hasLink())
composeReference(t, "DiagnosticReport", "link", element.getLink(), -1);
}
use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.DIAGNOSTICREPORT in project org.hl7.fhir.core by hapifhir.
the class TurtleTests method test_diagnosticreport_example_ghp.
@Test
public void test_diagnosticreport_example_ghp() throws FileNotFoundException, IOException, Exception {
System.out.println("diagnosticreport-example-ghp.ttl");
new Turtle().parse(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\diagnosticreport-example-ghp.ttl"));
}
use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.DIAGNOSTICREPORT in project org.hl7.fhir.core by hapifhir.
the class TurtleTests method test_diagnosticreport_example_f202_bloodculture.
@Test
public void test_diagnosticreport_example_f202_bloodculture() throws FileNotFoundException, IOException, Exception {
System.out.println("diagnosticreport-example-f202-bloodculture.ttl");
new Turtle().parse(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\diagnosticreport-example-f202-bloodculture.ttl"));
}
use of org.hl7.fhir.r4.model.codesystems.ResourceTypes.DIAGNOSTICREPORT in project org.hl7.fhir.core by hapifhir.
the class TurtleTests method test_diagnosticreport_genetics_comprehensive_bone_marrow_report.
@Test
public void test_diagnosticreport_genetics_comprehensive_bone_marrow_report() throws FileNotFoundException, IOException, Exception {
System.out.println("diagnosticreport-genetics-comprehensive-bone-marrow-report.ttl");
new Turtle().parse(TextFile.fileToString("C:\\work\\org.hl7.fhir\\build\\publish\\diagnosticreport-genetics-comprehensive-bone-marrow-report.ttl"));
}
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