Examples with Reference org.hl7.fhir.r4b.model.Reference used on opensource projects

Example 51 with Reference

use of org.hl7.fhir.r4b.model.Reference in project kindling by HL7.

the class TurtleSpecGenerator method renderType.

private int renderType(int indent, int w, TypeRef t) throws IOException {
    if (t.isXhtml())
        write("fhir:value \"[escaped xhtml]\"^^xsd:string");
    else if (t.getName().startsWith("@"))
        write("<a href=\"#ttl-" + t.getName().substring(1) + "\"><span style=\"color: DarkViolet\">See " + t.getName().substring(1) + "</span></a>");
    else if (definitions.getConstraints().containsKey(t.getName())) {
        ProfiledType pt = definitions.getConstraints().get(t.getName());
        write("<a href=\"" + (dtRoot + definitions.getSrcFile(pt.getBaseType()) + ".html#" + pt.getBaseType() + "\">" + pt.getBaseType()) + "</a>");
        w = w + pt.getBaseType().length() + 2;
        write("(<a style=\"color:navy\" href=\"" + (dtRoot + definitions.getSrcFile(t.getName()) + ".html#" + t.getName() + "\">" + t.getName()) + "</a>)");
    } else
        write("<a href=\"" + (dtRoot + definitions.getSrcFile(t.getName()) + ".html#" + t.getName() + "\">" + t.getName()) + "</a>");
    if (t.hasParams()) {
        write("(");
        boolean firstp = true;
        List<String> ap = new ArrayList<>();
        for (String p : t.getParams()) {
            if (definitions.hasLogicalModel(p))
                ap.addAll(definitions.getLogicalModel(p).getImplementations());
            else
                ap.add(p);
        }
        Collections.sort(ap);
        for (String p : ap) {
            if (!firstp) {
                write("|");
                w++;
            }
            // again, p.length() could be wrong if this is an extension, but then it won't wrap
            if (w + p.length() > 80) {
                write("\r\n  ");
                for (int j = 0; j < indent; j++) write(" ");
                w = indent + 2;
            }
            w = w + p.length();
            // TODO: Display action and/or profile information
            if (p.equals("Any")) {
                write("<a href=\"" + prefix + "resourcelist.html" + "\">" + p + "</a>");
            } else if (t.getName().equals("Reference") && t.getParams().size() == 1 && !Utilities.noString(t.getProfile()))
                write("<a href=\"" + prefix + t.getProfile() + "\"><span style=\"color: DarkViolet\">@" + t.getProfile().substring(1) + "</span></a>");
            else
                write("<a href=\"" + (dtRoot + definitions.getSrcFile(p) + ".html#" + p) + "\">" + p + "</a>");
            firstp = false;
        }
        write(")");
        w++;
    }
    return w;
}

Example 52 with Reference

use of org.hl7.fhir.r4b.model.Reference in project kindling by HL7.

the class XmlSpecGenerator method writeTypeLinks.

private int writeTypeLinks(ElementDefn elem, int indent) throws Exception {
    write(" <span style=\"color: darkgreen\">");
    int i = 0;
    // this is wrong if the type is an attribute, but the wrapping concern shouldn't apply in this case, so this is ok
    int w = indent + 12 + elem.getName().length();
    for (TypeRef t : elem.getTypes()) {
        if (i > 0) {
            write("|");
            w++;
        }
        if (w + t.getName().length() > 80) {
            write("\r\n  ");
            for (int j = 0; j < indent; j++) write(" ");
            w = indent + 2;
        }
        // again, could be wrong if this is an extension, but then it won't wrap
        w = w + t.getName().length();
        if (t.isXhtml() || t.getName().equals("list"))
            write(t.getName());
        else if (t.getName().equals("Extension") && t.getParams().size() == 0 && !Utilities.noString(t.getProfile()))
            write("<a href=\"" + prefix + t.getProfile() + "\"><span style=\"color: DarkViolet\">@" + t.getProfile().substring(1) + "</span></a>");
        else if (definitions.getConstraints().containsKey(t.getName())) {
            ProfiledType pt = definitions.getConstraints().get(t.getName());
            write("<a href=\"" + (dtRoot + definitions.getSrcFile(pt.getBaseType()) + ".html#" + pt.getBaseType() + "\">" + pt.getBaseType()) + "</a>");
            w = w + pt.getBaseType().length() + 2;
            write("(<a style=\"color:navy\" href=\"" + (dtRoot + definitions.getSrcFile(t.getName()) + ".html#" + t.getName() + "\">" + t.getName()) + "</a>)");
        } else
            write("<a href=\"" + (dtRoot + definitions.getSrcFile(t.getName()) + ".html#" + t.getName() + "\">" + t.getName()) + "</a>");
        if (t.hasParams()) {
            write("(");
            boolean firstp = true;
            List<String> ap = new ArrayList<>();
            for (String p : t.getParams()) {
                if (definitions.hasLogicalModel(p))
                    ap.addAll(definitions.getLogicalModel(p).getImplementations());
                else
                    ap.add(p);
            }
            Collections.sort(ap);
            for (String p : ap) {
                if (!firstp) {
                    write("|");
                    w++;
                }
                // again, p.length() could be wrong if this is an extension, but then it won't wrap
                if (w + p.length() > 80) {
                    write("\r\n  ");
                    for (int j = 0; j < indent; j++) write(" ");
                    w = indent + 2;
                }
                w = w + p.length();
                // TODO: Display action and/or profile information
                if (p.equals("Any")) {
                    write("<a href=\"" + prefix + "resourcelist.html" + "\">" + p + "</a>");
                } else if (t.getName().equals("Reference") && t.getParams().size() == 1 && !Utilities.noString(t.getProfile()))
                    write("<a href=\"" + prefix + t.getProfile() + "\"><span style=\"color: DarkViolet\">@" + t.getProfile().substring(1) + "</span></a>");
                else
                    write("<a href=\"" + (dtRoot + definitions.getSrcFile(p) + ".html#" + p) + "\">" + p + "</a>");
                firstp = false;
            }
            write(")");
            w++;
        }
        i++;
    }
    write("</span>");
    return w;
}

