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Example 1 with ParameterDefinition

use of org.hl7.fhir.r4.model.ParameterDefinition in project kindling by HL7.

the class PageProcessor method pdHeader.

private String pdHeader(String mode) {
    StringBuilder b = new StringBuilder();
    b.append("<ul class=\"nav nav-tabs\">");
    b.append(makeHeaderTab("Parameter Definition", "parameterdefinition.html", mode == null || "base".equals(mode)));
    b.append(makeHeaderTab("Examples", "parameterdefinition-examples.html", mode == null || "examples".equals(mode)));
    b.append(makeHeaderTab("Detailed Descriptions", "parameterdefinition-definitions.html", mode == null || "definitions".equals(mode)));
    b.append(makeHeaderTab("Mappings", "parameterdefinition-mappings.html", mode == null || "mappings".equals(mode)));
    b.append("</ul>\r\n");
    return b.toString();
}
Also used : CommaSeparatedStringBuilder(org.hl7.fhir.utilities.CommaSeparatedStringBuilder)

Example 2 with ParameterDefinition

use of org.hl7.fhir.r4.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___FHIR_measure_parameters_on_measure_report.

@Test
public void measure_report_generated___FHIR_measure_parameters_on_measure_report() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    Map<String, Type> measureParameters = new HashMap<>();
    measureParameters.put("base64Param", new Base64BinaryType("AAA"));
    measureParameters.put("booleanParam", new BooleanType(false));
    measureParameters.put("dateParam", new DateType("2020-01-01"));
    measureParameters.put("dateTimeParam", new DateTimeType("2020-01-01T12:00:00"));
    measureParameters.put("decimalParam", new DecimalType(12.0));
    measureParameters.put("instantParam", new InstantType("2020-01-01T12:00:00-04:00"));
    measureParameters.put("integerParam", new IntegerType(1));
    measureParameters.put("stringParam", new StringType("str"));
    measureParameters.put("timeParam", new TimeType("05:30:00"));
    measureParameters.put("uriParam", new UriType("abcde"));
    measureParameters.put("codeableConceptParam", new CodeableConcept().setText("display").addCoding(new Coding().setCode("val").setSystem("sys").setDisplay("display")));
    measureParameters.put("codingParam", new Coding().setCode("v").setSystem("s").setDisplay("d"));
    measureParameters.put("periodParam", new Period().setStart(new Date(1)).setEnd(new Date(2)));
    measureParameters.put("quantityParam", new Quantity().setValue(1).setUnit("g"));
    measureParameters.put("rangeParam", new Range().setLow(new Quantity().setUnit("g").setValue(1)).setHigh(new Quantity().setUnit("g").setValue(5)));
    measureParameters.put("ratioParam", new Ratio().setNumerator(new Quantity().setUnit("g").setValue(1)).setDenominator(new Quantity().setUnit("g").setValue(5)));
    List<Extension> parameterExtensions = measureParameters.entrySet().stream().map(x -> createMeasureParameter(x.getKey(), x.getValue())).collect(Collectors.toList());
    measure.setExtension(parameterExtensions);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
    assertNotNull(report);
    List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
    // Expected parameters are the ones listed above, plus the special parameters
    // measurement period and product line
    assertEquals(measureParameters.size() + 2, parameterNames.size());
    assertTrue(parameterNames.containsAll(measureParameters.keySet()));
    assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
    assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}
