use of org.hl7.fhir.r4b.model.Attachment in project quality-measure-and-cohort-service by Alvearie.
the class CohortEngineRestHandler method getMeasureParameters.
@POST
@Path("/fhir/measure/identifier/{measure_identifier_value}/parameters")
@Produces(MediaType.APPLICATION_JSON)
@Consumes(MediaType.MULTIPART_FORM_DATA)
@ApiOperation(value = "Get measure parameters", notes = CohortEngineRestHandler.MEASURE_API_NOTES, response = MeasureParameterInfoList.class, authorizations = { @Authorization(value = "BasicAuth") }, responseContainer = "List", tags = { "FHIR Measures" })
@ApiImplicitParams({ @ApiImplicitParam(name = FHIR_DATA_SERVER_CONFIG_PART, value = CohortEngineRestHandler.EXAMPLE_DATA_SERVER_CONFIG_JSON, dataTypeClass = FhirServerConfig.class, required = true, paramType = "form", type = "file") })
@ApiResponses(value = { @ApiResponse(code = 200, message = "Successful Operation", response = MeasureParameterInfoList.class), @ApiResponse(code = 400, message = "Bad Request", response = ServiceErrorList.class), @ApiResponse(code = 500, message = "Server Error", response = ServiceErrorList.class) })
public Response getMeasureParameters(@ApiParam(value = ServiceBaseConstants.MINOR_VERSION_DESCRIPTION, required = true, defaultValue = ServiceBuildConstants.DATE) @QueryParam(CohortEngineRestHandler.VERSION) String version, @ApiParam(hidden = true, type = "file", required = true) IMultipartBody multipartBody, @ApiParam(value = CohortEngineRestHandler.MEASURE_IDENTIFIER_VALUE_DESC, required = true) @PathParam(CohortEngineRestHandler.MEASURE_IDENTIFIER_VALUE) String measureIdentifierValue, @ApiParam(value = CohortEngineRestHandler.MEASURE_IDENTIFIER_SYSTEM_DESC, required = false) @QueryParam(CohortEngineRestHandler.MEASURE_IDENTIFIER_SYSTEM) String measureIdentifierSystem, @ApiParam(value = CohortEngineRestHandler.MEASURE_VERSION_DESC, required = false) @QueryParam(CohortEngineRestHandler.MEASURE_VERSION) String measureVersion) {
final String methodName = MethodNames.GET_MEASURE_PARAMETERS.getName();
Response response = null;
try {
// Perform api setup
Response errorResponse = ServiceBaseUtility.apiSetup(version, logger, methodName);
if (errorResponse != null) {
return errorResponse;
}
IAttachment dataSourceAttachment = multipartBody.getAttachment(FHIR_DATA_SERVER_CONFIG_PART);
if (dataSourceAttachment == null) {
throw new IllegalArgumentException(String.format("Missing '%s' MIME attachment", FHIR_DATA_SERVER_CONFIG_PART));
}
// deserialize the MeasuresEvaluation request
ObjectMapper om = new ObjectMapper();
FhirServerConfig fhirServerConfig = om.readValue(dataSourceAttachment.getDataHandler().getInputStream(), FhirServerConfig.class);
// validate the contents of the fhirServerConfig
validateBean(fhirServerConfig);
// get the fhir client object used to call to FHIR
FhirClientBuilder clientBuilder = FhirClientBuilderFactory.newInstance().newFhirClientBuilder();
IGenericClient measureClient = clientBuilder.createFhirClient(fhirServerConfig);
// build the identifier object which is used by the fhir client
// to find the measure
Identifier identifier = new Identifier().setValue(measureIdentifierValue).setSystem(measureIdentifierSystem);
// resolve the measure, and return the parameter info for all the libraries linked to by the measure
FhirResourceResolver<Measure> measureResolver = R4FhirServerResourceResolverFactory.createMeasureResolver(measureClient);
List<MeasureParameterInfo> parameterInfoList = FHIRRestUtils.getParametersForMeasureIdentifier(measureResolver, identifier, measureVersion);
// return the results
MeasureParameterInfoList status = new MeasureParameterInfoList().measureParameterInfoList(parameterInfoList);
response = Response.ok(status).build();
} catch (Throwable e) {
// map any exceptions caught into the proper REST error response objects
return new CohortServiceExceptionMapper().toResponse(e);
} finally {
// Perform api cleanup
Response errorResponse = ServiceBaseUtility.apiCleanup(logger, methodName);
if (errorResponse != null) {
response = errorResponse;
}
}
return response;
}
use of org.hl7.fhir.r4b.model.Attachment in project quality-measure-and-cohort-service by Alvearie.
the class FhirTestBase method getLibrary.
protected Library getLibrary(String name, String version, String... attachmentData) throws Exception {
if (attachmentData == null || attachmentData.length == 0 || (attachmentData.length > 2) && ((attachmentData.length % 2) != 0)) {
fail("Invalid attachment data. Data must consist of one or more pairs of resource path and content-type strings");
}
List<String> pairs = new ArrayList<>(Arrays.asList(attachmentData));
if (pairs.size() == 1) {
pairs.add("text/cql");
}
List<Attachment> attachments = new ArrayList<>();
for (int i = 0; i < pairs.size(); i += 2) {
String resource = pairs.get(i);
String contentType = pairs.get(i + 1);
try (InputStream is = ClassLoader.getSystemResourceAsStream(resource)) {
assertNotNull(String.format("No such resource %s found in classpath", resource), is);
String text = IOUtils.toString(is, StandardCharsets.UTF_8);
Attachment attachment = new Attachment();
attachment.setContentType(contentType);
attachment.setData(text.getBytes());
attachments.add(attachment);
}
}
Library library = new Library();
library.setId("library-" + name + "-" + version);
library.setName(name);
library.setUrl(IBM_PREFIX + "/Library/" + name);
library.setVersion(version);
library.setContent(attachments);
return library;
}
use of org.hl7.fhir.r4b.model.Attachment in project quality-measure-and-cohort-service by Alvearie.
the class R4ParameterDefinitionWithDefaultToCohortParameterConverterTest method testAttachment__shouldThrowException.
@Test(expected = UnsupportedFhirTypeException.class)
public void testAttachment__shouldThrowException() {
ParameterDefinition parameterDefinition = getBaseParameterDefinition("Attachment");
Attachment fhirValue = new Attachment();
parameterDefinition.addExtension(CDMConstants.PARAMETER_DEFAULT_URL, fhirValue);
R4ParameterDefinitionWithDefaultToCohortParameterConverter.toCohortParameter(parameterDefinition);
}
use of org.hl7.fhir.r4b.model.Attachment in project quality-measure-and-cohort-service by Alvearie.
the class R4TranslatingLibraryLoaderTest method withContent.
private void withContent(Library library, String resourcePath, String contentType) throws IOException {
Attachment attachment = new Attachment();
attachment.setContentType(contentType);
attachment.setData(IOUtils.resourceToByteArray(resourcePath));
library.addContent(attachment);
}
use of org.hl7.fhir.r4b.model.Attachment in project summary-care-record-api by NHSDigital.
the class GetScrService method buildDocumentReferenceContent.
private DocumentReferenceContentComponent buildDocumentReferenceContent(String nhsNumber, String scrId) {
DocumentReferenceContentComponent content = new DocumentReferenceContentComponent();
String attachmentUrl = String.format(ATTACHMENT_URL, getScrUrl(), scrId, nhsNumber);
content.setAttachment(new Attachment().setUrl(attachmentUrl));
return content;
}
Aggregations