Example 53 with Reference

use of org.hl7.fhir.r4b.model.Reference in project kindling by HL7.

the class XSDBaseGenerator method generateElement.

private void generateElement(ElementDefn root, ElementDefn e, String paramType, Map<String, String> rules) throws Exception {
    List<TypeRef> types = e.getTypes();
    if (types.size() > 1 || (types.size() == 1 && types.get(0).isWildcardType())) {
        if (!e.getName().contains("[x]"))
            throw new Exception("Element has multiple types as a choice doesn't have a [x] in the element name '" + e.getName() + "' in resource " + root.getName());
        if ((types.size() == 1 && types.get(0).isWildcardType())) {
            generateAny(root, e, e.getName().replace("[x]", ""), null);
        } else {
            String close = " minOccurs=\"0\">";
            ;
            if (!forCodeGeneration) {
                write("          <xs:choice minOccurs=\"" + checkRule(e.getMinCardinality().toString(), e.getName() + ".min", rules) + "\" maxOccurs=\"1\">\r\n");
                if (e.hasDefinition()) {
                    write("            <xs:annotation>\r\n");
                    write("              <xs:documentation xml:lang=\"en\">" + Utilities.escapeXml(checkRule(e.getDefinition(), e.getName() + ".defn", rules)) + "</xs:documentation>\r\n");
                    write("            </xs:annotation>\r\n");
                }
                close = "/>";
            }
            for (TypeRef t : types) {
                String type = encodeType(e, t, true);
                String name = e.getName().substring(0, e.getName().length() - 3) + nameForType(type);
                write("           <xs:element name=\"" + name + "\" type=\"" + type + "\" ");
                if (e.unbounded())
                    write(" maxOccurs=\"" + checkRule("unbounded", e.getName() + ".max", rules) + "\"" + close + "\r\n");
                else
                    write(" maxOccurs=\"" + checkRule("1", e.getName() + ".max", rules) + "\"" + close + "\r\n");
                if (forCodeGeneration) {
                    write("              <xs:annotation>\r\n");
                    if (e.hasDefinition()) {
                        write("                <xs:documentation xml:lang=\"en\">" + Utilities.escapeXml(checkRule(e.getDefinition(), e.getName() + ".defn", rules)) + " (choose any one of " + e.getName().replace("[x]", "") + "*, but only one)</xs:documentation>\r\n");
                    } else {
                        write("                <xs:documentation xml:lang=\"en\">(choose any one of " + e.getName().replace("[x]", "") + "*, but only one)</xs:documentation>\r\n");
                    }
                    write("              </xs:annotation>\r\n");
                    write("             </xs:element>\r\n");
                }
            }
            if (!forCodeGeneration)
                write("          </xs:choice>\r\n");
        }
    } else {
        write("          ");
        if ("extension".equals(e.getName()))
            write("<xs:element name=\"" + e.getName() + "\" type=\"Extension\" ");
        else if ("div".equals(e.getName()) && e.typeCode().equals("xhtml"))
            write("<xs:element ref=\"xhtml:div\" ");
        else if (e.usesCompositeType()) {
            ElementDefn ref = root.getElementByName(definitions, e.typeCode().substring(1), true, false, null);
            String rtn = this.types.get(ref);
            if (rtn == null)
                throw new Exception("logic error in schema generator (null composite reference in " + types.toString() + ")");
            write("<xs:element name=\"" + e.getName() + "\" type=\"" + rtn + "\" ");
        } else if (types.size() == 0 && e.getElements().size() > 0) {
            String tn = root.getName() + "." + Utilities.capitalize(e.getName());
            int i = 0;
            while (typenames.contains(tn)) {
                i++;
                tn = root.getName() + "." + Utilities.capitalize(e.getName()) + Integer.toString(i);
            }
            write("<xs:element name=\"" + e.getName() + "\" type=\"" + tn + "\" ");
            structures.put(tn, e);
            this.types.put(e, tn);
            typenames.add(tn);
        } else if (types.size() == 1) {
            if (types.get(0).isUnboundGenericParam() && paramType != null)
                write("<xs:element name=\"" + e.getName() + "\" type=\"" + paramType + "\" ");
            else if (!Utilities.noString(e.getRegex())) {
                String tn = root.getName() + Utilities.capitalize(e.getName()) + "Type";
                regexQueue.put(tn, e.getRegex());
                write("<xs:element name=\"" + e.getName() + "\" type=\"" + tn + "\" ");
            } else
                write("<xs:element name=\"" + e.getName() + "\" type=\"" + encodeType(e, types.get(0), true) + "\" ");
        } else
            throw new Exception("how do we get here? " + e.getName() + " in " + root.getName() + " " + Integer.toString(types.size()));
        write("minOccurs=\"" + checkRule(e.getMinCardinality().toString(), e.getName() + ".min", rules) + "\"");
        if (e.unbounded())
            write(" maxOccurs=\"" + checkRule("unbounded", e.getName() + ".max", rules) + "\"");
        else
            write(" maxOccurs=\"" + checkRule("1", e.getName() + ".max", rules) + "\"");
        if (e.hasDefinition()) {
            write(">\r\n");
            write("            <xs:annotation>\r\n");
            write("              <xs:documentation xml:lang=\"en\">" + Utilities.escapeXml(checkRule(e.getDefinition(), e.getName() + ".defn", rules)) + "</xs:documentation>\r\n");
            write("            </xs:annotation>\r\n");
            write("          </xs:element>\r\n");
        } else {
            write("/>\r\n");
        }
    }
}