Also used : Arrays(java.util.Arrays) Date(java.util.Date) PARAMETER_VALUE_URL(com.ibm.cohort.engine.cdm.CDMConstants.PARAMETER_VALUE_URL) Range(org.hl7.fhir.r4.model.Range) StringUtils(org.apache.commons.lang3.StringUtils) ConceptParameter(com.ibm.cohort.cql.evaluation.parameters.ConceptParameter) InvalidOperatorArgument(org.opencds.cqf.cql.engine.exception.InvalidOperatorArgument) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) HumanName(org.hl7.fhir.r4.model.HumanName) RatioParameter(com.ibm.cohort.cql.evaluation.parameters.RatioParameter) Map(java.util.Map) StringType(org.hl7.fhir.r4.model.StringType) Assert.fail(org.junit.Assert.fail) ParseException(java.text.ParseException) IntegerType(org.hl7.fhir.r4.model.IntegerType) Patient(org.hl7.fhir.r4.model.Patient) DefineReturnOptions(com.ibm.cohort.engine.measure.evidence.MeasureEvidenceOptions.DefineReturnOptions) IntegerParameter(com.ibm.cohort.cql.evaluation.parameters.IntegerParameter) DateParameter(com.ibm.cohort.cql.evaluation.parameters.DateParameter) DateType(org.hl7.fhir.r4.model.DateType) TimeZone(java.util.TimeZone) CodeParameter(com.ibm.cohort.cql.evaluation.parameters.CodeParameter) Period(org.hl7.fhir.r4.model.Period) MEASURE_PARAMETER_URL(com.ibm.cohort.engine.cdm.CDMConstants.MEASURE_PARAMETER_URL) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) Collectors(java.util.stream.Collectors) PARAMETER_DEFAULT_URL(com.ibm.cohort.engine.cdm.CDMConstants.PARAMETER_DEFAULT_URL) TimeType(org.hl7.fhir.r4.model.TimeType) List(java.util.List) BooleanType(org.hl7.fhir.r4.model.BooleanType) Assert.assertFalse(org.junit.Assert.assertFalse) Coding(org.hl7.fhir.r4.model.Coding) WireMock.getRequestedFor(com.github.tomakehurst.wiremock.client.WireMock.getRequestedFor) Extension(org.hl7.fhir.r4.model.Extension) UriType(org.hl7.fhir.r4.model.UriType) Parameter(com.ibm.cohort.cql.evaluation.parameters.Parameter) 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MeasurePopulationType(org.opencds.cqf.common.evaluation.MeasurePopulationType) InstantType(org.hl7.fhir.r4.model.InstantType) AdministrativeGender(org.hl7.fhir.r4.model.Enumerations.AdministrativeGender) BooleanParameter(com.ibm.cohort.cql.evaluation.parameters.BooleanParameter) MeasureReport(org.hl7.fhir.r4.model.MeasureReport) WireMock.urlEqualTo(com.github.tomakehurst.wiremock.client.WireMock.urlEqualTo) Assert.assertEquals(org.junit.Assert.assertEquals) HashMap(java.util.HashMap) StringType(org.hl7.fhir.r4.model.StringType) TimeType(org.hl7.fhir.r4.model.TimeType) DateTimeType(org.hl7.fhir.r4.model.DateTimeType) UriType(org.hl7.fhir.r4.model.UriType) Coding(org.hl7.fhir.r4.model.Coding) CapabilityStatement(org.hl7.fhir.r4.model.CapabilityStatement) Measure(org.hl7.fhir.r4.model.Measure) Ratio(org.hl7.fhir.r4.model.Ratio) InstantType(org.hl7.fhir.r4.model.InstantType) DateType(org.hl7.fhir.r4.model.DateType) BooleanType(org.hl7.fhir.r4.model.BooleanType) 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DecimalType(org.hl7.fhir.r4.model.DecimalType) Library(org.hl7.fhir.r4.model.Library) Base64BinaryType(org.hl7.fhir.r4.model.Base64BinaryType) CodeableConcept(org.hl7.fhir.r4.model.CodeableConcept) Test(org.junit.Test)

Example 3 with ParameterDefinition

use of org.hl7.fhir.r4.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class R4ParameterDefinitionWithDefaultToCohortParameterConverterTest method testUri__shouldReturnStringParameter.

@Test
public void testUri__shouldReturnStringParameter() {
    ParameterDefinition parameterDefinition = getBaseParameterDefinition("uri");
    String uriString = "a-b-c-d-e-f-g";
    UriType fhirValue = new UriType(uriString);
    parameterDefinition.addExtension(CDMConstants.PARAMETER_DEFAULT_URL, fhirValue);
    assertEquals(new StringParameter(uriString), R4ParameterDefinitionWithDefaultToCohortParameterConverter.toCohortParameter(parameterDefinition));
}
Also used : StringParameter(com.ibm.cohort.cql.evaluation.parameters.StringParameter) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) UriType(org.hl7.fhir.r4.model.UriType) Test(org.junit.Test)

Example 4 with ParameterDefinition

use of org.hl7.fhir.r4.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class R4ParameterDefinitionWithDefaultToCohortParameterConverterTest method testDecimal__shouldReturnDecimalParameter.

