Examples with ContactDetail org.hl7.fhir.r4b.model.ContactDetail used on opensource projects

Example 11 with ContactDetail

use of org.hl7.fhir.r4b.model.ContactDetail in project org.hl7.fhir.core by hapifhir.

the class IEEE11073Convertor method generateLoincMdcMap.

private static ConceptMap generateLoincMdcMap(CodeSystem mdc, String dst, String src) throws IOException, FHIRException {
    ConceptMap cm = new ConceptMap();
    cm.setId("loinc-mdc");
    cm.setUrl("http:/???/fhir/ConceptMap/loinc-mdc");
    cm.setVersion("[todo]");
    cm.setName("LoincMdcCrossMap");
    cm.setTitle("Cross Map between LOINC and MDC");
    cm.setStatus(PublicationStatus.DRAFT);
    cm.setExperimental(true);
    cm.setDateElement(new DateTimeType());
    cm.setPublisher("HL7, Inc");
    ContactDetail cd = cm.addContact();
    cd.setName("LOINC + IEEE");
    ContactPoint cp = cd.addTelecom();
    cp.setSystem(ContactPointSystem.URL);
    cp.setValue("http://loinc.org");
    cm.setDescription("A Cross Map between the LOINC and MDC Code systems");
    cm.setPurpose("To implementers map between medical device codes and LOINC codes");
    cm.setCopyright("This content LOINC \u00ae is copyright \u00a9 1995 Regenstrief Institute, Inc. and the LOINC Committee, and available at no cost under the license at http://loinc.org/terms-of-use");
    cm.setSource(new UriType("http://loinc.org/vs"));
    cm.setTarget(new UriType(MDC_ALL_VALUES));
    ConceptMapGroupComponent g = cm.addGroup();
    g.setSource("urn:iso:std:iso:11073:10101");
    g.setTarget("http://loinc.org");
    CSVReader csv = new CSVReader(new FileInputStream(src));
    csv.readHeaders();
    while (csv.line()) {
        SourceElementComponent e = g.addElement();
        e.setCode(csv.cell("IEEE_CF_CODE10"));
        e.setDisplay(csv.cell("IEEE_DESCRIPTION"));
        TargetElementComponent t = e.addTarget();
        t.setEquivalence(ConceptMapEquivalence.EQUIVALENT);
        t.setCode(csv.cell("LOINC_NUM"));
        t.setDisplay(csv.cell("LOINC_LONG_COMMON_NAME"));
    }
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dst, "conceptmap-" + cm.getId() + ".xml")), cm);
    System.out.println("Done");
    return cm;
}

Example 12 with ContactDetail

use of org.hl7.fhir.r4b.model.ContactDetail in project org.hl7.fhir.core by hapifhir.

the class IEEE11073Convertor method generateMDC.

