use of org.hl7.fhir.r4b.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSetCheckerSimple method codeInConceptIsAFilter.
private boolean codeInConceptIsAFilter(CodeSystem cs, ConceptSetFilterComponent f, String code) {
if (code.equals(f.getProperty()))
return true;
ConceptDefinitionComponent cc = findCodeInConcept(cs.getConcept(), f.getValue());
if (cc == null)
return false;
cc = findCodeInConcept(cc.getConcept(), code);
return cc != null;
}
use of org.hl7.fhir.r4b.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class TerminologyCache method load.
private void load() throws FHIRException {
for (String fn : new File(folder).list()) {
if (fn.endsWith(".cache") && !fn.equals("validation.cache")) {
int c = 0;
try {
String title = fn.substring(0, fn.lastIndexOf("."));
NamedCache nc = new NamedCache();
nc.name = title;
caches.put(title, nc);
String src = TextFile.fileToString(Utilities.path(folder, fn));
if (src.startsWith("?"))
src = src.substring(1);
int i = src.indexOf(ENTRY_MARKER);
while (i > -1) {
c++;
String s = src.substring(0, i);
src = src.substring(i + ENTRY_MARKER.length() + 1);
i = src.indexOf(ENTRY_MARKER);
if (!Utilities.noString(s)) {
int j = s.indexOf(BREAK);
String q = s.substring(0, j);
String p = s.substring(j + BREAK.length() + 1).trim();
CacheEntry ce = new CacheEntry();
ce.persistent = true;
ce.request = q;
boolean e = p.charAt(0) == 'e';
p = p.substring(3);
JsonObject o = (JsonObject) new com.google.gson.JsonParser().parse(p);
String error = loadJS(o.get("error"));
if (e) {
if (o.has("valueSet"))
ce.e = new ValueSetExpansionOutcome((ValueSet) new JsonParser().parse(o.getAsJsonObject("valueSet")), error, TerminologyServiceErrorClass.UNKNOWN);
else
ce.e = new ValueSetExpansionOutcome(error, TerminologyServiceErrorClass.UNKNOWN);
} else {
String t = loadJS(o.get("severity"));
IssueSeverity severity = t == null ? null : IssueSeverity.fromCode(t);
String display = loadJS(o.get("display"));
String code = loadJS(o.get("code"));
String system = loadJS(o.get("system"));
String definition = loadJS(o.get("definition"));
t = loadJS(o.get("class"));
TerminologyServiceErrorClass errorClass = t == null ? null : TerminologyServiceErrorClass.valueOf(t);
ce.v = new ValidationResult(severity, error, system, new ConceptDefinitionComponent().setDisplay(display).setDefinition(definition).setCode(code)).setErrorClass(errorClass);
}
nc.map.put(String.valueOf(hashNWS(ce.request)), ce);
nc.list.add(ce);
}
}
} catch (Exception e) {
throw new FHIRException("Error loading " + fn + ": " + e.getMessage() + " entry " + c, e);
}
}
}
}
use of org.hl7.fhir.r4b.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class BaseWorkerContext method processValidationResult.
public ValidationResult processValidationResult(Parameters pOut) {
boolean ok = false;
String message = "No Message returned";
String display = null;
String system = null;
String code = null;
TerminologyServiceErrorClass err = TerminologyServiceErrorClass.UNKNOWN;
for (ParametersParameterComponent p : pOut.getParameter()) {
if (p.hasValue()) {
if (p.getName().equals("result")) {
ok = ((BooleanType) p.getValue()).getValue().booleanValue();
} else if (p.getName().equals("message")) {
message = ((StringType) p.getValue()).getValue();
} else if (p.getName().equals("display")) {
display = ((StringType) p.getValue()).getValue();
} else if (p.getName().equals("system")) {
system = ((StringType) p.getValue()).getValue();
} else if (p.getName().equals("code")) {
code = ((StringType) p.getValue()).getValue();
} else if (p.getName().equals("cause")) {
try {
IssueType it = IssueType.fromCode(((StringType) p.getValue()).getValue());
if (it == IssueType.UNKNOWN) {
err = TerminologyServiceErrorClass.UNKNOWN;
} else if (it == IssueType.NOTFOUND) {
err = TerminologyServiceErrorClass.CODESYSTEM_UNSUPPORTED;
} else if (it == IssueType.NOTSUPPORTED) {
err = TerminologyServiceErrorClass.VALUESET_UNSUPPORTED;
} else {
err = null;
}
} catch (FHIRException e) {
}
}
}
}
if (!ok) {
return new ValidationResult(IssueSeverity.ERROR, message + " (from " + txClient.getAddress() + ")", err).setTxLink(txLog.getLastId());
} else if (message != null && !message.equals("No Message returned")) {
return new ValidationResult(IssueSeverity.WARNING, message + " (from " + txClient.getAddress() + ")", system, new ConceptDefinitionComponent().setDisplay(display).setCode(code)).setTxLink(txLog.getLastId());
} else if (display != null) {
return new ValidationResult(system, new ConceptDefinitionComponent().setDisplay(display).setCode(code)).setTxLink(txLog.getLastId());
} else {
return new ValidationResult(system, new ConceptDefinitionComponent().setCode(code)).setTxLink(txLog.getLastId());
}
}
use of org.hl7.fhir.r4b.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class TerminologyCache method getCacheEntry.
private CacheEntry getCacheEntry(String request, String resultString) throws IOException {
CacheEntry ce = new CacheEntry();
ce.persistent = true;
ce.request = request;
boolean e = resultString.charAt(0) == 'e';
resultString = resultString.substring(3);
JsonObject o = (JsonObject) new com.google.gson.JsonParser().parse(resultString);
String error = loadJS(o.get("error"));
if (e) {
if (o.has("valueSet"))
ce.e = new ValueSetExpansionOutcome((ValueSet) new JsonParser().parse(o.getAsJsonObject("valueSet")), error, TerminologyServiceErrorClass.UNKNOWN);
else
ce.e = new ValueSetExpansionOutcome(error, TerminologyServiceErrorClass.UNKNOWN);
} else {
String t = loadJS(o.get("severity"));
IssueSeverity severity = t == null ? null : IssueSeverity.fromCode(t);
String display = loadJS(o.get("display"));
String code = loadJS(o.get("code"));
String system = loadJS(o.get("system"));
String definition = loadJS(o.get("definition"));
t = loadJS(o.get("class"));
TerminologyServiceErrorClass errorClass = t == null ? null : TerminologyServiceErrorClass.valueOf(t);
ce.v = new ValidationResult(severity, error, system, new ConceptDefinitionComponent().setDisplay(display).setDefinition(definition).setCode(code)).setErrorClass(errorClass);
}
return ce;
}
use of org.hl7.fhir.r4b.model.CodeSystem.ConceptDefinitionComponent in project org.hl7.fhir.core by hapifhir.
the class ValueSetCheckerSimple method codeInConceptIsAFilter.
private boolean codeInConceptIsAFilter(CodeSystem cs, ConceptSetFilterComponent f, String code, boolean rootOnly) {
if (!rootOnly && code.equals(f.getProperty())) {
return true;
}
ConceptDefinitionComponent cc = findCodeInConcept(cs.getConcept(), f.getValue());
if (cc == null) {
return false;
}
cc = findCodeInConcept(cc, code);
return cc != null;
}
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