Examples with Ratio org.hl7.fhir.r4.model.Ratio used on opensource projects

Example 1 with Ratio

use of org.hl7.fhir.r4.model.Ratio in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dosageInstructionTestRateRatioRXE.

@Test
void dosageInstructionTestRateRatioRXE() {
    // Test dosageInstruction.RateRatio from RXE.22,23,24
    String hl7message = "MSH|^~\\&||||||S1|RDE^O11||T|2.6|||||||||\n" + "PID|||1234^^^^MR||DOE^JANE^|||F||||||||||||||||||||||\n" + "ORC|NW|||||E|||||||||||||||||||||||I\n" + "RXE||DUONEB3INH^3 ML PLAS CONT : IPRATROPIUM-ALBUTEROL 0.5-2.5 (3) MG/3ML IN SOLN^ADS|||||||||||||||||||" + // RXE.24.3 empty to cause default in dosageInstruction.doseAndRate.rateRatio.numerator.system
    "|PC|7|PC||||||||||||||||\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    Ratio rateRatio = medicationRequest.getDosageInstructionFirstRep().getDoseAndRateFirstRep().getRateRatio();
    // dosageInstruction.doseAndRate.rateRatio.numerator(RXE.23)
    // RXE.23
    assertThat(rateRatio.getNumerator().getValue()).hasToString("7.0");
    // RXE.24
    assertThat(rateRatio.getNumerator().getUnit()).isEqualTo("PC");
    // Defaulted
    assertThat(rateRatio.getNumerator().getSystem()).isEqualTo("http://unitsofmeasure.org");
    // dosageInstruction.doseAndRate.rateRatio.denominator
    assertThat(rateRatio.getDenominator().getValue()).hasToString("1.0");
    // RXE.22
    assertThat(rateRatio.getDenominator().getUnit()).isEqualTo("PC");
    assertThat(rateRatio.getDenominator().getSystem()).isEqualTo("http://unitsofmeasure.org");
    // Verify no extraneous resources
    // Expect MedicationRequest, Patient
    assertThat(e).hasSize(2);
}

Example 2 with Ratio

use of org.hl7.fhir.r4.model.Ratio in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7MedicationRequestFHIRConversionTest method dosageInstructionTestMaxDosePerPeriodRXO.

@Test
void dosageInstructionTestMaxDosePerPeriodRXO() {
    // Test dosageInstruction.maxDosePerPeriod from RXO.23
    String hl7message = "MSH|^~\\\\&|||||20210101000000||OMP^O09|MSGID|T|2.6\n" + "PID|||1234||DOE^JANE^|||F||||||||||||||||||||||\n" + "PV1||I||||||||||||||||||||||||||||||||||||||||||\n" + "ORC|OP||||||||||||||||||||||\n" + "RXO|00054418425^Dexamethasone 4 MG Oral Tablet^NDC|||||" + // RXO.8 through RXO.22 optional
    "||||||||||||||||" + // RXO.23 to dosageInstruction.maxDosePerPeriod.numerator
    "|7^PC|\n";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> medicationRequestList = ResourceUtils.getResourceList(e, ResourceType.MedicationRequest);
    // Confirm that one medicationRequest was created.
    assertThat(medicationRequestList).hasSize(1);
    MedicationRequest medicationRequest = ResourceUtils.getResourceMedicationRequest(medicationRequestList.get(0), ResourceUtils.context);
    Ratio maxDose = medicationRequest.getDosageInstructionFirstRep().getMaxDosePerPeriod();
    // dosageInstruction.maxDosePerPeriod.numerator(RXO.23)
    assertThat(maxDose.getNumerator().getValue()).hasToString("7.0");
    assertThat(maxDose.getNumerator().getUnit()).isEqualTo("PC");
    assertThat(maxDose.getNumerator().getSystem()).isEqualTo("http://unitsofmeasure.org");
    // dosageInstruction.maxDosePerPeriod.denominator
    assertThat(maxDose.getDenominator().getValue()).hasToString("1.0");
    assertThat(maxDose.getDenominator().getUnit()).isEqualTo("day");
    assertThat(maxDose.getDenominator().getSystem()).isEqualTo("http://unitsofmeasure.org");
    // Verify no extraneous resources
    // Expect MedicationRequest, Patient, and Encounter
    assertThat(e).hasSize(3);
}

Example 3 with Ratio

use of org.hl7.fhir.r4.model.Ratio in project hl7v2-fhir-converter by LinuxForHealth.

the class Hl7ObservationFHIRConversionTest method testObservationSN_valueRatio_slash_result.

@Test
void testObservationSN_valueRatio_slash_result() throws IOException {
    String hl7message = baseMessage + "OBX|1|SN|111^LabWithRatio||^2^/^3|";
    List<BundleEntryComponent> e = ResourceUtils.createFHIRBundleFromHL7MessageReturnEntryList(ftv, hl7message);
    List<Resource> obsResource = ResourceUtils.getResourceList(e, ResourceType.Observation);
    assertThat(obsResource).hasSize(1);
    Observation obs = (Observation) obsResource.get(0);
    assertTrue(obs.hasValueRatio());
    Ratio r = obs.getValueRatio();
    assertEquals(2f, r.getNumerator().getValue().floatValue());
    assertEquals(3f, r.getDenominator().getValue().floatValue());
}

Example 4 with Ratio

use of org.hl7.fhir.r4.model.Ratio in project quality-measure-and-cohort-service by Alvearie.

the class CQLToFHIRMeasureReportHelperTest method testRatio.