public static CodeSystem generateMDC(String src, String dst, UcumService ucum) throws IOException, FHIRException {
    CSVReader csv = new CSVReader(new FileInputStream(src));
    csv.readHeaders();
    CodeSystem cs = new CodeSystem();
    Map<String, String> ucumIssues = new HashMap<String, String>();
    int errorCount = 0;
    cs.setId("MDC");
    cs.setUrl("urn:iso:std:iso:11073:10101");
    cs.setVersion("[todo]");
    cs.setName("11073:10101 codes for the FHIR community");
    cs.setStatus(PublicationStatus.ACTIVE);
    cs.setExperimental(false);
    cs.setDateElement(new DateTimeType());
    cs.setPublisher("HL7 (FHIR Project)");
    ContactDetail cd = cs.addContact();
    ContactPoint cp = cd.addTelecom();
    cp.setSystem(ContactPointSystem.URL);
    cp.setValue("http://ieee?");
    cs.setDescription("1073 Codes for the FHIR community (generated from the Rosetta data");
    Identifier i = new Identifier();
    cs.setIdentifier(i);
    i.setSystem("urn:ietf:rfc:3986");
    i.setValue("urn:oid:2.16.840.1.113883.6.24");
    cs.setCaseSensitive(false);
    cs.setContent(CodeSystemContentMode.COMPLETE);
    cs.addProperty().setCode("ucum").setDescription("UCUM units associated with Concept").setType(PropertyType.STRING);
    cs.addProperty().setCode("unit").setDescription("MDC units associated with Concept").setType(PropertyType.STRING);
    cs.addProperty().setCode("refid").setDescription("MDC Reference Id for Concept").setType(PropertyType.CODE);
    Set<String> codes = new HashSet<String>();
    while (csv.line()) {
        if (csv.has("CF_CODE10")) {
            String code = csv.cell("CF_CODE10");
            if (codes.contains(code))
                System.out.println("Duplicate Code " + code);
            else {
                codes.add(code);
                ConceptDefinitionComponent c = cs.addConcept();
                c.setCode(code);
                c.setDisplay(csv.cell("Common Term"));
                c.setDefinition(csv.cell("Term Description"));
                String vd = csv.cell("Vendor_Description");
                if (!c.hasDefinition())
                    c.setDefinition(vd);
                if (!c.hasDisplay())
                    c.setDisplay(vd);
                String refid = csv.cell("REFID");
                c.addProperty().setCode("refid").setValue(new CodeType().setValue(refid));
                if (csv.has("Synonym"))
                    c.addDesignation().setValue(csv.cell("Synonym")).setUse(new Coding().setSystem("http://hl7.org/fhir/designation-use").setCode("synonym"));
                if (csv.has("Acronym"))
                    c.addDesignation().setValue(csv.cell("Acronym")).setUse(new Coding().setSystem("http://hl7.org/fhir/designation-use").setDisplay("acronym"));
                if (csv.has("Systematic Name")) {
                    String sysName = csv.cell("Systematic Name");
                    if (!c.hasDefinition())
                        c.setDefinition(sysName);
                    c.addDesignation().setValue(sysName).setUse(new Coding().setSystem("http://hl7.org/fhir/designation-use").setCode("structured-name"));
                }
                if (csv.has("UOM_MDC"))
                    c.addProperty().setCode("unit").setValue(new StringType().setValue(csv.cell("UOM_MDC")));
                if (csv.has("UOM_UCUM")) {
                    CommaSeparatedStringBuilder ul = new CommaSeparatedStringBuilder();
                    for (String u : csv.cell("UOM_UCUM").split(" ")) {
                        String msg = ucum.validate(u);
                        if (msg != null) {
                            errorCount++;
                            ucumIssues.put(u, msg);
                        } else
                            ul.append(u);
                    }
                    if (ul.length() > 0)
                        c.addProperty().setCode("ucum").setValue(new StringType().setValue(ul.toString()));
                }
            }
        }
    }
    csv.close();
    new XmlParser().setOutputStyle(OutputStyle.PRETTY).compose(new FileOutputStream(Utilities.path(dst, "codesystem-" + cs.getId() + ".xml")), cs);
    System.out.println(errorCount + "UCUM errors");
    for (String u : sorted(ucumIssues.keySet())) System.out.println("Invalid UCUM code: " + u + " because " + ucumIssues.get(u));
    return cs;
}

Example 13 with ContactDetail

use of org.hl7.fhir.r4b.model.ContactDetail in project org.hl7.fhir.core by hapifhir.

the class RdfParser method composeContactDetail.

protected void composeContactDetail(Complex parent, String parentType, String name, ContactDetail element, int index) {
    if (element == null)
        return;
    Complex t;
    if (Utilities.noString(parentType))
        t = parent;
    else {
        t = parent.predicate("fhir:" + parentType + '.' + name);
    }
    composeElement(t, "ContactDetail", name, element, index);
    if (element.hasNameElement())
        composeString(t, "ContactDetail", "name", element.getNameElement(), -1);
    for (int i = 0; i < element.getTelecom().size(); i++) composeContactPoint(t, "ContactDetail", "telecom", element.getTelecom().get(i), i);
}

Example 14 with ContactDetail

use of org.hl7.fhir.r4b.model.ContactDetail in project org.hl7.fhir.core by hapifhir.

the class Questionnaire10_30 method convertQuestionnaire.