Example 54 with Reference

use of org.hl7.fhir.r4b.model.Reference in project kindling by HL7.

the class ProfileGenerator method convertElements.

public void convertElements(ElementDefn src, StructureDefinition ed, String path) throws Exception {
    ElementDefinition dst = new ElementDefinition();
    if (!ed.hasDifferential())
        ed.setDifferential(new StructureDefinitionDifferentialComponent());
    ed.getDifferential().getElement().add(dst);
    String thisPath = path == null ? "Extension" : path;
    dst.setId(thisPath);
    dst.setPath(thisPath);
    if (!Utilities.noString(src.getProfileName()))
        dst.setSliceName(src.getProfileName());
    dst.setShort(src.getShortDefn());
    dst.setDefinition(preProcessMarkdown(src.getDefinition(), "Element Definition"));
    dst.setComment(preProcessMarkdown(src.getComments(), "Element Comments"));
    if (src.getMaxCardinality() != null) {
        if (src.getMaxCardinality() == Integer.MAX_VALUE)
            dst.setMax("*");
        else
            dst.setMax(src.getMaxCardinality().toString());
    }
    if (src.getMinCardinality() != null)
        dst.setMin(src.getMinCardinality());
    if (src.getFixed() != null)
        dst.setFixed(src.getFixed());
    if (src.hasMustSupport())
        dst.setMustSupport(src.isMustSupport());
    if (src.hasModifier())
        dst.setIsModifier(src.isModifier());
    if (dst.getIsModifier())
        dst.setIsModifierReason(src.getModifierReason());
    if (src.hasSummaryItem() && dst.getPath().contains("."))
        dst.setIsSummaryElement(Factory.newBoolean(src.isSummary()));
    for (Invariant id : src.getStatedInvariants()) dst.addCondition(id.getId());
    // dDst.
    for (TypeRef t : src.getTypes()) {
        if (t.hasParams()) {
            for (String tp : t.getParams()) {
                if (definitions.hasLogicalModel(tp)) {
                    for (String tpn : definitions.getLogicalModel(tp).getImplementations()) {
                        ElementDefinition.TypeRefComponent type = dst.getType(t.getName());
                        String pr = "http://hl7.org/fhir/StructureDefinition/" + tpn;
                        type.addTargetProfile(pr);
                    }
                } else {
                    ElementDefinition.TypeRefComponent type = dst.getType(t.getName());
                    String pr = t.hasProfile() ? t.getProfile() : // this should only happen if t.getParams().size() == 1
                    "http://hl7.org/fhir/StructureDefinition/" + (tp.equals("Any") ? "Resource" : tp);
                    if (type.getWorkingCode().equals("Reference") || type.getWorkingCode().equals("canonical") || type.getWorkingCode().equals("CodeableReference"))
                        type.addTargetProfile(pr);
                    else
                        type.addProfile(pr);
                }
            }
        } else if (t.isWildcardType()) {
            for (String n : TypesUtilities.wildcardTypes(version.toString())) dst.getType(n);
        } else {
            if (definitions != null && definitions.getConstraints().containsKey(t.getName())) {
                ProfiledType ct = definitions.getConstraints().get(t.getName());
                ElementDefinition.TypeRefComponent type = dst.getType(ct.getBaseType());
                type.addProfile("http://hl7.org/fhir/StructureDefinition/" + ct.getName());
            } else if ("Extension.url".equals(path)) {
            // juat don't populate it
            // ElementDefinition.TypeRefComponent tt = dst.addType();
            // tt.setCodeElement(new UriType());
            // tt.getFormatCommentsPre().add("Note: special primitive values do not have an assigned type. e.g. this is compiler magic. XML, JSON and RDF types provided by extension");
            // ToolingExtensions.addStringExtension(tt.getCodeElement(), ToolingExtensions.EXT_JSON_TYPE, "string");
            // ToolingExtensions.addStringExtension(tt.getCodeElement(), ToolingExtensions.EXT_XML_TYPE, "xs:anyURI");
            // ToolingExtensions.addStringExtension(tt.getCodeElement(), ToolingExtensions.EXT_RDF_TYPE, "xs:anyURI");
            } else {
                ElementDefinition.TypeRefComponent type = dst.getType(t.getName());
                if (t.hasProfile())