@Test
public void testDecimal__shouldReturnDecimalParameter() {
    ParameterDefinition parameterDefinition = getBaseParameterDefinition("decimal");
    String decimalString = "1.5";
    BigDecimal bigDecimalValue = new BigDecimal(decimalString);
    DecimalType fhirValue = new DecimalType(bigDecimalValue);
    parameterDefinition.addExtension(CDMConstants.PARAMETER_DEFAULT_URL, fhirValue);
    assertEquals(new DecimalParameter(decimalString), R4ParameterDefinitionWithDefaultToCohortParameterConverter.toCohortParameter(parameterDefinition));
}
Also used : DecimalParameter(com.ibm.cohort.cql.evaluation.parameters.DecimalParameter) DecimalType(org.hl7.fhir.r4.model.DecimalType) BigDecimal(java.math.BigDecimal) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) Test(org.junit.Test)

Example 5 with ParameterDefinition

use of org.hl7.fhir.r4.model.ParameterDefinition in project quality-measure-and-cohort-service by Alvearie.

the class R4ParameterDefinitionWithDefaultToCohortParameterConverterTest method testCoding__shouldReturnCodeParameter.

@Test
public void testCoding__shouldReturnCodeParameter() {
    ParameterDefinition parameterDefinition = getBaseParameterDefinition("Coding");
    Coding fhirValue = makeCoding("sys", "val", "dis", "ver");
    parameterDefinition.addExtension(CDMConstants.PARAMETER_DEFAULT_URL, fhirValue);
    CodeParameter expectedParameter = new CodeParameter().setSystem("sys").setValue("val").setDisplay("dis").setVersion("ver");
    assertEquals(expectedParameter, R4ParameterDefinitionWithDefaultToCohortParameterConverter.toCohortParameter(parameterDefinition));
}
Also used : Coding(org.hl7.fhir.r4.model.Coding) CodeParameter(com.ibm.cohort.cql.evaluation.parameters.CodeParameter) ParameterDefinition(org.hl7.fhir.r4.model.ParameterDefinition) Test(org.junit.Test)

Aggregations

ParameterDefinition (org.hl7.fhir.r4.model.ParameterDefinition)32 Test (org.junit.Test)26 Extension (org.hl7.fhir.r4.model.Extension)14 DatetimeParameter (com.ibm.cohort.cql.evaluation.parameters.DatetimeParameter)9 ArrayList (java.util.ArrayList)9 DateTimeType (org.hl7.fhir.r4.model.DateTimeType)9 QuantityParameter (com.ibm.cohort.cql.evaluation.parameters.QuantityParameter)8 StringParameter (com.ibm.cohort.cql.evaluation.parameters.StringParameter)8 Quantity (org.hl7.fhir.r4.model.Quantity)8 Range (org.hl7.fhir.r4.model.Range)8 CodeParameter (com.ibm.cohort.cql.evaluation.parameters.CodeParameter)7 IntervalParameter (com.ibm.cohort.cql.evaluation.parameters.IntervalParameter)7 Period (org.hl7.fhir.r4.model.Period)7 BooleanParameter (com.ibm.cohort.cql.evaluation.parameters.BooleanParameter)6 ConceptParameter (com.ibm.cohort.cql.evaluation.parameters.ConceptParameter)6 DateParameter (com.ibm.cohort.cql.evaluation.parameters.DateParameter)6 DecimalParameter (com.ibm.cohort.cql.evaluation.parameters.DecimalParameter)6 IntegerParameter (com.ibm.cohort.cql.evaluation.parameters.IntegerParameter)6 RatioParameter (com.ibm.cohort.cql.evaluation.parameters.RatioParameter)6 TimeParameter (com.ibm.cohort.cql.evaluation.parameters.TimeParameter)6