public static org.hl7.fhir.dstu2.model.Questionnaire convertQuestionnaire(org.hl7.fhir.dstu3.model.Questionnaire src) throws FHIRException {
    if (src == null || src.isEmpty())
        return null;
    org.hl7.fhir.dstu2.model.Questionnaire tgt = new org.hl7.fhir.dstu2.model.Questionnaire();
    ConversionContext10_30.INSTANCE.getVersionConvertor_10_30().copyDomainResource(src, tgt);
    for (org.hl7.fhir.dstu3.model.Identifier t : src.getIdentifier()) tgt.addIdentifier(Identifier10_30.convertIdentifier(t));
    if (src.hasVersionElement())
        tgt.setVersionElement(String10_30.convertString(src.getVersionElement()));
    if (src.hasStatus())
        tgt.setStatusElement(convertQuestionnaireStatus(src.getStatusElement()));
    if (src.hasDate())
        tgt.setDateElement(DateTime10_30.convertDateTime(src.getDateElement()));
    if (src.hasPublisherElement())
        tgt.setPublisherElement(String10_30.convertString(src.getPublisherElement()));
    for (ContactDetail t : src.getContact()) for (org.hl7.fhir.dstu3.model.ContactPoint t1 : t.getTelecom()) tgt.addTelecom(ContactPoint10_30.convertContactPoint(t1));
    org.hl7.fhir.dstu2.model.Questionnaire.GroupComponent root = tgt.getGroup();
    root.setTitle(src.getTitle());
    for (org.hl7.fhir.dstu3.model.Coding t : src.getCode()) {
        root.addConcept(Coding10_30.convertCoding(t));
    }
    for (org.hl7.fhir.dstu3.model.CodeType t : src.getSubjectType()) tgt.addSubjectType(t.getValue());
    for (org.hl7.fhir.dstu3.model.Questionnaire.QuestionnaireItemComponent t : src.getItem()) if (t.getType() == org.hl7.fhir.dstu3.model.Questionnaire.QuestionnaireItemType.GROUP)
        root.addGroup(convertQuestionnaireGroupComponent(t));
    else
        root.addQuestion(convertQuestionnaireQuestionComponent(t));
    return tgt;
}

Example 15 with ContactDetail

use of org.hl7.fhir.r4b.model.ContactDetail in project org.hl7.fhir.core by hapifhir.

the class Questionnaire14_40 method convertQuestionnaire.

public static org.hl7.fhir.dstu2016may.model.Questionnaire convertQuestionnaire(org.hl7.fhir.r4.model.Questionnaire src) throws FHIRException {
    if (src == null || src.isEmpty())
        return null;
    org.hl7.fhir.dstu2016may.model.Questionnaire tgt = new org.hl7.fhir.dstu2016may.model.Questionnaire();
    ConversionContext14_40.INSTANCE.getVersionConvertor_14_40().copyDomainResource(src, tgt);
    if (src.hasUrl())
        tgt.setUrlElement(Uri14_40.convertUri(src.getUrlElement()));
    for (org.hl7.fhir.r4.model.Identifier t : src.getIdentifier()) tgt.addIdentifier(Identifier14_40.convertIdentifier(t));
    if (src.hasVersion())
        tgt.setVersionElement(String14_40.convertString(src.getVersionElement()));
    if (src.hasStatus())
        tgt.setStatusElement(convertQuestionnaireStatus(src.getStatusElement()));
    if (src.hasDate())
        tgt.setDateElement(DateTime14_40.convertDateTime(src.getDateElement()));
    if (src.hasPublisher())
        tgt.setPublisherElement(String14_40.convertString(src.getPublisherElement()));
    for (ContactDetail t : src.getContact()) for (org.hl7.fhir.r4.model.ContactPoint t1 : t.getTelecom()) tgt.addTelecom(ContactPoint14_40.convertContactPoint(t1));
    for (UsageContext t : src.getUseContext()) tgt.addUseContext(CodeableConcept14_40.convertCodeableConcept(t.getValueCodeableConcept()));
    for (org.hl7.fhir.r4.model.CodeableConcept t : src.getJurisdiction()) tgt.addUseContext(CodeableConcept14_40.convertCodeableConcept(t));
    if (src.hasTitle())
        tgt.setTitleElement(String14_40.convertString(src.getTitleElement()));
    for (org.hl7.fhir.r4.model.Coding t : src.getCode()) tgt.addConcept(Coding14_40.convertCoding(t));
    for (org.hl7.fhir.r4.model.CodeType t : src.getSubjectType()) tgt.addSubjectType(t.getValue());
    for (org.hl7.fhir.r4.model.Questionnaire.QuestionnaireItemComponent t : src.getItem()) tgt.addItem(convertQuestionnaireItemComponent(t));
    return tgt;
}