                    if (type.getWorkingCode().equals("Reference") || type.getWorkingCode().equals("CodeableReference"))
                        type.addTargetProfile(t.getProfile());
                    else
                        type.addProfile(t.getProfile());
            }
        }
    }
    if (definitions != null) {
        // igtodo - catch this
        for (String mu : definitions.getMapTypes().keySet()) {
            if (src.hasMapping(mu)) {
                addMapping(ed, dst, mu, src.getMapping(mu), null);
            }
        }
    }
    for (String in : src.getInvariants().keySet()) {
        ElementDefinitionConstraintComponent con = new ElementDefinitionConstraintComponent();
        Invariant inv = src.getInvariants().get(in);
        con.setKey(inv.getId());
        if (!con.hasKey()) {
            extensionCounter++;
            con.setKey("exd-" + Integer.toString(extensionCounter));
        }
        con.setRequirements(inv.getRequirements());
        if (Utilities.noString(inv.getSeverity()))
            con.setSeverity(ConstraintSeverity.ERROR);
        else
            con.setSeverity(ConstraintSeverity.fromCode(inv.getSeverity()));
        con.setHuman(inv.getEnglish());
        con.setXpath(inv.getXpath());
        if (!"n/a".equals(inv.getExpression()))
            con.setExpression(inv.getExpression());
        dst.getConstraint().add(con);
    }
    if (src.hasBinding())
        dst.setBinding(generateBinding(src.getBinding()));
    if (src.getElements().isEmpty()) {
        if (path == null)
            throw new Exception("?error parsing extension");
    } else {
        ElementDefn url = src.getElements().get(0);
        if (!url.getName().equals("url"))
            throw new Exception("first child of extension should be 'url', not " + url.getName() + " for structure definition " + ed.getUrl());
        convertElements(url, ed, thisPath + ".url");
        // this pair might leave elements out of order, but we're going to sort them later
        if (!hasValue(src)) {
            ElementDefn value = new ElementDefn();
            value.setName("value[x]");
            value.setMinCardinality(0);
            value.setMaxCardinality(0);
            convertElements(value, ed, thisPath + ".value[x]");
        } else {
            ElementDefn ext = new ElementDefn();
            // can't have an extension if you have a value
            ext.setName("extension");
            ext.setMaxCardinality(0);
            convertElements(ext, ed, thisPath + ".extension");
        }
        if (src.getElements().size() == 2 && src.getElements().get(0).getName().equals("url") && src.getElements().get(1).getName().equals("value[x]")) {
            ElementDefn value = src.getElements().get(1);
            value.setMinCardinality(1);
            convertElements(value, ed, thisPath + ".value[x]");
        } else {
            for (ElementDefn child : src.getElements()) {
                if (child != url) {
                    if (child.getName().startsWith("value") && !child.getName().startsWith("valueSet"))
                        convertElements(child, ed, thisPath + "." + child.getName());
                    else {
                        if (child.getElements().size() == 0 || !child.getElements().get(0).getName().equals("url")) {
                            ElementDefn childUrl = new ElementDefn();
                            childUrl.setName("url");
                            childUrl.setXmlAttribute(true);
                            childUrl.getTypes().add(new TypeRef("uri"));
                            childUrl.setFixed(new UriType(child.getName()));
                            child.getElements().add(0, childUrl);
                        }
                        if (!hasValue(child)) {
                            ElementDefn value = new ElementDefn();
                            value.setName("value[x]");
                            value.setMinCardinality(0);
                            value.setMaxCardinality(0);
                            child.getElements().add(value);
                        }
                        convertElements(child, ed, thisPath + ".extension");
                    }
                }
            }
        }
    }
}