@Test
public void testRatio() {
    String unit = "ml";
    BigDecimal amount1 = new BigDecimal("4.0");
    Quantity quantity1 = new Quantity().withUnit(unit).withValue(amount1);
    BigDecimal amount2 = new BigDecimal("7.0");
    Quantity quantity2 = new Quantity().withUnit(unit).withValue(amount2);
    Ratio ratio = new Ratio().setNumerator(quantity1).setDenominator(quantity2);
    IBaseDatatype fhirTypeValue = CQLToFHIRMeasureReportHelper.getFhirTypeValue(ratio);
    assertTrue(fhirTypeValue instanceof org.hl7.fhir.r4.model.Ratio);
    org.hl7.fhir.r4.model.Ratio castResult = (org.hl7.fhir.r4.model.Ratio) fhirTypeValue;
    verifyBaseTypeAsQuantity(castResult.getNumerator(), amount1, unit);
    verifyBaseTypeAsQuantity(castResult.getDenominator(), amount2, unit);
}

Example 5 with Ratio

use of org.hl7.fhir.r4.model.Ratio in project quality-measure-and-cohort-service by Alvearie.

the class MeasureEvaluatorTest method measure_report_generated___FHIR_measure_parameters_on_measure_report.

@Test
public void measure_report_generated___FHIR_measure_parameters_on_measure_report() throws Exception {
    CapabilityStatement metadata = getCapabilityStatement();
    mockFhirResourceRetrieval("/metadata?_format=json", metadata);
    Patient patient = getPatient("123", AdministrativeGender.MALE, "1970-10-10");
    mockFhirResourceRetrieval(patient);
    Library library = mockLibraryRetrieval("TestDummyPopulations", DEFAULT_VERSION, "cql/fhir-measure/test-dummy-populations.xml", ELM_MIME_TYPE);
    Measure measure = getCohortMeasure("CohortMeasureName", library, INITIAL_POPULATION);
    Map<String, Type> measureParameters = new HashMap<>();
    measureParameters.put("base64Param", new Base64BinaryType("AAA"));
    measureParameters.put("booleanParam", new BooleanType(false));
    measureParameters.put("dateParam", new DateType("2020-01-01"));
    measureParameters.put("dateTimeParam", new DateTimeType("2020-01-01T12:00:00"));
    measureParameters.put("decimalParam", new DecimalType(12.0));
    measureParameters.put("instantParam", new InstantType("2020-01-01T12:00:00-04:00"));
    measureParameters.put("integerParam", new IntegerType(1));
    measureParameters.put("stringParam", new StringType("str"));
    measureParameters.put("timeParam", new TimeType("05:30:00"));
    measureParameters.put("uriParam", new UriType("abcde"));
    measureParameters.put("codeableConceptParam", new CodeableConcept().setText("display").addCoding(new Coding().setCode("val").setSystem("sys").setDisplay("display")));
    measureParameters.put("codingParam", new Coding().setCode("v").setSystem("s").setDisplay("d"));
    measureParameters.put("periodParam", new Period().setStart(new Date(1)).setEnd(new Date(2)));
    measureParameters.put("quantityParam", new Quantity().setValue(1).setUnit("g"));
    measureParameters.put("rangeParam", new Range().setLow(new Quantity().setUnit("g").setValue(1)).setHigh(new Quantity().setUnit("g").setValue(5)));
    measureParameters.put("ratioParam", new Ratio().setNumerator(new Quantity().setUnit("g").setValue(1)).setDenominator(new Quantity().setUnit("g").setValue(5)));
    List<Extension> parameterExtensions = measureParameters.entrySet().stream().map(x -> createMeasureParameter(x.getKey(), x.getValue())).collect(Collectors.toList());
    measure.setExtension(parameterExtensions);
    mockFhirResourceRetrieval(measure);
    MeasureReport report = evaluator.evaluatePatientMeasure(measure.getId(), patient.getId(), null);
    assertNotNull(report);
    List<String> parameterNames = report.getExtension().stream().filter(x -> x.getUrl().equals(MEASURE_PARAMETER_VALUE_URL)).map(x -> (ParameterDefinition) x.getValue()).map(ParameterDefinition::getName).collect(Collectors.toList());
    // Expected parameters are the ones listed above, plus the special parameters
    // measurement period and product line
    assertEquals(measureParameters.size() + 2, parameterNames.size());
    assertTrue(parameterNames.containsAll(measureParameters.keySet()));
    assertTrue(parameterNames.contains(CDMConstants.MEASUREMENT_PERIOD));
    assertTrue(parameterNames.contains(CDMConstants.PRODUCT_LINE));
}