Example 55 with Reference

use of org.hl7.fhir.r4b.model.Reference in project kindling by HL7.

the class ProfileGenerator method produceOpParam.

private void produceOpParam(String path, List<OperationDefinitionParameterComponent> opd, OperationParameter p, OperationParameterUse defUse) throws Exception {
    OperationDefinitionParameterComponent pp = new OperationDefinitionParameterComponent();
    pp.setName(p.getName());
    if (path.contains("."))
        pp.setUse(defUse);
    else if (p.getUse().equals("in"))
        pp.setUse(OperationParameterUse.IN);
    else if (p.getUse().equals("out"))
        pp.setUse(OperationParameterUse.OUT);
    else
        // but this is validated elsewhere
        throw new Exception("Unable to determine parameter use: " + p.getUse() + " at " + path + "." + p.getName());
    pp.setDocumentation(preProcessMarkdown(p.getDoc(), "Operation Parameter Doco"));
    pp.setMin(p.getMin());
    pp.setMax(p.getMax());
    if (p.getBs() != null) {
        if (p.getBs().hasMax())
            throw new Error("Max binding not handled yet");
        pp.setBinding(new OperationDefinitionParameterBindingComponent().setStrength(p.getBs().getStrength()).setValueSet(buildValueSetReference(p.getBs())));
        if (!Utilities.noString(p.getBinding().getName())) {
            pp.getBinding().addExtension("http://hl7.org/fhir/StructureDefinition/elementdefinition-bindingName", new StringType(p.getBinding().getName()));
        }
    }
    if (!Utilities.noString(p.getProfile())) {
        pp.addTargetProfile(p.getProfile());
    }
    opd.add(pp);
    if (p.getFhirType().equals("Tuple")) {
        for (OperationParameter part : p.getParts()) {
            produceOpParam(path + "." + p.getName(), pp.getPart(), part, pp.getUse());
        }
    } else {
        List<TypeRef> trs = new TypeParser(version.toCode()).parse(p.getFhirType(), false, null, null, false);
        if (trs.size() > 1) {
            if (p.getSearchType() != null)
                pp.setSearchType(SearchParamType.fromCode(p.getSearchType()));
            pp.setType(Enumerations.FHIRAllTypes.fromCode("Element"));
            for (TypeRef tr : trs) {
                pp.addExtension(ToolingExtensions.EXT_ALLOWED_TYPE, new UriType(tr.getName()));
                if (tr.getParams().size() > 0)
                    throw new Error("Multiple types for an operation parameter, where one is a reference, is not supported by the build tools");
            }
        } else {
            TypeRef tr = trs.get(0);
            if (definitions.getConstraints().containsKey(tr.getName())) {
                ProfiledType pt = definitions.getConstraints().get(tr.getName());
                pp.setType(Enumerations.FHIRAllTypes.fromCode(pt.getBaseType().equals("*") ? "Type" : pt.getBaseType()));
                pp.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + pt.getName());
            } else {
                if (p.getSearchType() != null)
                    pp.setSearchType(SearchParamType.fromCode(p.getSearchType()));
                pp.setType(Enumerations.FHIRAllTypes.fromCode(tr.getName().equals("*") ? "Type" : tr.getName()));
                if (tr.getParams().size() == 1 && !tr.getParams().get(0).equals("Any"))
                    pp.addTargetProfile("http://hl7.org/fhir/StructureDefinition/" + tr.getParams().get(0));
            }
        }
    }
}